Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ------>ZmHOX2a(2)                     <---------ARR11(3)                     --------->ARR11(3)               <---------HSFC1(1) --->LBD16     --------->HSFB2a(2)                        --------->ATHB12         <---------ARR14(2) ---LBD16      <---------HSFB2a(2)                       --------->ICU4        --------->ZAT6 ---ANAC46 <----------DOF2                             ----------->GT1    --------->At4g35610 --LBD16   ------>ZmHOX2a(1)                         <---------ZAT14      <---------At4g35610 -HVH21    ===================HOX2a_HOX2a         ----------->GT1     <----------DOF2   gaagaacacaatcctttctagatgatctgatacagaataacaaaaaaacatatggtgaagtgattagatcgactttagctaagactatctgaatataaac  9073200                                                             --------->ATHB12                         ----------->GT1         --------->At4g35610                      --------->TOE2(3)                       <---------ANAC46      <---------ARR14(2)                          --------->At4g35610                <----------DOF2              --------->ARR14(2)<---------WOX13(1)      <---------ALFIN1        <---------ARR14(2)                  ------>MYB83 --------->ATHB12            <-----------HVH21     --------->YAB1   <---------LBD16       ------>MYB46(1)<---------WOX13(1)    <---------TOE2(3)   ccagtaaacatatttgggctttctctcgggtataaacttgctcaccaaatatgctgaagtgattgattgtttcgaagaatgctaaggcatcacctcaaac  9073300                                                       <------ZmHOX2a(1)                         <---------ANAC58            --------->MYB59                   --------->DAG2                <---------MYB46(3)                  ---------->DOF2              <---------At4g35610          <---------AtLEC2                     <-------GAMYB          <---------ANAC46                    --------->MYB52(2)                   ------->TEIL     --------->MYB52(2)  <---------ANAC58  <-----------HVH21                    <---------ATHB12   tcttggtttgtttcatggagaaaagttgcttctccttgttctacttgtcagttgttaggaagaattagtcaatttctcttcaatgaatccctacaagtta  9073400                             <---------AtLEC2                        <---------ARR14(2)                        --------->ARR14(2)                      <-----------GT1                       <---------GLK1(1)                    <----------DOF2                       --------->GLK1(1)            ------>ZmHOX2a(1)  ------>ZmHOX2a(1)                 ---------->DOF2                   --------->TOE1(2)   <---------At4g35610      <----                 --------->MYB52(1)        <----------DOF2  <---------DAG2               ----------->GT1              <---------ANAC55(2)     <-----------GT1   <---------MYB52(1)        ---------->DOF2  <-   gactattgtgttgaataagtaaaggagttctgcatgagtttatctcttttgttcctccgatactttttacttcctctgagtaaaaaaagagaagtaaatt  9073500                  <------MYB46(1)                  <------MYB83                 <---------MYB46(3)                                                   ------>ZmHOX2a(2)                 <---------AtMYB61                                                   --------->CCA1(2)                <--------P                                                           --------->ARR14(1)               <---------ANAC58                                                      <------ZmHOX2a(2)               <---------ANAC46                                                     --------->ARR14(2)               <-------GAMYB                                                        <---------ARR11(3)               <---------ANAC58                                                     --------->ARR11(1)      <---------------AGL15                                                         <---------ARR14(2)      ------>ZmHOX2a(1)----------->GT1           --------->AHL20(2)                 --------->ARR11(3)     <-----------------AGL3                      <---------AHL20(2)               ----------->ARR10 -----ICU4    <------MYB46(1)    <-----------RAV1(1)             <----------ID1 ---------->DOF2 ----------GT1<------MYB83<---------AHL20(2)    --------->AHL20(2)       ---------->DOF2       ------   tttacttcctctaagtgggttggtctagtaaatttttgttgggcccaaaatttaaaaaatcaacaagaagacaaaaaaagcccaaagatccgagttggag  9073600                                                              <---------ALFIN1                                                              --------->ORA47(1)                                                              ------>NtERF2                                                             --------->DEAR4(1)                                                             --------->DEAR3(1)                                                             ----------->HVH21                                                            --------->ORA47(2)                                                     ------>NtERF2                                                    --------->DEAR3(1)                                                    --------->ANAC58                                                    --------->ANAC58                                                   --------->RAP2.3(1)                                                   --------->ATERF1(1)                           <---------YAB1          <------NtERF2                          <-----------GT1          --------->DEAR4(2)                         --------->YAB1           <---------ERF1                        <---------ATHB12          ------>NtERF2  --------->AtMYB61                      --------->WOX13(1)          <---------ATERF1(1)                    ------------>CBF  --------->ANAC46  <---------ATERF1(1)              --------->LBD16       --------->ZAT6<---------RAP2.3(1)          --------->ARR14(2)  *TSS<-----------GT1<---------RAP2.3(3)      ------>ZmHOX2a(1)        <-          --------->GLK1(2)<---------TOE2(3)     <---------DEAR3(1)  ------>ZmHOX2a(1)    --------->TOE2(3) ----->GT1<---------ARR14(2) <------------CBF    <---------RAP2.3(2)<---------ALFIN1      --------->TOE1(3)   ttaaactgacaaaatccgaagcaccaattaacattgttacactaaaccatggcgacgccttcgccgacctcctctcctccctctgattcaaaccctaatt  9073700                --------->At4g35610                                         --------->AtMYB61             <------NtERF2                                                 --------->MYB46(3)             ------>NtERF2                                               --------->ANAC58             --------->LBD16                                             --------->ANAC46            --------->RAP2.6(2)                                          <---------ALFIN1            --------->RAP2.3(2)                    ------->TEIL          --------->ANAC58            --------->RRTF1(2)                     --------->ARR14(2)  <---------ALFIN1            --------->DEAR3(1)                     --------->GLK1(2)  <---------ZAT14           --------->RAP2.3(1)                     <---------ARR14(2) --------->ZAT14          ------>NtERF2                         --------->ANAC58      <---------ZAT18          <---------ATERF1(1)                   --------->ANAC46     --------->DEAR3(1)          --------->At4g35610------>MYB46(1)    --------->ANAC58    --------->ANAC46          --------->LBD16    ------>MYB83      --------->LBD16    --------->DEAR3(1)         --------->DEAR3(1)------->GAMYB     --------->TOE2(2)    --------->AtMYB61         --------->ANAC46  --------->AtMYB61 --------->TOE1(2)    <---------ALFIN1             ------        <---------LBD16    <---------ALFIN1--------->ANAC58      --------->MYB46(3)     <----------DOF2   <---------MYB52(1)     --------->MYB46(3) ------->GAMYB       <---------MYB55(2)  <---------TOE1(2)  ------>NtERF2----------->RAV1(1)      ------>ZmHOX2a(1)      --------->ANAC46 <-----------HVH21  <---------At4g35610     <---------MYB55(2)--------->MYB46(3) <---------ALFIN1--------->DEAR3(1) --------->RAP2.6(2)     -------->P  ------>ZmHOX2a(1)      --------->ANAC46--------->DEAR3(1)------- --------At4g35610     --------->MYB46(3)  --------->ANAC58------>ZmHOX2a(1)<---------ALFIN1  -------   ctgccgctactccgccgcatcagaaacaaccaccctctcctcctcaacccacgaatccatcctctccaccaccgcacaccaccgtcgtagctttagccgc  9073800            <---------ETT(2)            --------->ETT(2)            --------->DEAR3(1)           <------NtERF2          ------>NtERF2         --------->O2         <---------O2         --------->RAP2.3(2)         --------->DEAR3(1)        --------->ATERF1(1)        --------->RAP2.3(1)       --------->LBD16       ------>NtERF2       <---------ATERF1(1)      --------->DEAR3(1)      --------->ANAC46   ------->GAMYB           ------>MYB46(1)   --------->AtMYB61      ------>MYB46(1)  --------->MYB46(3)   --------->ANAC46 -------->P--------->ATERF1(1) ------->TEIL <------NtERF2------>MYB83                               <---------ATHB12    --------->ANAC58 --->LBD16<---------ATERF1(1)       <---------LBD16              <---------------------WRI1         < -->RAP2.6(2)------>NtERF2------>MYB83                     ------>ZmHOX2a(1)---------->DOF2         < -->ANAC46<-----------HVH21-------->P --------->ZAT14  <---------ALFIN1--------->YAB1     --------->ANAC58   atcaacctccgccgtcgccagaaaaacccaacctgttctctggactcaagacgagaccctcctcttaatcgaatcatacaaagagaaatggttcgcaatt  9073900                                             ------>NtERF2                                          --------->At4g35610    --------->WRKY12                                          --------->ZAT2         --------->WRKY38(1)                                          <---------At4g35610  <-------GAMYB                       --                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <-        =================================HOX2a_HOX2a          <---------DEAR3(1)     --------->REM1(2)        ------>ZmHOX2a(1)               <---------MYB52(1)    <---------ANAC46       <---------ZAT14        ==================================HOX2a_HOX2a       --------->LBD16          --------->ZAT14     --------->PCF5                ------>ZmHOX2a(2)        ------>NtERF2           --------->ALFIN1 ---------ANAC58    ------->GAMYB <------ZmHOX2a(2)        <---------RAP2.6(2)<---------REM1(2)  <--- ---------ANAC58  --------->At4g35610  <-------GAMYB      <---------LBD16--------->GLK1(1)      -----   ggtcgtggtcctctaaaatcaactcactgggaagagatcgccgttgctgcctcatctcgttccggcgttgaacggacatctacacagtgtaggcataaga  9074000            ---------->DOF2        <---------ANAC58        <---------ANAC55(2)        <---------ANAC58        --------->ANAC55(2)                                                                         =        <---------ANAC46                         <-----------------AGL2                         -----       <-------TEIL     ------>ZmHOX2a(2)        <-----------------AGL1                         <----   ----------->ARR10   <------ZmHOX2a(2)         --------->TOE2(3)               <---------ARR14(2) = ------->HSFB2a(2)    --------->ARR14(2)       ------>MYB46(1)                  ===================== --------HSFB2a(2)    <---------ARR14(2)       ------>MYB83         --------->YAB1     <---------GLK1(2) ---ZmHOX2a(2)   --------->GLK1(2)           <---------MYB59 <----------DOF2    ===================== ---->ARR11(3)  <---------GLK1(2)         <---------PCF2  ---------->ID1        <------ZmHOX2a(1)   -   tcgagaagatgcgtaaaagattccgatctgagagacagagtatgggacctatctcaatttggcctttctataatcaaatggaggaattggattcttcaaa  9074100  Previous    Next  AGI:  At3g24860.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to transcription factor [Arabidopsis thaliana] (TAIR:AT2G44730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46127.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005) Range:  from: 9073630    to: 9074689    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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