Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------DAG2         ------->TEIL                                               --------->ALFIN1             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <---------ANAC58         <----------DOF2      <xxxxxxxxx                                             <---------ANAC58        <---------ANAC58   <xxxxxxxxxxxx                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------YAB1 -------------AGL15              --------->GLK1(2)   <----------DOF2 <---------ANAC58xxxxxxxxxxxxxxxx   ctaatcgaagaaaaaccaaaattcttccacatgagaatcagagattgccttggggctttatggcagtgtttgcttttgaatctcttatcgttgtataaat  9233800                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                            <xxxxxxxx                                                    <------NtERF2                           <xxxxxxxx                                                   ----------->RAV1(1)                  <xxxxxxxxxxxx                                                  --------->ANAC46                      <xxxxxxxxxxxx                    ------>ZmHOX2a(2)            <---------LBD16                     <---------ARR14(2)                  --------->ARR11(3)          ---------->DOF2            --------->ARR14(2) <xxxxxxxx                  <---------ARR11(3)         <------NtERF2 <---------ARR14(2)        --------->ARR14(2)           <---------AtLEC2                 --------->LBD16<-----------ARR10   <---------HSFB2a(2)         xxxxxxxxxxxxxxxx>smallRNA(i)      --------->ANAC46--------->ARR14(2)  --------->HSFB2a(2)---         <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->RAP2.6(2)           <---------ARR14(2)--------->bZIP60(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------LBD16  <---------ARR11(3) <---------LBD16 <xxxxxx xxxxxxxxxxxsmallRNA(se3)            <---------REM1(1)     --------->ARR11(3)------>ZmHOX2a(1)------- xxxxxxxxxxxsmallRNA(si3)           --------->ARR11(3) <------NtERF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------MYB52(2) --------->ARR11(3)   ggttccatagtttgcaagtagatcgtaatcgtttcaaagatgtagccggaacgcggcagagtatctccactaacaaatcctctggaagttctggcatcat  9233900                                        <---------WOX13(1)                                       <------------CBF                                       >>>>>>>>>ARR2                                      --------->ATHB12                                     <---------YAB1                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   <----------DOF2                                  <---------ANAC46                                  <---------ANAC58                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                  <---------ANAC58                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <------NtERF2                             --------->MYB55(2)                             <---------MYB46(3)                             --------->ABI4(2)                            --------->ALFIN1                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          --------->LBD16                           ---------->ID1 ------ICU4          <------------AtMYB77                       <----------DOF2                   --- ----->ATHB12 <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->ICU4   <xxxxxxxxxxxxxxxxsmallRNA(fl3)                    <---------ANAC58           <---------AHL20(2) -----YAB1--------->LBD16<---------ATERF1(2)                   <---------ANAC58           --------->AHL20(2) xxxxxxxxxxxxxsmallRNA(si3)<---------MYB52(1)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(le3)<---------DEAR3(1)            <-----------RAV1(1)         <---------YAB1 xxxxxxxxxxxsmallRNA(fl3)<---------DEAR3(1)              <---------TOE2(3)    <xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(si3)--------->ATERF1(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------ xxxxxxxxxxxxxxsmallRNA(fl3)<---------AtMYB61         <----------DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------------------>WRI1 <---------DREB2C(2)      <---------TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(fl3) <---------RAP2.6(2)<---------TOE1(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -->YAB1<---------LBD16--------->MYB52(1)<---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <--   cattgttatctccggaggaagaaactgccggtggtggctttgattgttgtttagggttttatgttgctttgttgttttctagggtattatgtttaattta  9234000                                                                                                -----            --------->AHL20(1)                                                                  -----            <---------AHL20(1)                              ----------->GT1                     -----            <---------AHL20(2)                       --------------->AGL15                      <----           <-----------TBP                           <---------------AGL15            <---------WOX13(1)      <----------DOF2       ---------->DOF2  --------->ANAC58    ----------->GT1     <------------CBF ------>At4g35610      --------->AHL20(2)    --------->ANAC58   --------->DAG2      --------->ATHB12 xsmallRNA(si3)    <----------ID1            --------->ANAC46  ---------->DOF2     <---------YAB1 ---AHL20(2)--------->ARR11(3)         <---------GLK1(1)   --------->DAG2   <---------ZAT2<---------YAB1 -------At4g35610  --------->ANAC46    --------->GLK1(1) ---------->DOF2 ---------->DOF2--------->YAB1   tgctgactctttaatatatagacgaaaaaataaagtttttgatatccaagtaaaacaataaaaggtaaagtaaaacaaagctggtttgattgatgatcaa  9234100         ----------->GT1                                 ------->GAMYB       ---------->DOF2                                <---------ALFIN1  --------->AHL20(2)--------->GLK1(1)                <---------ALFIN1  <---------AHL20(2)<---------GLK1(1)                --------->MYB46(3) ------>GT1        --------->ARR14(2)              --------->HSFB2a(2)    --------->ARR14(2) ---->ANAC58    --------->ANAC58                   --------->ANAC46   --------->DAG2 ---->ANAC58  --------->MYB52(1)                --------->ARR14(2)   ---------->DOF2              <-- -----ANAC55(2) --------->ANAC58       <---------GLK1(2)*TSS  <<<<<<<ZML2 <---------ARR14(2)    -----   gtaaaaaaataaagaaaaacggaaaccctgtttctgagacagagtcttcgtttccacaaccctagaacaaaaaaagtatcccatttgtcatttgtcaatt  9234200                                                        --------->ANAC46                                                        --------->ANAC58                                                <-----------GT1                                            <----------DOF2                                           ================HOX2a_HOX2a                                         <---------ARR11(3)                                  <---------ARR11(3)    --------->ANAC58                            <---------ZAT14------>ZmHOX2a(2)                                        < --------->ICU4       --------->CCA1(2)  --------->ARR11(3)                                   ------- -------YAB1  ====================================HOX2a_HOX2a                 --------->GLK1(1) ----- ---->YAB1    <------ZmHOX2a(1)   --------->ARR11(3)------>ZmHOX2a(1)         <---------GLK1(1) -----   gtcattagcaagaacaggaagaagatagagaacagagctcttcgatcttttttcctccaaggaagaagtagaaagatgggatttcatgttcttagacctc  9234300            --------->At4g35610            <---------ZAT2                                             ------->GAMYB            <---------At4g35610                             --------->At5g28300        --------->ANAC58                                    <---------MYB52(1)        --------->ANAC58                                   --------->LBD16    <----------DOF2                                       --------->LBD16             <---------DAG2    <---------DAG2                               ------>ZmHOX2a(1)    --------->MYB46(3) ---------CCA1(2)    ------>ZmHOX2a(1)       --------->ARR14(2)       <---------MYB52(2)           <- -->AtMYB61 --------->ZAT2               --------->ANAC58 --------->ANAC46            <----------DOF2 ->MYB46(1)------->TEIL                  --------->ANAC58<---------LBD16          <---------ZAT18  -- ->MYB83--------->ANAC46                 --------->ANAC46--------->LBD16xxxxxxxxxxxxxxxx>smallRNA(s)<   ccatagctttacgcagctctctcctcggcttcttatccaaatcacacaatcctcttctccccggtaatttcaacaaacacttggtgggctttttcagttt  9234400             --------->LBD16                                   <----------TaMYB80            --------->ANAC46                                ----------->GT1           <---------LBD16                              <---------LBD16        <----------DOF2                                <---------ANAC46  <---------GLK1(2)                                    <---------ANAC58                   <---------- --------AHL20(2)                                      <---------ANAC58        <---------ANAC58 ------->AHL20(2)                                     <-------TEIL             <---------ANAC58 ---------AHL20(2)                   <--------P  <---------ATHB12    --------->ANAC46    ----------->GT1   tttaaattctctttccgcaaaattggattttggaaactggttagcgattcaatcgattcgtggggaaatacccacaaatttgtttgccaaattgtcaaat  9234500                                                                                -------->HAHB4                      --------->At4g35610                                       --------->YAB1                     <---------ARR14(2)                                        <---------YAB1                     --------->ARR14(2)                                       <---------TOE2(3)            <---------AHL20(1)                                               --------->YAB1            --------->AHL20(2)                                             <---------YAB1            --------->AHL20(1)                                          <-------TEIL             <---            <---------AHL20(2)                                      --------->MYB52(2)          -----           <---------AHL20(2)                                     <---------MYB52(1)           <-----    <------ZmHOX2a(1)<-----------ARR10          <---------ANAC58  ------>ZmHOX2a(1)           <------   --------->LBD16   --------->GLK1(2)          <---------ANAC58  =================================== <-----------RAV1(2)<---------GLK1(2)       ---------->DOF2      --------->TOE2(3)        <---------ANAC46 -HVH21    --------->AHL20(2)          --------->ICU4       ---------->ID1--------->TOE2(3)   -------   gcttcaggaaaaaataaattgagaatctgactcagtttgaaatgttgaaagcttgggtttttgtcttccttagtttcattaatgataatgtgttgtgatc  9234600    <---------ANAC46                                                    <---------------AGL15 -------DOF2                                                          <---------At4g35610 ->ZmHOX2a(2)                                                      <---------At4g35610 ----YAB1                                                        <---------ANAC58 ---ARR11(3)                      --------->ZAT2                 <---------ANAC58    --------->DAG2 ==HOX2a_HOX2a                <-------TEIL               <---------ARR11(3)         ---------->DOF2 < -->ARR11(3)     <---------LBD16  <---------ZAT2         --------->ARR11(3) <---------O2        <----   tttgttctgtgttatttgttcagggagatgggttcaagctggagaatgcagtaccatgagatgttttgcttctgctactcgtggcaaaaagttagggtct  9234700  Previous    Next  AGI:  At3g25460.1    Description:  F-box family protein. Identical to Putative F-box protein At3g25460 [Arabidopsis Thaliana] (GB:Q9LSV6); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G47300.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60955.1); similar to S3 self-incompatibility locus-linked putative F-box protein S3-A134 [Petunia integrifolia subsp. inflata] (GB:AAR15916.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 9232818    to: 9233903    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g25470.1    Description:  bacterial hemolysin-related. similar to unknown [Picea sitchensis] (GB:ABK25858.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Hemolysin A; (InterPro:IPR004538); contains InterPro domain Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877) Range:  from: 9234156    to: 9236450    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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