Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------WOX13(1)         --------->ATHB12         <---------ICU4        <---------AHL20(2)    ------->TEIL <---------ANAC46   --------->AHL20(2) <---------ANAC55(2)<---------AHL20(2) ----------->GT1   --------->AHL20(2)                                                --------->ARR11(3) ------->MYB52(1)  <---------AHL20(2)              --------->ARR14(2)     <------ZmHOX2a(1)         - --TEIL --------->AHL20(2)   <-----------GT1       <---------ARR14(2)   <---------TOE2(3)  --------->ANAC55(2) ->TEIL<---------AHL20(2)--------->AHL20(1)  <-----------GT1    --------->YAB1       <---------ARR11(3) ------AtSPL8      --------->YAB1      <---------AtLEC2      --------->YAB1<---------ARR14(2)   <----   ataacgtatattaattgctaattaaaatatgttacatttttgcataaaaaccatatacttgtataataacaaatgaggatagagagaggtcttacatatc  9008400                                                                   --------->TOE2(2)                                                                   --------->TOE1(2)                                                             --------->ANAC55(2)                                                             <---------ANAC55(2)                                                             <------MYB46(1)                                                            --------->MYB52(2)                                                            --------->MYB59                                                            --------->MYB46(2)                                                           <---------MYB55(1)                                                          <---------MYB52(1)                                                       <------NtERF2                                       --------------------->WRI1 ----------->RAV1(2)       --------->At4g35610      <---------ANAC58     <---------DEAR3(1)                           ---       <---------At4g35610      <---------ANAC46  --------->DEAR3(1)                              <--       <---------ZAT2           <---------ANAC58 --------->DEAR3(2)--------->TOE1(3)       <---------AHL20(2) -------->AtMYB61           <---------At5g28300 ------->TEIL--------->MYB111(1)    ----------->GT1--- -----ETT(2)               <-----------GT1   --------->AtLEC2<------MYB83       --------->STY1(2) <--   gaccattgcagctacttcttctgggtttttaactgcgtgttcattccatgcaccgtcgtcgttaggtaacctgagaaaacatagctagtatattaaaacg  9008500                --------->ANAC58                    <---------WOX13(1)  <---------DEAR3(2)                       ----------->HVH21    --------->TOE1(3) ------>bZIP60(1)                   <---------ARR14(2)         <---------At4g35610 -------bZIP60(1)          <----------DOF2--------->SPL7       --------->At4g35610 ------>O2      --------->ANAC46    --------->GLK1(2)          ----------->GT1        <---------MYB52(1) -------O2      --------->ANAC58    --------->ARR14(2)      <------ZmHOX2a(1)       <---------MYB46(3)   acgtcgtttcgaccgtataagcatcgtttcttttatcaaatctggacgacggagattgactaggaagcttaaaactcacttattagccgttgatgaatta  9008600                                                                                              -------                            <---------ANAC58                                                 --------               --------->MYB59                                                               <-------       --------->YAB1       <---------ANAC46                            <-----------GT1  ---------->DOF2      <---------YAB1        <---------ANAC58                   <-----------HVH21       <---------HSFB2a(2)    --------->CCA1(2)------>ZmHOX2a(1)    --------->ZAT6     ------->TEIL              --------->HSFB2a(2)   ctcgagctatgagagtttaggtcctctgtttcttgagccctataacacaaaaatgtagagacgaatgtcaaatgttacttctcttgtttctaaaagattt  9008700                                                                                                  <--          <---------GLK1(2)                              <---------ICU4                      --------       <---------HSFB2a(2)                               --------->ATHB12                 --------->At4g35610       --------->HSFB2a(2)                              <---------YAB1                    <---------At4g35610       --------->HSFC1(1)                               --------->ICU4              <---------HSFC1(2)  --------->ARR11(3)                                  --------->YAB1                --------->HSFC1(2)  <---------ARR11(3)                       --------->YAB1--------->YAB1             --------->HSFB2a(1) -->CCA1(2)                                --------->ANAC55(2)              --------->At4g35610  ---- ->ARR11(1)        ------->TEIL            --------->ANAC46<---------YAB1   <---------At4g35610  <--- --ARR11(3)--------->GLK1(2)        ------->TEIL<---------YAB1    <---------MYB46(3)<---------HSFB2a(1)   gaaagatttcgagaatctatgaacttacattgttgatgaatttatacataatgctagaatgattagagtcgttgagagagctaagaagcttctgctaaag  9008800     <-----------RAV1(1)                                                                          <-- <---------YAB1                                ----------->GT1                                    --- ----ZmHOX2a(2)                           --------->YAB1                                     -------- -->DOF2                             <---------ANAC46                                 --------->AHL20(2) ----->ARR11(3)                 ------>ZmHOX2a(1)                        ---------->DOF2     <------- ------ARR11(3)   ---------->DOF2<------------CBF             <------ZmHOX2a(1) ----------->GT1  ----   atcaccattgttggatatatcaaagctctctctcctattgtgtataatgaagaaaaatgtaagaggagagagagagaaagagatgtaattaacttggaga  9008900                       --------->AHL20(2)                       <---------AHL20(2)                       <-----------TBP                     <-----------TBP                     --------->AHL20(2)                                                <---------YAB1         --------->CCA1(2)                                                            <---------AHL20(1)        <-----------ARR10                                                             --------->AHL20(1)        --------->ARR11(3)                       --------->MYB52(1)                  --------->AHL20(2)        <---------ARR11(3)                     <---------MYB52(2)                    --------->YAB1 -------At4g35610    <---------AHL20(2)       --------->ANAC58                  <---------MYB52(1) ------>At4g35610  <-----------TBP            --------->ANAC58                 <-------GAMYB ->HSFB2a(2) <---------TOE2(3)            --------->ANAC46             <---------MYB59<---------AHL20(2) --HSFB2a(2) <---------TOE1(3)         <---------ARR14(2)         --------->At4g35610<---------AHL20(2) ----->GLK1(2)<---------At4g35610      --------->ARR14(2)--------->ALFIN1     ----------->GT1   agctgaagaagatttaagcttatatatatatagagagagagtataggcaagtaacgaaggtgtgaagaagcagcctaactccgttaattatatttggctc  9009000                                                       <---------WOX13(1)                                                  <---------ANAC46                                                  <---------ANAC55(1)                            <---                                       --------->MYB46(3)                                       -----                                      --------->At4g35610                                       <----                                 --------->MYB52(2)   <------------CBF                          -----                                 <---------MYB46(3)--------->LBD16                    --------->LBD16                               <-------GAMYB------>NtERF2                            <---------ANAC58                               <---------MYB52(1) <---------ANAC58                   --------->ANAC55(2)                             <---------ANAC58     <---------ANAC58                   <---------ANAC58                             <---------ANAC58     --------->ANAC55(2)          <------MYB46(1)  -----                             <---------ANAC46     <---------ANAC55(2)          <------MYB83    <-----                           ------->GAMYB------->GAMYB--------->ATHB12 <---------AHL20(2)  <---------WOX13(1)                         <---------At5g28300<---------RAP2.6(3)     <---------------AGL15<-----------                        --------->MYB52(1) <---------ANAC58      --------->AHL20(2)  <---------ANAC55(1)                      --------->DOF5.7(2)  <---------ANAC58      <---------AHL20(1)  <---------ANAC55(2)    <---------At5g28300 <---------DOF5.7(2)<---------ANAC46      <---------AHL20(2)  <---------ANAC46  <---------SPL7     <----------DOF2  <---------At4g35610   <------ZmHOX2a(2)<--------P --------->ATHB12   gagtcttacggtgtgatcagtttctttaacggcgtttgttaactgccgtcttccgtgattggatcattttatttttttggtaggcttccgtgattgaatc  9009100                                        <---------AHL20(2)                                       <---------AHL20(1)                                       <---------AHL20(2) ---------CBF                          --------->AHL20(2) --->ATHB1                             --------->AHL20(1)                     <---------ICU4 -----ICU4                            --------->AHL20(2)                 --------->At5g28300 ---->YAB1                 <----------DOF2                  <-----------GT1  --------->ICU4 ---->ATHB12        <-----------GT1 ------>MYB46(1)  <------MYB46(1)    ----------->GT1 ----ATHB12      <---------ICU4<-----------GT1       ----------->GT1  <---------ANAC46 -CBF          --------->TOE2(3)    ------>MYB83     <------MYB83 <----------DOF2   <----------DOF2 <   attgtttgacttcaaaacattatttccagctttaaaccaaattaatttgtttgggaggtatttagccactttgagggtaattagttctttcttatcaaat  9009200                             --------->AHL20(2)                          --------->YAB1                         <-------TEIL              --------->GLK1(2)             --------->ZAT6<---------AHL20(2)                       <-              --------->ARR11(3)     --------->AHL20(2)   --------->AHL20(2)         <---------WOX13(1)              <---------ARR11(3)<---------ARR11(3)      <----------DOF2     --------->MYB52(2) <----- ----------DOF2  <---------YAB1 --------->ARR11(3)---------->DOF2       ----------->GT1        ------   tcctttacatttcaaaaatcttatagattcataaaatctataaataccactaaaaagtctttaattgtagtaaatggttatttgttaattgaaggtgtat  9009300  Previous    Next  AGI:  At3g24670.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 10 precursor [Arabidopsis Thaliana] (GB:Q9LJ42;GB:Q8GXJ2); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to ripening-related pectate lyase [Mangifera indica] (GB:AAX88800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63802.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75298.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334 Range:  from: 9005946    to: 9008808    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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