Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------AHL20(2)                                                                            --------->AHL20(1)                                                                         --------->AHL20(2)                              ----------->RAV1(1)                     --------->YAB1      <---------AHL20(2)                             <----------ID1              <------ZmHOX2a(2)  <---------ARR11(3)                           --------->ANAC46             <---------ARR11(3)  <---------AHL20(1)     --                           --------->ANAC58             --------->ARR11(3)  --------->AHL20(2)     <- --------->DOF2            --------->ANAC58    <---------ATHB12    --------->YAB1         --------->AHL20(2) -----AGL15               --------->DAG2    <---------AHL20(2)  --------->YAB1           --------->YAB1 ------AGL1              ---------->DOF2<---------YAB1 <---------At4g35610  --------->ARR11(3)    <--   ggaaaagaattgttgatgacaaaacaaaaaagcaacaaaaatatgtttaatcaattgagatcacaataatcttcataatatattaagcctattaaaattt  9204500               <---------ATHB12                               <---------TOE1(2)            <---------AHL20(2)                                <---------TOE2(2)            --------->AHL20(2)                     <------MYB46(1)        <------ZmHOX2a(1)                          <------MYB83                              <-------      <---------TOE2(3)                            ----------->GT1            --------->AHL20(1) ---->ZmHOX2a(1)--------->YAB1                   <---------MYB52(1)          --------->AHL20(2)     < --------------AGL15<---------ARR11(3)        <---------TOE2(3)   <-------TEIL<---------AHL20(2)    - -------MYB59--------->WOX13(1)              <-----------GT1 ------>ZmHOX2a(1)--------->AHL20(2) ----   cctaatctaaggaattaatcaagatgtgaagaaatttcaaagtatatttacgttggtaatttcctaggttcagtccaaaaaaaattgaactcatttttct  9204600                                    --------->At4g35610                                    <---------At4g35610      <------MYB46(1)               --------->ZAT2                      --------->AHL20(2)      <------MYB83           --------->AHL20(2)                         <---------AHL20(2)     --------->MYB59     <---------AHL20(2)                             --------->ATHB12 ----GT1  ----------->HVH21  <---------AHL20(2)                         --------->ATHB51 ---------AHL20(2)       --------->AHL20(2)                            --------->AHL20(2) -------->AHL20(2)      --------->AHL20(2)                             <---------AHL20(2)          -- ------->GT1 <---------WOX13(1)---------->DOF2   <---------YAB1        <---------AHL20(1)         <--   agttaattaggtctgactgatatggatttaattaaaagagctgagttcgatattatcgaattctaaacttcaaattatttgctacaagttatataacata  9204700                            <-----------GT1           --------->CCA1(2)                         <---------ZAT6              <---------ARR11(3)                   <---------TOE2(3)             ---------->DOF2                   ----------->GT1 ------->ATHB12  <---------AHL20(2)        <---------LBD16            <---------TOE2(3)             - -------YAB1    --------->AHL20(2)   <----------DOF2 --------->ARR11(3) --------->AHL20(2)      -----   gttattgatattttgaaaattaatgtagtattacaaactcttttcttcggaaaaagatatatgtaagaaattaagaaaatatgaaatgtcaatacaaacc  9204800                                                          --------->TOE2(3)                                                      --------->YAB1            --------->REM1(2)                        <---------YAB1                       ---------->DOF2   --------->YAB1                              <---------ARR14(2)                     <----------DOF2 -------->YAB1                                 --------->ARR14(2)          <------------CBF        -- ---->TOE1(2)        --------->YAB1           <------ZmHOX2a(1) --------->ATHB12<---------------AtSPL8   tagtataagaaccgtgaagacaataagaacagtaaacgagagttgaaaggatttgatcatcgtaaatgatagaaatgaattgatagtactttgaaagtta  9204900                         --------->YAB1                                  <---------RVE1(1)            --------->YAB1                                              <---------GLK1(2)          <------------CBF             ------->TEIL                     <---------ARR11(3)        <---------------AGL15         <---------CCA1(2)                 --------->ARR11(3)        --------------->AGL15       <---------ANAC55(2)               <---------TOE1(3)       ----------------->AGL2  <------ZmHOX2a(1)                      <---------TOE2(3)       ------------>CBF <---------AHL20(2)                         <---------AHL20(2)            ----       ----------------->AGL3<---------TOE2(3)              --------->ARR11(3)                   <---      >>>>>>>>>MYB2    --------->AHL20(2)                   <---------ARR11(3)     <----------DOF2 -- -------->DOF2      <-----------TBP --------->ANAC55(2)    <---------CCA1(2) <-----------GT1 --------   caaaagaaaaccaattgtagttatatataataaggaatatgtatctcacattcaaacacatatatctattttaagatttttactactttgtactccgaat  9205000            <---------WRKY18(1)       ------->TEIL       -------->P     ------>ZmHOX2a(2)    <------ZmHOX2a(2)    --------->CCA1(2)   <-----------ARR10   <---------ARR14(2)   <---------ARR11(3)   --------->LBD16   --------->ARR14(2)   <---------TOE1(2)                                          --------->DAG2   --------->AGP1   <---------ARR14(2)           ---------->DOF2                   <---------TOE2(3)   --------->ARR11(3)  <-----------RAV1(2)   <---------ANAC55(2)                 ---------->DOF2  --------->RVE1(1) --------->ARR14(2)   --------->YAB1                         <---------AHL20(2) ----->AHL20(2)  <---------TOE2(2)<---------ANAC58                            <---------YAB1      --- ------AHL20(2)  <---------TOE1(2)<---------ANAC46                         <---------AHL20(2)     --- -------->DOF2  <-----------RAV1(2)     <---------YAB1                     <---------YAB1   <-------- ->LBD16 --------->TOE2(3)        <---------ANAC58--------->DAG2    <---------AHL20(2) ----------->GT1   taaaagatctaccttgactcaggttccaggttttttgcttatatgataagtaaaagtgtcaaactcttatttcattttttattaaaaggttgtaacttgt  9205100                                     <---------YAB1                                    <---------AHL20(2)                                    <---------AHL20(1)                     --------->YAB1                                  <---------YAB1                          <---------YAB1                                --------->YAB1                         <---------ATHB12     --------->DAG2             <---------ICU4                         --------->ICU4    ---------->DOF2            --------->ICU4            <------------CBF--------->ARR11(3)   ---------->DOF2             <---------YAB1            --------------------->WRI1---------->DOF2 ------>ANAC58              <---------AHL20(2)          --------->ATHB12--------->YAB1    <---------TOE2(3) ------>ANAC58--------->YAB1--------->ICU4             <---------AHL20(2)<---------ARR11(3)       --- -ANAC46  ----------->GT1   <---------YAB1 <-----------GT1<---------WOX13(1) <---------YAB1     <----   aagccaaaaggctcgataataacatgtgatattattattattttttaacgacttcatttcattgatagaatcaatgatcataatacaaagttgatgttat  9205200                                                                           <---------ANAC58                                                                           <---------ANAC46                                                                           <-------GAMYB                                                                           <---------ANAC58                                                                          <------MYB46(1)                                                                          <------MYB83                                                                          --------->MYB55(2)                                                                          <---------MYB46(3)                                                                          --------->MYB52(2)                                                               <---------ARR11(3)                                                               <---------ARR14(2)                                                               --------->ARR14(2)                                                               --------->ARR11(3)                                                              --------->GLK1(1)                                                              <---------GLK1(1)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                             --------->ARR11(3)                                                             ----------->ARR10   <---------MYB46(3)       <-------TEIL                   <-------GAMYB          <---------ARR11(3)<---------ANAC46    ----------->GT1                  <------MYB83           <------ZmHOX2a(1)<---------MYB46(3)   <---------------AtSPL8            <------MYB46(1)    <---------ANAC58 --------->MYB111(1)  <---------ANAC46    --------->AHL20(2)                <---------ANAC58 <---------AtMYB61 ------->DOF2   <---------ZAT6      <---------AtMYB61   <---------ANAC46<--------P -----YAB1    ----------->GT1  <---------YAB1       <----------DOF2 <-----------RAV1(2)      --------   gaaagcgggtacatagtagtgaaatttaaaactctgatttggttgaagatgatgctttgcgaggatatctgcaggttggttgtttgttcttggaacccat  9205300                               --------->ARR14(2)                               <---------ARR14(2)                               --------->GLK1(2)                              <---------MYB52(1)                               <---------ARR11(3)                            <-------GAMYB     <-----            ------>ZmHOX2a(1)  <-----------ARR10                        <----------DOF2  <---------ARR11(3) --------->AGL3                --------->ARR11(3)      ------->TEIL     <---------DAG2   --------->ARR11(3)   ttgaagacagcctcctcaaatcgtttttgccaaaatctgccttctcttatccagttgaatcttccaaagtttagcttttcgttgttcataagctcttcca  9205400  Previous    Next  AGI:  At3g25265.1    Description:  LCR4 (Low-molecular-weight cysteine-rich 4). Identical to Putative low-molecular-weight cysteine-rich protein LCR4 precursor (LCR4) [Arabidopsis Thaliana] (GB:P82719); similar to LCR14 (Low-molecular-weight cysteine-rich 14) [Arabidopsis thaliana] (TAIR:AT2G25344.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851) Range:  from: 9204117    to: 9204860    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g25270.1    Description:  nucleic acid binding. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G04420.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 9205171    to: 9206202    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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