Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->ANAC46                                                          <---------ALFIN1                                                          --------->ANAC58                                                          --------->ANAC58                                                         ------>NtERF2                                                        --------->DEAR3(1)                                                        <---------ALFIN1                                                     --------->ANAC58                                                     --------->ANAC58                                                     --------->DREB2C(2)                 ----------->HVH21                   --------->RAP2.6(2)                --------->LBD16                     --------->MYB46(3)               <---------ANAC58                     --------->DEAR3(2)     --------->MYB46(3)    ---------->DOF2        <---------PCF5  --------->GLK1(1)   ----------->GT1            --------->WRKY38(1) ---------At4g35610  --------->DAG2              --------->WRKY12                           --------- -------->At4g35610---------->DOF2            <---------ANAC46                         ---------->DOF2 -----HVH21    <---------ANAC58       <-----------GT1--------->DEAR3(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   acagctatccaacatgtccgtgaaaggtagaaaggaagaatcaccccttcgtggaccgccacgcttctcaccattatgcagaatggcattaaagtcccct  9015100                                                                                             <------ZmHOX2a(1)                                                                                            ---------                                                                                            ---------                                                                                         --------->TOE1(2)                                         ------>ZmHOX2a(2)                            ---------->DOF2                   =============================HOX2a_HOX2a     --------->ZAT6    --------->TOE2(3)              <----------DOF2          <---------ARR11(3)      <---------YAB1 --------->GLK1(1)     -            <-------TEIL          --------->LBD16          <---------ANAC58   <---------GLK1(1)  ----         --------->HSFB2a(1)  --------->ARR14(2)       ------>MYB83  ---------->DOF2 --------->ARR14(2)   --------->ANAC46------>ZmHOX2a(1)   --------->ARR11(3)  <---------ANAC58--------->LBD16 <---------TOE2(2) >ZAT18 <---------TOE2(3)     <---------ARR14(2)       ------>MYB46(1)   <---------LBD16--------->ANAC46   agcatacaccaaggttctttcctattaatcccaatccgagtgatcttctcccaaaccaaatgcttatcactaaaagccgggtttccataaacgcaggaaa  9015200                                                  --------->At4g35610                                                  <---------At4g35610                                           <---------ANAC58                                         -     <-------TEIL                          <---------ANAC58                                      <--- <---------AHL20(2)                      --------->GLK1(2)                         <---------HSFB2a(2) >ANAC58         ------>MYB83           <---------GLK1(2)    --------->YAB1        --------->HSFB2a(2) >ANAC58         ------>MYB46(1)      ----------->ARR10 <---------DAG2      <----------DOF2     <---- -------->AHL20(2)                   --------->YAB1     <----------DOF2<---------At4g35610      ----- ----->YAB1    <---------MYB59xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----------HVH21     ---------->DOF2   cataaaattcatgagaaccaaattggatttgaaaatcaataagattcttgtctgcatactttatcacaatgtcaactcctttcttccaaaacaaagccaa  9015300                         --------->At5g28300             --------->ARR14(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      ---------->DOF2   ----------->GT1 ----->ZmHOX2a(1)      --------->ZAT6           --------->MYB46(3) ------ATHB12<---------ARR14(2)            --------->TOE1(3) -----ARR14(2)      <-------TEIL      --------->YAB1 ---->ARR14(2)      <---------ZAT14<----------DOF2                                               ----   tcctccactaaggccaatcgggttcacagtaaaaactctttcataccctaaccattcttgcaggtctactactacattactacaattcttggtttccatt  9015400                                                                                          <---------MYB52(2)                                                                                         <---------At4g35610                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                            <---------ANAC58                                                                            <---------ANAC58                      ---------->DOF2                                  ------>ZmHOX2a(1) --------->At4g35610          <---------LBD16                                           ------>MYB83         --------->ZAT2          <-----------RAV1(2)                  <---------GLK1(2)  --------->AtMYB61      <---------ZAT2        --------->TOE2(3)                  <---------LBD16  ------>ZmHOX2a(1)------>ZmHOX2a(1) ----->YAB1  <------ZmHOX2a(1) --------->At4g35610 <-----------HVH21------>MYB46(1)--------->GLK1(1)   aagaacaaaacctcaggaaaatgagaaagtctcatctccatgagtctcggaatcgtcaagtcctgagaccatcctagtccttggcaattccagctaacaa  9015500                               --------->TCP16(2)                              --------->PCF2                              <---------TCP16(1)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------------AGL15                               ----------->HVH21                     --------------->AGL15                <---------ARR14(2)                    <-----------------AG                  --------->ARR14(2)                    ----------------->AGL1                <-----------ARR10                    <-----------------AGL1                --------->ARR14(3)                    ----------------->AGL3     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <-----------------AGL3    --------->ALFIN1     <------NtERF2                  --------->PCF5           <---------TOE2(3)       <---------At4g35610 ------->GAMYB                <---------DEAR3(2) ------------>CBF       <---------ARR14(3)         --------->At4g35610         <----------DOF2      <---------PCF5 <-------GAMYB<---------ARR11(3)         <---------At4g35610       *TSS   <---------ORA47(1) --------->AtMYB61        --------->ARR11(3)     <-----------HVH21  ----------------------->TaNAC69(2)       <---------TOE1(3)       --------->At4g35610--------->MYB46(3) --------->ATHB12 --------->PCF2--------->MYB46(3)        <---------GLK1(2)--------->PCF2  <---------   gactcattaggctttggacggtccctcatttgggaccaccaatttagggttgagcttgaagattttcgcagcgctcggacccatgtcaactgcctttctc  9015600                                                                   <---------At4g35610                            <---------MYB52(1)                     --------->At4g35610                        ------>MYB46(1)                       <----------DOF2                        ------>MYB83                         ------>ZmHOX2a(2)                     --------->HSFC1(2)                      =========================HOX2a_HOX2a                     --------->HSFB2a(1)                   <---------AGP1                     <---------HSFC1(2)                    <---------ARR11(3)           --------->LBD16 <----------DOF2                 ------->TEIL          <---------HSFB2a(2)               ---------->DOF2<---------ARR14(2)  <----------DOF2    <---------HSFB2a(1)------>ZmHOX2a(2)  --------->ARR14(2) -DOF2    --------->HSFB2a(2)       <---------YAB1         --------->ARR11(3)  ------>ZmHOX2a(1)   ttgtcttttgttccagaggtagaaccttcctttaggctatgatccacaaagatggaagatggatctttcagcttgagtttcctagcatgcttagggggtc  9015700                     --------->LBD16                    <---------ANAC46                    --------->HSFB2a(2)                    <---------HSFB2a(2)                                           ---------->DOF2              <---------DAG2                                                    --------->LBD16              <----------DOF2                                                  --------->HSFB2a(2)             <---------DAG2                                                   <-----------------AGL1          <-----------GT1                                                     <---------LBD16        <----------DOF2                                                      --------->MYB52(1)        <---------DAG2  <----------TaMYB80                                   -------->P       <---------ANAC58--------->ARR14(2)                             --------->WRKY12       <---------ANAC58<---------ARR14(2)     ---------->DOF2   <-----------GT1<---------HSFB2a(2)   <----------DOF2 <---------LBD16--------->ZAT14         xxxxxxxxxxxxxxxx>smallRNA(i)   tgtttctttgctttacctttttccggatagtcccagtagagtctgactcaaagagaccagggctataaaccgttgaacttaccggaaagggctgagagag  9015800                                                                                                 <---               <---------ARR11(3)                                                          --------->ANAC58              <---------CCA1(2)                                                            --------->ANAC46              <---------ALFIN1                                                             --------->ANAC58            <---------ALFIN1                                                               --------->ANAC55(1)         --------->ANAC46                                                                  --------->TGA1a         --------->ANAC58          --------->ZAT14                                         <---------TGA1a         --------->ANAC58     <---------ZAT2                                           --------->HSFB2a(2)       <---------ALFIN1 --------->ANAC58         --------->ANAC58                      <---------HSFB2a(2) --------->ANAC58       --------->ANAC58         --------->ANAC58                    ------>ZmHOX2a(1) --------->ANAC58 <----------DOF2  <---------ZAT14             ------->TEIL --------->REM1(2)   <----   agcaaggaaacaccccacatctttagaagccaagctgttcactggttcagtaagccaatctcttgcatctttcgactgggtagactcctccagacgtaag  9015900                                                 <---------ICU4                                                <---------YAB1                                        <---------ALFIN1                                   --------->GLK1(2)                                   --------->ARR14(2)                                   <---------ARR14(2)                                 --------->HSFB2a(1)                                 <---------HSFB2a(1)                                 --------->HSFC1(2)                                    <---------YAB1                           <---------ANAC46     --------->ICU4                       <---------ICU4                           <---------ANAC58   --------->YAB1            --------->TOE1(3)                           <---------ANAC58  <---------YAB1  <---------ALFIN1       --------->ICU4                        <---------RAP2.6(2)  <------ZmHOX2a(2)   <----------DOF2    <---------YAB1 ---ZmHOX2a(1)        <-----------RAV1(1)   <---------ARR11(3)  <---------DAG2    --------->YAB1 ------ID1      --------->AtMYB61<---------HSFC1(2) --------->YAB1      --------->TOE2(3)   ---------   gacgaattcaaattgagaccaccattgtggctggaagaatccccacgatcataatcaaaaacaacacctttctcccttaacatatcatgatgaacgattg  9016000  Previous    Next  AGI:  At3g24675.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.4e-31 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus) Range:  from: 9011356    to: 9015507    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g24680.1    Description:  transposable element gene. similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G15520.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) Range:  from: 9015507    to: 9016970    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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