Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ---------->DOF2          ------->GAMYB          --------->AtMYB61                                     ----------->GT1         --------->MYB46(3)                      --------->ARR14(2)        -------->P --------->TOE1(3)      ----------->HVH21   ---------->DOF2       --------->WOX13(1)            --------->ARR11(3)  <---------At4g35610                       --    --------->TOE2(3)              --------->HSFC1(2)    --------->At4g35610                  <------ -------->YAB1     --------->TOE2(3) <---------ARR11(3)  <---------ZAT2                    <---------YAB1 ->At4g35610     -------->P        <---------HSFC1(2)    --------->ZAT2         <----------DOF2<-----   aatcaacatcaaccaaagctaccttagcaaatttcgaaacatctctcaccgatttcgcaagctgaaaagaaaaattcgaaaactttaggggttttgatta  9030700                                                                               --------->MYB46(3)                                                                            <------ZmHOX2a(1)                                                                          <---------TOE1(2)                                                                         <------NtERF2                                                                       <---------DEAR3(1)                                                                      <------NtERF2  ------>MYB83                                                                      --------->ATERF1(1)                                                                     ------>NtERF2 --------->AtMYB61                                                                     <-----------HVH21             --           --------->GLK1(1)                                        <---------DEAR3(1)  --------->YAB1 ------->YAB1               --------->CCA1(2)                       <---------ANAC46 ------>MYB46(1) ---WOX13(1)               <----------ID1                      --------->MYB52(1)  <---------MYB59 <- ----AHL20(2)        ---------->DOF2              <---------ICU4    --------->DEAR3(1)  ----------->GT1   atcgaaattagagaaatcgaattcaaagagagacgaattgaatacgatttcatcatgctgaagacaaacggcgtcggaggaacgaccaaatcgtaaaaca  9030800                                                                                            ---------                                                                                            ---------                                                                                          <----------                                                                                        --------->YAB1                                                                                     <---------ICU4                                --------->WOX13(1)               <---------ARR11(3) --------->ICU4      <---------YAB1          <------ZmHOX2a(2)    <---------DOF5.7(2)         <---------ANAC46 ------->ARR11(3)             <---------ATHB12   --------->DOF5.7(2)          <------NtERF2 --------- --------ARR11(3)   --------->YAB1            ---------->ID1 <---------At4g35610<---------SPL7   agaacttcatcaatggtgtctctgataacccgatcaatctcttccttcgtcgttaacgtcttcagaagataactcatctcggcgtaagaattatacgaca  9030900                                                            <---------YAB1                                                           --------->AHL20(1)                                                           <---------AHL20(1)                                                           <---------AHL20(2)                                          --------->bZIP60(1)                                  ------                                          <---------O2     --------->AHL20(2)                  <-----                                          --------->O2  --------->AHL20(2)                     <-----                                          <---------bZIP60(1)                                  ------                                       --------->ANAC46 --------->YAB1            ----------->GT1 >ANAC58                       --------->AHL20(1)       <---------AHL20(2)       --------->ANAC58 >ANAC46                       <---------AHL20(2)    --------->YAB1            --------->MYB52(1) -GT1  --------->AHL20(2) --------->AHL20(2)        <---------YAB1 --------->At5g28300      --------- >ANAC58        ---------->DOF2--------->AHL20(2) --------->YAB1  ----------->GT1--------->ANAC58   <   tcgtttagataatataactaaagagacataaaataaaatatacgacgtcgtttgataataatataatacagtaactaaaacagacggaaaatatacgacg  9031000                                                     --------->MYB52(2)                                                   <---------MYB52(1)                                              <---------bZIP60(2)                                              --------->bZIP60(1)                 --------->YAB1               --------->O2         --------->YAB1                <---------YAB1                <---------O2        <---------AHL20(2)               --------->AHL20(2)             <---------bZIP60(1) <---------YAB1 --------->ANAC58               <---------AHL20(1)             --------->bZIP60(2)--------->AHL20(1)      ----------->GT1    ===============================bZIP_DOF <---------AHL20(1) <----------DOF2<---------AHL20(2)            --------->DEAR3(1) --------->AHL20(2)   ------->PIF5 --->O2     --------->AHL20(2)                --------->TGA1a --------->YAB1   --------->CCA1(2) ----bZIP60(1) <---------AHL20(2)             <---------TGA1a --------->AHL20(2) --------->ANAC46 ----O2     <---------AHL20(2)                =======================================bZIP_DOF --->bZIP60(1) --------->AHL20(1)      =================bZIP_DOF <---------AHL20(2)   <-------PIF5 >ANAC46    --------->YAB1             ---------->DOF2  ----------->GT1   ---------->DOF2 ---------MYB52(1)       ---------->DOF2   ----------->HVH21  <---------AHL20(2) --------->ANAC58   