Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                                <----                                                                       ------>MYB46(1)         ------                                                                       ------>MYB83           <------                                                               --------->YAB1                ------>MYB46(1)                <---------YAB1                                 ----------->GT1               ------>MYB83     ----------->GT1  <-----------GT1   <---------ICU4  <---------------AGL15        <---------------AtSPL8   gcgatatttgtaaaaatagttattgtactatttgtatcacaaaaattgcaagtagttgattcaaatggtaacctatctatagacgaattggtaccaatcg  9131900                                                           <-----------GT1                                                       <--------ATHB1                                                       <---------ICU4                                                      <---------ATHB51   ---------->DOF2         <---------ICU4         <------ZmHOX2a(2) -------HVH21       <-----------GT1              --------->ARR11(3) -------TGA1       <---------YAB1                <---------ARR11(3)                     <-----------RAV1(1) --->YAB1        <---------ICU4     --------->At4g35610--------->ATHB51            <-----------GT1 ---ATHB12      <---------MYB52(1)  --------->LBD16   <---------ATHB12          ----------->GT1     <   tcaccaaaagaaatttcagttattactactcattaatccgctaaaatccaagatcaataattcactaaattctgctataacattgtaacattgttgctat  9132000                                   --------->CCA1(2)                                   <------ZmHOX2a(2)                                  --------->ARR11(3)                                  <---------ARR14(2)                                  --------->AGP1                                  <---------ARR11(3)                                  --------->ARR14(2)                            --------->YAB1                            <---------AHL20(2)                            --------->ATHB51                            -------->HAHB4                            -------->ATHB1                            <--------HAHB4                            <---------ICU4                                      <---------ANAC58                            --------->ATHB12                                    <---------ANAC58                           <---------YAB1                                 --------->DAG2      -------        --------->AHL20(2) <---------ATHB51                              ---------->DOF2      <------        <---------ATHB51   --------->ICU4                              --------->AtMYB61     <-------    --------->YAB1       --------->YAB1                        --------->HSFC1(2)            -------- <---------ICU4         --------->AHL20(2)                     <---------HSFB2a(1)       ----------->RAV1(1) --------->YAB1         <---------YAB1 --------->ANAC46        <---------HSFC1(2)        <---------ALFIN1 ---------ATHB12        <---------AHL20(2)                     --------->HSFB2a(1)  <---------ETT(1)   caataatcaaattattctattagcatataattattagatccacaaaacttatctactagagcagaagattccaccaaaagttgcttccgacccacatatc  9132100                                                                                         --------->DOF5.7(2)                                                                                    ----------->TGA1                                                                                <---------At5g28300                                                                                XXXXXXXXXXXXXXXXXXXXX                       <-----------GT1                                         --------->MYB52(1)                    <---------AHL20(2)                                         <---------DOF5.7(2)                    <---------ICU4                                           --------->DOF5.7(2)    -                   --------->ICU4                                           <----------DOF2      <---                --------->AHL20(2)                                        <------NtERF2  --------->At5g28300               --------->ARR11(3)                                        ------>NtERF2 <---------ANAC46        <------ZmHOX2a(1)     --------------->AGL15                      <---------RAP2.6(3)     ----       <----------ID1  --------->YAB1                                   --------->RAP2.3(2)    ------   <----------DOF2 --------->AHL20(2)                                   --------->RAP2.3(3)    ------ -->ARR14(2)   <---------ARR11(3)                                       --------->RAP2.6(2)   ------- ---ARR14(2)   <---------AHL20(1)                                       --------->DEAR3(1) --------->MYB52(1) --CCA1(2)     --------->AHL20(1)      <------ZmHOX2a(1)               --------->RAP2.3(1) <---------DOF5.7(2) ->GLK1(1)    --------->YAB1  <----------DOF2  ----------->GT1     ---------->DOF2  ----------->HVH21   caattctttaggacaaaaatatttattacaatcttttaagaggaaaacaatgtaacatggacaccaaaataaagccgcctttaacggtgacggtaacggt  9132200           --------->ZAT14           <---------ZAT14           --------->ZAT18        <---------ANAC58    <-------GAMYB  <---------ANAC46  <---------ANAC58  <---------ANAC58 XX>MIR404 <---------ZAT18 ------>GAMYB ------DOF5.7(2)                                                        <---------ANAC58 ----->MYB52(1)                                            <---------AHL20(2) --->DOF5.7(2)                                  <---------TOE2(3)       <---------ANAC58 --->At5g28300    ------------>CBF         ----------->GT1 --------->AHL20(2)   ---------->DOF2 >GAMYB <---------ANAC58                   <---------ZAT6 --------->AHL20(2)<----------ID1   aacggcgtttgagtgctcttgacaatacatgaaaatttagtaatagagttaagaaatgaaattaatagagtttggagtgagacaaagagagaagagaaga  9132300                   <---------WRKY45                 <----------DOF2                   <---------WRKY38(1)         <---------DOF5.7(2)                   <---------WRKY12           <---------WRKY38(1)                 <-----------HVH21            <---------WRKY12                 *TSS                         <---------WRKY45            <------ZmHOX2a(1)                --------->WRKY18(1)   <<<<<<<<<TBF1   ------>ZmHOX2a(1)       <------ZmHOX2a(1)               --------->ZAT6  --------->YAB1         ------>ZmHOX2a(1)   ttagagagaggagaggaagggtcaaagaatacatagcatcaccactagtcaacgcttttataaaacttcttcttcgtctcctctccttctcacatctctc  9132400                       ---------->DOF2                    >>>>>>>>>MYB98                   ------>MYB83                   -------->P                   ------>MYB46(1)             <---------At4g35610                <------------------                 <---------MYB59               --------->At4g35610             <----------DOF2    ---   <----------DOF2 --------->MYB52(1)      <----------DOF2         --------->At5g28300 <----------DOF2   tctgtctttctctctcaaacctaacaaaagcttcagacttcaattctttagctacctctctcccatggcagtaagtgttttctttccttctttccttctc  9132500                                                           --------->WOX13(1)                       <----------DOF2                   <---------MYB52(1)        <---------ARR14(2)                    <---------ARR11(3)                  --------->LBD16<---------DAG2   <---------HSFB2a(2)            --------->MYB59      <---------GLK1(2)     <---------ANAC46<----------DOF2  --------->HSFB2a(2) ------ANAC81    <---------HSFB2a(2)                   <---------ANAC55(2)         --------->ARR14(2) --->ZmHOX2a(1)  --------->HSFB2a(2)           <-----------GT1   ----------->HVH21<------ZmHOX2a(1)   ctcttcttcttatttaggtctagagctttctctcagattatagtttttgtttcgattccgtcaatctctgaccctttttttggaggatttgtagaaagtt  9132600                              ------>ZmHOX2a(1)                            ----------------->AGL1                                     <---------YAB1                    <---------TOE1(3)                                            <---------YAB1<-----                    <---------YAB1 <---------TOE2(3)<---------ANAC58         <---------DAG2   <------                    <---------TOE2(3)               <---------ANAC58         <----------DOF2  <------   gagtcttaatctatttgcatttatggttcttcctattgagataacatttctatggattgcgatgtctattagtattcaactttatgattctgatttgctt  9132700                                                                              --------->ATHB12                                   <---------TOE1(3)                          <---------ICU4                                   <---------TOE2(3)                          --------->YAB1                                <---------YAB1                   --------->ARR11(3)      ---------->DOF2   <-----------GT1---------->DOF2           <---------ARR11(3) -----DOF2         ---------->DOF2 <---------YAB1              --------->ICU4<---------YAB1 ---ANAC58       <---------YAB1<---------AHL20(2)      <---------ANAC58  <---------DAG2 ---ANAC58----------->GT1 <---------YAB1--------->DAG2 <---------ANAC58  <----------DOF2         ----   tagataagaaaagggttttatgaaagttactatttttatggtaaagtttctatttttgcttagcaaagatttcaactttatcattgtacttggtcgaaat  9132800  Previous    Next  AGI:  At3g25070.1    Description:  RIN4 (RPM1 INTERACTING PROTEIN 4); protein binding. Identical to RPM1-interacting protein 4 (RIN4) [Arabidopsis Thaliana] (GB:Q8GYN5;GB:Q9LSG9); similar to nitrate-responsive NOI protein, putative [Arabidopsis thaliana] (TAIR:AT5G40645.1); similar to resistance-gene-interacting protein [Brassica juncea] (GB:ABM30198.2); contains InterPro domain Nitrate-induced NOI (InterPro:IPR008700) Range:  from: 9132317    to: 9134037    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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