Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                        <------ZmHOX2a(2)                                                                                        <---------GLK1(1)                                                                                        --------->GLK1(1)           ----------->HVH21                                                           <---------ARR11(3) <---------ICU4                                                           ----------->GT1------>ZmHOX2a(2) --------->YAB1                                                     --------->ANAC46   --------->ARR14(2) ---------YAB1                                                      --------->ANAC58   <---------ARR14(2) -------ICU4                                                        --------->ANAC58   <---------AGP1 ------>YAB1          <---------ICU4                         --------->ANAC58          --------->ARR11(3) ------ATHB12    <---------ATHB12                            --------->ANAC46  --------->ZAT6 ------- --->WOX13(1)  --------->WOX13(1)                            --------->ANAC58--------->YAB1   -------   tcatcatcaccttgtgacaatcactaattccacttcaatctcatctattctagcaaattagaaacgcaaaacgaaacagtaatactacagatctctgatc  9159500                                                                                        <---------HSFB2a(2)                                                                                        --------->HSFB2a(2)                                                                                      <-------TEIL  -                                                                                     --------->CCA1(2)                                                                                     --------->ARR14(1)                                                                                    <---------ARR14(2)                   <------ZmHOX2a(2)                                                <---------GLK1(2)                   --------->CCA1(2)                                                --------->ARR11(1)                  <---------ARR14(2)                                                --------->ARR14(2)                  --------->ARR11(3)                               --------->ANAC46--------->HSFC1(2)  <-------TEIL    <---------ARR11(3)        <---------YAB1         --------->ANAC58<---------HSFB2a(1) --------->CCA1(2)--------->ARR14(2)   --------->ZAT6              --------->ANAC58--------->HSFB2a(1) ->ZmHOX2a(2) --------->YAB1         <-----------GT1               ------->GAMYB   <---------HSFC1(2) -->AGP1   --------->WOX13(1)       <---------YAB1     <---------ARR14(2)         ----------->ARR10 - -->ARR11(3) <---------ATHB12  ----------->GT1         --------->ARR14(2)   <----------ID1        ---   tagatacaaaaatcaatgaagatccaattcaacaagttataacagtatgagtatcagtatccaattcaaacgccaaatgcgacgaagattcgcgaagaag  9159600                                                                 --------->ANAC58      <---------ANAC46                                                                 --------->ANAC58    --------->ZAT14                            <------ZmHOX2a(2)                    <---------ANAC55(2) --------->ZAT18 -------->ANAC58      --------->ARR14(2)       <---------HSFB2a(2)            ---------->DOF2 -------->ANAC58      <---------ARR14(2)       --------->HSFB2a(2)   ---------->DOF2 <---------ZAT14 ------>CCA1(2)  <---------YAB1   --------->ARR11(3)          <------ZmHOX2a(2)     --------->ALFIN1   ataagcacaaatcgaagttatgaagaaccgatctaagaactggaacagtctagaattcaaatcgatcaagtaaaagaagaaaaagagtggagtaagtaag  9159700                <---------HSFB2a(1)                                          <---------LBD16                --------->HSFC1(2)                                         <-----------GT1          -                --------->HSFB2a(1)                                   <---------YAB1               <-        <---------LBD16                                             --------->MYB52(1)             ==       <---------ANAC58                                            ----------->HVH21              ---       <---------ANAC58                                            ----------->TGA1               <--       <---------ANAC46                                            ------->GAMYB                  ---    <---------MYB52(1)               ------->GAMYB              --------->MYB52(1)      <---------ANAC46   <-------GAMYB<---------HSFC1(2)--------->MYB52(1)         --------->TOE1(3) ----------->GT1    <--  <---------ANAC58    --------->At4g35610                    --------->TOE2(3) --------->LBD16 <-----  <---------ANAC58    <---------At4g35610          --------->YAB1 <---------MYB52(2)   <---------LBD16   tatgccgttgctcggagaagtttccgatgaagaaaacaacggtggaaatacaattagagtttaccttaactgacgattaaccggaaaatttcggagagac  9159800              <---------ANAC58              <---------ANAC58         --------->HSFC1(2)         <---------HSFB2a(1)         <---------HSFC1(2)         --------->HSFB2a(1)      ---------->DOF2                            ------->TEIL           <---------bZIP60(1)     <------ZmHOX2a(1)                      <---------At4g35610         <---------TGA1a   <---------TOE2(3)                        ----------->RAV1(2)         --------->bZIP60(2) ----->ZmHOX2a(2)                           --------->ZAT2              ============================= -----ZmHOX2a(2)                            --------->At4g35610         --------->bZIP60(1) ===========HOX2a_HOX2a                     <---------ZAT2 =======================bZIP_DOF ------>ARR11(3)                         <---------At5g28300            --------->O2              --- -------ARR11(3)                        <-----------GT1    ---------->DOF2                       >>>> ------>ARR14(2)                  <---------TOE2(3)  ----------->GT1    --------->TGA1a       >>>>>>> -------ARR14(2)                  <---------TOE1(3) <---------HSFB2a(2) <---------O2--------->AHL20(2) ------------------TaNAC69(2) <---------STY1(2) <---------GLK1(2)       <---------ANAC46-------------   gatctgaggaaagcttccttggctatggcgctagttagggttttacagctgaatctcgaaaaaaagagagagcgacgtgagaacaaaaaaatggaagaag  9159900                                              <---------ANAC46                                 ------                                              <---------ANAC58                                 <-----            <---------ANAC58                 ------->TEIL                                      <-----      --------->DAG2               --------------->AtSPL8                                 --------->At5g28300     ---------->DOF2              <------------CBF                                       ----------->GT1 ===============bZIP_DOF          >>>>>>>>>ARR2           --------->AHL20(2)         <---------YAB1 -------->GT1<----------DOF2      >>>>>>>>>ARR1        --------->At4g35610         <---------ICU4 >>>>>TBF1  <---------ANAC58     --------->ATHB12 <---------CCA1(2)                --------->ATHB12 >>TBF1   *TSS                  <---------YAB1<---------ANAC58                    <---------YAB1 ----------->ANAC81     <---------CCA1(2)<---------------AtSPL3  <<<<<<<<<TBF1    --------->ICU4<----   aagaaaaaaaagtggctttagagtttatatctgtatgattgtacttgtacgtgtatcagataaattcttcttctaatcttccacatgattactgtaatta  9160000                                                                                          <-------GAMYB           ----------->GT1                                                               --------->MYB55(2)   --------->TOE2(3)                                                                     <---------MYB46(3)   --------->TOE1(3)                                                                   <---------MYB52(1)  ----------->GT1                                                                --------->WOX13(1) --->AHL20(2)                                                                  <---------ATHB12 ----AHL20(2)                     ---------->DOF2                        ----------->GT1 ----------->GT1 ----AHL20(1)     <---------AHL20(2)                       <----------DOF2   --------->WOX13(1) -----AHL20(2)   --------->AHL20(2) ----------->GT1 <-------TEIL    <-----------GT1  <-----------RAV1(1)   attttcgttaaatctgttataaaattttgacatttacaaagtaatacagagaaattcatttctttagttttaacgaggttaatcaatctggtggttaaaa  9160100                                                                                     <----------DOF2                                                                              --------->ATHB12                                                                             <---------YAB1                                                                           ----------->GT1      <----                                                                         <---------ZAT14        -----                                                                --------->ANAC58  <-----------GT1----                           <---------AHL20(2)                   --------->ANAC58<---------WOX13(1) --           --------->TOE2(3)      <---------------AGL15       ---------->DOF2--------->ICU4     <---- <-------GAMYB            --------->AHL20(2)        ----------->GT1      --------->ZAT14    ---------   cgtcgttgtataatctcaacaatgtgtattatatagctcaaaatagttgaaaatgggtaagaacaaaagcaattgtatagtgattaactttctctaaaga  9160200         --------->DAG2 -----ARR11(3) ---->ARR11(3) <------ZmHOX2a(1)                                         ---------->DOF2 ----->GLK1(2)--------->ANAC58                                      <---------MYB46(3) ------->TOE2(3)                   <-----------GT1                  ----------->GT1 -----GLK1(2) --------->ANAC58---------->DOF2             --------->WOX13(1)  <---------REM1(1) ->DOF2 ---------->DOF2    >>>>>>>>>TBF1      <---------GLK1(2)  <----------DOF2               ------   ttcttaaacaaaaagcaggaaatagagaagaagaaagaaaccattctagattattttgagcaatctactttggttaaaagttgtagtttaagttgaaaga  9160300                 <---------MYB46(3)             <---------AHL20(2)             --------->ATHB12            <---------AHL20(2)            --------->AHL20(2)                                   --------->WRKY12            --------->AHL20(1)                                   ----------->HVH21         ----------      --------->YAB1                   ------>ZmHOX2a(2)       ----------->RAV1(2)        -----------    --------->ANAC46        <-----------GT1                    --------->At4g35610        <---------ZAT6    --------->ANAC58    --------->AHL20(2)         --------->At4g35610                  ----------->GT1    --------->ANAC58<-------TEIL     --------->ARR11(3)        --------->ZAT2 --------->ZAT6 ----->GT1  <---------AHL20(1)       <---------ARR11(3)        <---------At4g35610 ---------->DOF2   taaaacaagcaaaatttattggttcattttatactagatgatcttaaaccggcatcttcagtacaagctgaccctccataacactgaaagaagtgataaa  9160400  Previous    Next  AGI:  At3g25150.1    Description:  nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein. similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G60980.1); similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G60980.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO17019.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPr Range:  from: 9156964    to: 9159910    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g25160.1    Description:  ER lumen protein retaining receptor family protein. similar to ER lumen protein retaining receptor family protein [Arabidopsis thaliana] (TAIR:AT4G38790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70657.1); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) Range:  from: 9160175    to: 9162074    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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