tcgttttttggtaataatataataactaaaagagacacagattaagcgacgtcgtttgtggtaataatataataactaaagagacgcaagtgcaaatgtt  9031100                       --------->YAB1                     --------->AHL20(2)                    --------->YAB1                   --------->AHL20(2)                                                        <-------                 --------->YAB1           <---------ARR11(3)                     <---------CCA1(2)              --------->YAB1          --------->YAB1                           ------>ZmHOX2a(1)    -           --------->TOE1(3)  ----------->GT1                        >>>>>>>>>MYB98       <---------ARR11(3)    *TSS   --------->TOE2(3) --------->ALFIN1    <---------GLK1(2)<---------MYB46(2)    <---------At4g35610 <---------YAB1--------->AHL20(2)  --------->GLK1(1)    <----------DOF2       --------->TOE2(3) -----   tttgtgataaaaaccataaaaataaaaataagtggagaaatcaaaatcatcgattctcctttgtttcgcctaacccaattcctaaatctcagcatctttc  9031200                                                                                                   <-                                               --------->TOE1(2)                                   --                                              --------->ATHB12                        ---------->ID1                                            --------->ARR14(2)    <---------------AGL15           --- ---DOF2                                    <---------ARR14(2)    =================================== -------->WOX13(1)                  <---------GLK1(2)  --------->ANAC58         <-----------GT1 <---- ---->YAB1      ---------->DOF2   --------->ICU4       --------->ANAC58  ----------->GT1<----------DOF2   atcaatccaatctctcaaataagcgagagagaaacaaagattatcgaatccttggagacgaaaacatactccaatttgtaattttctcgtcttttttttt  9031300                                                                              --------->CCA1(2)                                                                             <---------ARR14(2)                                                                             --------->ARR14(2)                                                 <---------MYB52(1)          --------->ARR11(3)                                            ------>ZmHOX2a(2)              ----------->ARR10                                           --------->GLK1(1)              <--------P              <--                                          ------->TEIL                  <------MYB83             ----                                          --------->ARR11(3)            <------MYB46(1)          ---- --------MYB59                      ----------->HVH21                  --------->MYB59           <--- ------------->AGL15       --------->ATHB12<---------GLK1(1)         --------->CCA1(2)      <-------- ------>ANAC55(2)         --------->ICU4  <---------AGP1<-----------GT1--------->MYB111(1)<------ZmHOX2a(1) ==============MADS_MADS  <---------ATHB12<---------ARR11(3)      <---------TOE2(3)     <---------TOE2(3) -------GT1          ------>ZmHOX2a(2) <---------WOX13(1)    <----------DOF2 --------->ARR11(1)  <---   acctgattttgttatacgtttgatcgaaatcatttgctctgatggatctctgttttgttaacccttttgagatttggtagatatggttttgaggattgat  9031400      ------>NtERF2      --------->At4g35610                          <---------ZAT6      <---------At4g35610                          ----------->GT1    <---------RAP2.6(2)                           <---------TOE1(3)   <---------At5g28300                            <---------TOE2(3)                                <- -------AHL20(2)                              <----------DOF2                                      <- ----->ARR11(3)           ----------->GT1   <---------MYB46(3)                        --------->GLK1(2) ----->AHL20(1) <-------GAMYB            <------MYB83                                 <---------ARR14(2) ------AHL20(1)<---------ANAC46          <------MYB46(1)                    <------ZmHOX2a(1) <------ -WOX13(1) <---------WOX13(1)           <---------AtMYB61        <---------AHL20(2)   --------->ARR14(2) ------ARR11(3)<---------MYB46(3)       --------->MYB111(1)      --------->AHL20(2)  <---------GLK1(2)   atatttgccgctgattgtcgttgaaaaattgtgaaatttgatttggtggtttagggttaaaatgaaattatatgatgaggaatataagaatctgattttt  9031500                                         <----------DOF2                                --------->ATHB12                           <---------ANAC58                           <---------ANAC46            <-------GAMYB                           <---------ANAC58           --------->MYB111(2)                        <---      <---------GLK1(2)    <---------ANAC55(1)        <---------MYB46(3)            <---------TOE1(3) --------AHL20(2)         --------->MYB52(2)          --------->MYB55(2)            <---------TOE2(3) --------YAB1  <---------ARR11(3) <---------WOX13(1) <--------P                    ---------->DOF2 ---AHL20(2)<-----------RAV1(2)<---------YAB1       <-------GAMYB      <----------DOF2        <------   ttttattagattctccagatgttcttgttacttgtgattgaaactttgattttgggttgttgttgtttttgaactttggggattttaaagttgaattttt  9031600  Previous    Next  AGI:  At3g24730.1    Description:  catalytic. similar to YLS8 (yellow-leaf-specific gene 8), catalytic [Arabidopsis thaliana] (TAIR:AT5G08290.1); similar to unknown [Picea sitchensis] (GB:ABK21102.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain mRNA splicing factor, thioredoxin-like U5 snRNP; (InterPro:IPR004123) Range:  from: 9030013    to: 9030901    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g24740.1    Description:  similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G25910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63812.1); contains InterPro domain Protein of unknown function DUF1644 (InterPro:IPR012866) Range:  from: 9031104    to: 9033847    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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