Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ATHB12                                               --------->ANAC55(2)  <---------WRKY38(1)                                                  <---------ANAC55(2)  <---------ETT(2)                                                  --------->ARR14(2)  <---------WRKY12                            <---------HSFB2a(2) <------MYB46(1) --------->WRKY18(1)                          --------->HSFB2a(2) <------MYB83 ------ZAT14                             <---------MYB46(3)       <---------At4g35610   <---------ANAC58 ----->ZAT14               <-------TEIL <---------AtMYB61         --------->At4g35610   <---------ANAC58 ------ZAT18            <---------MYB46(3)<-------GAMYB         <-----------RAV1(2)   --------->ARR11(3)   gcggtcaacaatgaagagcaacttgatggttcattaagagagatggttgcagaagggctaagaggggcaggttacgagacttacaagagagcttgtagat  9224800                         --------->GLK1(2)                       <------NtERF2                              <---------GLK1(2)                     <---------ANAC46                       ------>MYB46(1)                    <---------LBD16                         ------>MYB83                <---------TGA1a                           --------->DEAR3(1)                <---------ANAC58                          --------->MYB46(3)                      ---                <---------bZIP60(2)                       <---------MYB46(2)                     <---                <---------O2                             --------->DEAR3(2)                     <----                <---------ANAC58                        --------->MYB52(1)                      <----                ==============================bZIP_DOF--------->ARR14(2)                        -----           <---------At4g35610                        <---------ARR14(2)                      <------           --------->At4g35610     ---------->DOF2   <---------At4g35610          <-----------HVH21<-     --------->HSFB2a(2)<---------GLK1(2)            --------->At4g35610 --------->ZAT6     ---------     <---------HSFB2a(2)<---------ARR14(2)   <---------GLK1(2)----------------->AGL1      <---------WOX13(1)   taggcttctgggaggctgacttggcggaatctttagacaaagcattggaatcttcagataccgaccctgattcggacactaaaccatcagagattgattg  9224900 ------>WRKY18(1) --------HVH21 --MYB46(1) --MYB83                       <---------YAB1 ------>GT1     <---------AHL20(2)                       --------->MYB46(3) ---WOX13(1)   --------->AHL20(2)                   <---------HSFB2a(2) --------WRKY38(1)   <---------YAB1          <---------ZAT18  <<<<<<<<<EIN3 >ATHB12       <---------AHL20(2)     <---------AGP1--------->HSFB2a(2)                <-------TEIL   gtcaaacgaattagctattaattttgatgagctatgaatagttctggttcacttacagaaccaatgtataccgaaattgagaacgttgattcatttttgt  9225000                                                                          <---------ICU4                                                                         --------->ICU4                                                               ---------->DOF2                                       <----------DOF2    <----------ID1--------->ANAC58                       ----------->RAV1(2)         ------>ZmHOX2a(1)    --------->ANAC58                       --------->At4g35610     <---------ARR14(2)   --------->ANAC58          --------->ATHB12        ---------->DOF2  ----------->GT1  --------->ANAC58           ------   tcttccatgagttgatttggctaacatctgaagttacaaagcttttttgaatcctgtaaaaaaacaaaagaagcaaggattacagaaattgaaccaaaaa  9225100                         ------>MYB83                                            <---------ANAC58                         ------>MYB46(1)                                         <---------ANAC55(1)                         --------->MYB52(1)                                      <---------ANAC46                       --------->AtMYB61                                         <---------ANAC58                       <---------MYB59                                           --------->ANAC55(2)                    ------>MYB83                                            <---------ICU4                    ------>MYB46(1)                                ------->TEIL  <---------ANAC55(2)                  --------->AtMYB61                         <----------DOF2 <-----------RAV1(1)                  <---------MYB59                         --------->LBD16  --------->ICU4 --------->HSFB2a(2) --->DAG2  <------------CBF       <------------CBF      <---------LBD16   <------------CBF<---------HSFB2a(2)   ttgacccaaaaacaattgaaccaaaccaaaccgaaatattggtttggccttggctaaacccggtttatggacctgtaattgttgcgtctctacgagaaga  9225200                                                   <---------MYB46(3)                                                 --------->ATERF1(1)                                                 <------NtERF2                                                <---------ERF1                                                <---------ORA47(2)                                                ------>NtERF2                                                <---------ATERF1(1)                                                <---------DEAR4(2)                                                <---------RAP2.3(1)                                               <---------ANAC46                                               <---------RAP2.3(3)                                               <---------RAP2.3(2)                                               <---------DEAR3(1)                                               --------->DEAR3(1)                                              <------NtERF2                                              <---------ABI4(1)                                              --------->ATERF1(1)                                             <---------RRTF1(1)                                             <---------ATERF1(1)                                             <---------ERF1                                             ------>NtERF2                                             <---------RAP2.3(1)                                            <---------RAP2.3(2)                                            <---------DEAR3(1)                                            <---------ATERF1(2)                    ------>NtERF2           <---------TGA1a                                     -----                   <---------DEAR3(1)       <---------RAP2.3(3)                                <-----                   <---------At1g77200      --------->ATERF1(2)                               -------          *TSS   <-----------HVH21         --------->RAP2.6(3)        --------->ZAT2        ---------       ===============================================MYC_MYB         --------->At4g35610  ----------       <-------GAMYB<---------DEAR3(2)   ----------->HVH21            <---------At4g35610  <---------ANAC46       --------->At4g35610    --------->CCA1(2)<---------RRTF1(3)  --------->TGA2(2)     ------>NtERF2      ----------->GT1<------NtERF2   --------->GLK1(1)  <---------TOE2(3)               --------->ANAC46 <------NtERF2  --------->DEAR3(1)   <---------GLK1(1)  <---------TOE1(3)  --------->TOE2(3)---------   ggcagagtcagttaaacaccgtcggcgagaagaaatggggtttctgacggcggcgattagggtttcgacatcagcagcctcaatgcttctacgccgtaaa  9225300     <---------At4g35610     --------->At4g35610              <-----------GT1     <---------ZAT2               <----------DOF2     <------NtERF2              ------>NtERF2     --------->ZAT2            --------->DEAR3(1)  <------NtERF2             <---------DEAR3(1)  <---------At4g35610       --------->ANAC46 ---->ARR11(3)             ------>ZmHOX2a(1) ----CCA1(2)              <---------ALFIN1                           --------------->AtSPL8 --->DOF2               ------>ZmHOX2a(1)                            <---------------AtSPL8        -- >LBD16                <---------ALFIN1                           <-----------HVH21            ------ ->GT1               <---------ATERF1(1)     <----------DOF2 --------->ZAT18                 <------- >At5g28300     ------>ZmHOX2a(1) <---------DAG2          ------->TEIL                --------->WOX13(1)   tctcggcagctagggttcctagcctcctcctcgccgcttttttccagctttaattccatgaatcgcactatcaggtactactactcatccatcaaatcat  9225400                                                                                             <------- -------->DOF2         --------->ATHB12        <-------TEIL                              <---------ANAC46 --->WOX13(1)<---------YAB1           <---------TOE2(3)          --------->YAB1          <---------ANAC58 --ATHB12 <----------DOF2   --------->ATHB12--------->At4g35610 <---------YAB1           <---------ANAC58   tcaaagctcgagcttttgattttgttgatttgattagattgagattagatgcacagagattaacttataatgaagtagctcgtgtaatattgtgtgcaag  9225500                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                  <---------GLK1(2)                                                  <---------ARR14(3)                                                  --------->ARR11(3)                                                  <---------ARR14(2)                                                  --------->ARR14(3)                                                  <---------ARR11(3)                                                  --------->ARR14(2)                                        <---------At4g35610                                       --------->MYB52(2)                                     --------->DOF5.7(2)                                     <-------           --------->GLK1(2)         <---------MYB52(1)                                      --------          <---------GLK1(2)         --------->TOE2(3)                             ----------->HVH21       --------->ANAC58             --------->TOE1(3)                      --------->ZAT2   ---------       --------->ANAC58            <---------HSFB2a(1)------>ZmHOX2a(1)    <---------At4g35610 --AtLEC2<------ZmHOX2a(1)    --------->ALFIN1  ----------->ARR10          <---------ZAT2   <--------   gttttgcataaggaatctcttactagaccaatgtggaacgttagcttcttaagatcctcttcgtttcattcaactccagctcgtgagaccggtgatgatg  9225600                                                                                            <--------                                                                                            ---------                                                                                          <---------ANAC58                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                                                          <---------bZIP60(2)                                                                                         <---------DEAR3(1)                                                                                        --------->ZAT18                                                                                        --------->ZAT14                                                                                        <---------ZAT14                                                                                       <---------ANAC46                                                                                  <---------MYB46(3)                                                                --------->At4g35610  <---------MYB46(3)                                                                <---------At4g35610 --------->ALFIN1                                                               --------->GLK1(2)--------->SPL7<------NtERF2 --ICU4--------->ARR14(2)                                 <------ZmHOX2a(1)    --------->ALFIN1 ->YAB1<---------ARR14(2)                          --------->AHL20(2)        <---------ANAC58------>NtERF2 >ICU4 --------->GLK1(2)               <-------GAMYB---------->DOF2 ---------->DOF2<-------GAMYB ---- -YAB1<---------GLK1(1)     --------->ICU4         <---------AHL20(2)        <---------ANAC58<-------   acattagcaaatctgagaacagttcgagtcaagatggagacagttgtactaaattaaagaggaagaagctgaaaggtaagcgtgcggttgtgcggtggct  9225700  Previous    Next  AGI:  At3g25430.1    Description:  CAF1 family ribonuclease. similar to AHG2/ATPARN, ribonuclease [Arabidopsis thaliana] (TAIR:AT1G55870.1); similar to unknown [Populus trichocarpa] (GB:ABK95700.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 9222423    to: 9225007    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g25440.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G28480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46979.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 9225210    to: 9226947    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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