Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->YAB1                                       --------->ANAC58                     --        <---------ATHB12                     --------->ARR11(3)       --------------->AGL15        <-      ------>ZmHOX2a(1)                      <---------ARR11(3)       <---------------AGL15      ---- --------->bZIP60(2)                       --------->ANAC58   --------->ANAC58                  <---- ----->NtERF2                              --------->ANAC58<------NtERF2                        <---- --------ALFIN1                        --------->ANAC58   --------->LBD16                       ----- -->At4g35610                          --------->ANAC58  --------->ANAC46                      <----- ---->RAV1(2)               --------->HSFB2a(2)          <---------LBD16               <xxxxxxxxxxxxx ---At4g35610               <---------HSFB2a(2)         <---------LBD16 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   gccacctcctatcatgaagagagccaatctctcgaaaccagaagcaagaacttcataacccggcaagccaaaccacaagaagaaacttgaaaacgcttcc  8977700         ------>NtERF2                                                   --------->ANAC58        --------->DEAR3(1)                                               --------->ANAC58      ------>NtERF2                                                  ------>ZmHOX2a(2)     --------->DEAR3(1)                                             --------->CCA1(2)   xxxxxxxxxxxxxxxx>smallRNA(i)                                     <------ZmHOX2a(2)  ----------->HVH21                                                --------->ARR14(2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------ARR14(2) ------->ARR14(2)                 <---------HSFB2a(2)              --------->AGP1 --------ARR14(2)             <---------ANAC58                     <---------ARR11(3) ----->LBD16         ------>NtERF2--------->HSFB2a(2)              --------->ARR11(3) -----HSFB2a(2)     ----------->HVH21                            ----------->ARR10 -----ANAC46        --------->DEAR3(1)                         ---------->DOF2 ---->HSFB2a(2)    --------->ATERF1(1)--------->CCA1(2)  --------->MYB52(1)                   <------ ----LBD16  ------>NtERF2     <---------ANAC46      --------->DAG2 <---------AGP1       --------->ALFIN1 xxxxxxxxxsmallRNA(si3)       <---------ANAC58     ---------->DOF2--------->RVE1(1)--------->ANAC46   ggatgcgacgacgacgactgaggcgaccaattgcgtctagatagaagccttcaaaaagctaacagaaaagatctgaagcaagtacaaggagtgaagccta  8977800                                                                                           ----------                                                                                       ------->GAMYB                                                                                      <------------AtMYB77                 <---------HSFB2a(2)                                                  <---------MYB55(2)                 --------->HSFB2a(2)                                                  --------->MYB46(3)          --------->TOE1(3)                   --------->At4g35610                    ------>MYB46(1)          --------->TOE2(3)                   <---------At4g35610 ------>MYB46(1)    ------>MYB83         <---------HSFB2a(1)                 --------->ANAC58     -------->P <------ZmHOX2a(1)-------         <---------HSFC1(2)                  --------->ANAC58     ------>MYB83       --------->At4g35610    --------->HSFB2a(2) --------->ANAC58   <------ZmHOX2a(1)     ----------->RAV1(1) --------->ZAT2    <---------HSFB2a(2) --------->ANAC58<------ZmHOX2a(1)       --------->AtMYB61   --------->MYB52(1) ---MYB59--------->HSFC1(2)      ---------->DOF2               --------->MYB46(3) --------->MYB46(3)   acctctcgagaaccttcatcgagaacaagcacgacgaaagaaggaggaagctatcaaacacagaaaccaacaccaaggaggagaaccaactgccaacaaa  8977900                                      --------->ZAT2                           --------->DAG2                    ---------->DOF2   <---------ZAT2     --------->ANAC58      --------->AtMYB61   --------->DAG2        --------->MYB52(1)                ---------->DOF2 ->RAV1(1)  ------->GAMYB---------->DOF2      --------->MYB46(3)             <------NtERF2 --->DOF2----------->RAV1(1)    --------->GLK1(1)        --------->ANAC58 <---------LBD16        <---   gaagactaccacaacagaaacagaaagaaaagggacatccagttgggaaccaatggctgaagcaaggagaccaagaggcggaaggaaaggcatggtctgg  8978000                             --------->ANAC58                             --------->ANAC58                                                  ------                         --------->ANAC58                                                --------->At4g35610                         --------->ANAC58                                                <------NtERF2                         --------->ANAC46                                                <---------At4g35610                       <---------ALFIN1                                                <---------ZAT18                       --------->AtMYB61                                             <-----------HVH21                       ----------->RAV1(1)                                         ------>ZmHOX2a(2)                      --------->ANAC46                                           --------->ARR14(2)                    <---------ALFIN1                                             <---------ARR11(3)                    --------->AtMYB61                                          ----------->HVH21    -                    --------->DEAR3(1)                                       ----------->RAV1(2)    <                   --------->MYB46(3)                                        <---------At4g35610    <                   <---------MYB55(2)                                        <---------ANAC55(2)    -                  ------>MYB46(1)                                            --------->ANAC55(2)   <-                  ------>MYB83                        --------->MYB46(3)     --------->At4g35610 ----                 --------->ANAC46                    -------->P           <------ZmHOX2a(2)    ------                --------->MYB46(3)                  --------->MYB52(1)   --------->ARR11(3)    ------ ------ZAT18   --------->DEAR3(2)             ---------->DOF2            <---------ARR11(3)  <-------   gcacaaactcaacgagaacccaccaccacacaaacaatggcatagaaacaaagctaaccacttgaacggctacaagatcacctgatctgtccgctccaac  8978100                                                     <----------DOF2      <---------GLK1(2)                           <-----------GT1   --------->TOE2(3)                           <---------ICU4 >MYB83                                        <------------CBF -------->ARR14(2)                           --------->AHL20(1) ---------ARR14(2)    --------->WRKY38(1)    <---------YAB1 ---------ARR11(1)    --------->WRKY12       <---------AHL20(2)            <-----------GT1 -------->GLK1(2)  <------MYB83             --------->YAB1             --------->AHL20(2) --------ARR14(1)  <------MYB46(1)          --------->AHL20(2)         <---------AHL20(2) --->GAMYB        --------->MYB59      ------------>CBF           <---------MYB52(1) -->P <---------ICU4<-------GAMYB      ------>ZmHOX2a(1)         <----------DOF2                   <- >MYB46(1)  ---------->DOF2           --------->TOE2(3)         --------->TOE2(3)           <-------- --ALFIN1--------->TOE2(3)<----------DOF2  <---------ATHB12  <-----------GT1                ---------   cgaatccataatctcaaagttcggttgactttctattaatcctcaataatattgactttctattttcctttatttttttacatctattttgtttcatttt  8978200                              <---------ANAC46                        <---------YAB1    --------->AHL20(2)                       <---------AHL20(2) <---------AHL20(1)          <---------AHL20(2)  <---------ANAC58          <---------AHL20(2)                 --------->AHL20(2)      ----------->GT1  --------->AHL20(2) <---------AHL20(2)                          ------------>CBF --------TOE2(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <---------YAB1 -------AGL15   <-----------GT1   --------->REM1(1)<---------MYB52(1)        <----------DOF2  <------ ------>AGL15 <-----------GT1 <---------ANAC58    <-------GAMYB     <-------GAMYB <-------GAMYB   taagaaaaatgtttattttccccatttttatggcttacatctattttatttcggttatttattcgatttcggttgtattctttcggttatcaattttttc  8978300                                                                                    <----------DOF2                                                          <----------DOF2       <---------GLK1(2)      <-----------GT1   ---------->DOF2            ------------>CBF     <---------AHL20(2)  <---------AHL20(2)  <---------HSFB2a(2)      <---------ANAC58         --------->AHL20(2)  --------->AHL20(2)  <---------YAB1           <---------ANAC58        --------->AHL20(2) -----GT1    <---------AHL20(2)                <---------ANAC46        <---------AHL20(2)        <---   aagtttaatttctatttagttattctgaaagttcgatttgattttagttccgtttcaattctttcggttttaaaaaaatttagatactttcagtatgttc  8978400                                <---------------AGL15                                <----------DOF2                                --------------->AGL15                               <-----------------AGL2                               <-----------------AGL1                               <-----------------AGL3                              ---------->ID1                  --------->ZAT14        ----------------->AGL1       ------------>CBF   <---------DAG2---------->ID1                              ----------->GT1     <----------DOF2      <----------DOF2<-----------------AGL1                    --------->DAG2 -------DOF2<---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(i)<----------DOF2         ---------->DOF2   ttttatactttcaatttatctacagtccctttttctttttttggcccatttgggttttgacttttgaatacaacaataggcccataaagtaaaaaacgta  8978500                                      <---------MYB52(2)                                      --------->MYB46(3)                                 --------->bZIP60(2)                                    <-------TEIL                               ----------->RAV1(1)                                     --------->CCA1(2)                         <---------AHL20(2)                                           <---------ARR11(3)                        --------->AHL20(2)                 <---------HSFB2a(2)  --------->ANAC58 <---------ZAT14        <---------AHL20(2)       <---------ALFIN1               --------->ANAC58    <   tggttcagtgactaaacaataactaaattaatgccacataacaaaccattaccacctcgtttgggaagactcactagttggcaaacaagatacaagttat  8978600  Previous    Next  AGI:  At3g24610.1    Description:  kelch repeat-containing F-box family protein. Identical to Putative F-box/Kelch-repeat protein At3g24610 [Arabidopsis Thaliana] (GB:Q9LV41); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14288.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 8975373    to: 8978109    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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