Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------ZAT18                                                                      <---------ZAT14                                                                      --------->ZAT18                                                                    --------->ZAT18                                                                    <---------ZAT18                                                                   <---------ANAC58                                                                   <---------ANAC46                                                                   <---------ANAC58                                                               ====================bZIP_DOF                                                               ====================bZIP_DOF                                                               --------->TGA1a                                                               --------->O2              --------->TOE1(2)                                <---------TGA1a                      -              <---------LBD16                                  <---------O2                        <-              --------->TOE2(2)                               ------>MYB83                  ---------             ----------->RAV1(2)                              ------>MYB46(1)               <--------             <---------ZAT2 ------->TEIL                  <-----------GT1   <---------TOE1(2) <------     <---------MYB46(3)   <---------ZAT18                <-----------GT1<----------DOF2  <---------ANAC46    --------->ALFIN1      --------->ZAT18   --------->ETT(2) <---------ALFIN1          <---------ZAT14  <---------ANAC46       --------->ALFIN1   <---------ETT(2)--------->MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(i)   gttggagtggatggaacctgggaacaagtggaccttggaatgtctgtagacaaatttgtttacccacttgtgtgctcttatgttccaagtttagtgcatt  8970300    ----------->GT1                                                          <---------WOX13(1)    -- -------->ATHB12                                                     --------->YAB1    <---------YAB1 --------YAB1                                 <-----------GT1     --------->YAB1      <---------ARR11(3) >ZAT18                           <---------ANAC58             <----------DOF2        <---------GLK1(2) -ZAT18                           <---------ANAC46         ---------->ID1  --------->ATHB12   ------- ----DOF2      --------->ANAC46   <---------ANAC58        <-----------GT1 <---------YAB1    <--------   tttgattagtatattctacaaaacctgtaatctgtttcttgcatatttatacccttgttttttctcttttatcatgttgattgaacaagattattaactc  8970400                                                                                               ------                                                                                               ------                                                                                             ------->GAMYB                                                                                            ---------                                                                                           --------->MYB52(1)                                                                                          ------->GAMYB                                                                                          --------->MYB55(1)                                                                                         <---------MYB55(2)                                                                                         <---------MYB52(2)                                                                                         <---------MYB111(2)                                                                                         <---------MYB46(2)         --------->ARR14(2)          --------->GLK1(2)                                   <---------MYB111(1)         <---------ARR14(2)          <---------ARR11(3) --------->ANAC58            --------->ANAC58 ------->ANAC46                      <---------ARR14(2) --------->ANAC58            --------->ANAC46 -->ZAT6 <---------GLK1(2)           --------->ARR14(2) --------->ANAC46            --------->ANAC58 ---GT1 <------ZmHOX2a(1)   <---------ICU4    ---------->DOF2         <----------DOF2    --------->MYB46(3)   tccacaactaggattctcttattgctctgatcatgtcagtatctgtataaaagtgtccaagccattgtgttcctttttaacagagaacgcaactaccgac  8970500                                                                                 ------->TEIL                                                                                 <---------ARR14(2)                                         <---------ATHB12                        --------->ARR14(2)                                        ------>MYB46(1)                         <---------CCA1(2)                                      <---------MYB59                       <---------ANAC46                                     --------->MYB46(3)                     <---------ANAC58 >MYB46(1)                         <-----------GT1                 --------->ZAT14 >MYB83                        <---------TOE2(3)                   <---------ZAT18                  - >DEAR3(2)               --------->ZAT18------>MYB83         <-----------GT1<---------ANAC58---------   ttctcacaacatatcaaatgccaaatgtgaactaatgtaaccaaacaatgttttttggataattcacattgcacaaatgcttgtatctgtagtttccaat  8970600                                                                 <---------AHL20(2)                                                                 --------->AHL20(1)                                                                 <---------AHL20(1)                                                                --------->YAB1                                                           ------------>CBF                                                  --------->AHL20(2)            --------->ANAC58                                                  <---------AHL20(2)            --------->ANAC58                                                 --------->AHL20(1)            *TSS                            <----------DOF2      <---------AHL20(1)           ---------->DOF2                           ------>ZmHOX2a(2)     --------->AHL20(2)        --------->HSFB2a(2)   ---------->DOF2       <---------ARR11(3)      <---------AHL20(2)        --------->LBD16   <-------GAMYB -------->TOE2(3)        --------->ARR11(3)--------->At5g28300  --------->AHL20(2)           <------- --->CBF    --------------------->WRI1    ----------->GT1 --------->ANAC46 <---------HSFB2a(2)    <--   tttcttaaagggtgttttggacatttcgatctttttttttgatatggtaaataaaattacaaacaattatatttttccgagaaagccattgtttcagttg  8970700                                         <----------DOF2                                    <---------MYB52(1)                                   ------>NtERF2                                  --------->RAP2.3(2)                                  --------->DEAR3(1)           <---------ARR11(3)    --------->RAP2.3(1)           --------->ARR11(3)   --------->LBD16          --------->GLK1(1)     ------>NtERF2                                                   <----          <---------GLK1(1)     <---------ATERF1(1)                                           <------         <---------ARR11(3)    --------->ANAC46      <---------YAB1  <---------GLK1(1)       --------       <---------YAB1          --------->DEAR3(1) --------->ARR14(2) --------->GLK1(1)   ------>ZmHOX2a(1) --At4g35610                  <---------LBD16     <---------ARR14(2)<---------GLK1(2)  --------->YAB1 -------YAB1                --------->ANAC46     <---------CCA1(2)--------->LBD16--------->TOE2(3)   atgatggtgatgatatctcttcacttctctactccgccgctagcttttctcaaatctgattccaattccagatttctcaagaaccctaatcctaatttta  8970800                                   --------->TGA1a                                   --------->O2      --------->ANAC58           --------->MYB52(1)                     <---------ZAT18      --------->ANAC58           <---------ALFIN1                    --------->LBD16      --------->ANAC46          <---------ALFIN1               <---------AHL20(2)    <-----------GT1            --------->MYB46(3)  <---------LBD16 --------->DEAR3(2) -------GT1                   --------->ANAC46    --------->MYB52(1)--------->TOE2(2)             <-- ---AHL20(2)            <----------DOF2          <---------ALFIN1<-----------GT1                <---- ->AHL20(2)             =====================bZIP_DOF--------->LBD16--------->TOE1(2)           <----   tccaattcaccccaaaatcccaacttcttttcccccaacgtctcaatttcaacaccggaacaaatttaaaccggcgaactctgagttgctatgggattaa  8970900                                                      <---------DEAR3(1)                                                      <---------ANAC46                                                     <---------ABI4(1)                                                     <---------At4g35610                                                     --------->ATERF1(1)                                                     <------NtERF2                                                    <---------ATERF1(1)                                                    <---------RAP2.6(1)                                                    ------>NtERF2                                                    <---------RAP2.3(1)                                                    <---------RRTF1(1)                                                    <---------ORA47(2)                                                    <---------ERF1                                                   <---------RRTF1(2)                                                   <---------RAP2.3(3)                                                   <---------RAP2.6(2)                                                   <---------ANAC46                                                   --------->ATERF1(2)                                                   <---------RRTF1(3)                                                   <---------DREB2C(2)                                                   <---------ANAC58                                                   <---------RAP2.3(2)                                                   <---------ANAC58                                                   <---------DEAR3(1)                            <------NtERF2          <---------ATERF1(2)                            <---------MYB52(1)    <---------ABI4(1)                           ------>NtERF2          --------->ATERF1(1)                           <---------RAP2.6(3)    <------NtERF2                           <-----------HVH21     <---------ATERF1(1)                          --------->bZIP60(1)    <---------MYB46(3)                          --------->RAP2.3(2)    <---------ERF1                          --------->DEAR3(1)     ------>NtERF2                          <---------bZIP60(1)    --------->ABI4(2)                          --------->RRTF1(2)    --------->ALFIN1                          --------->bZIP60(2)   <---------DEAR3(1)                          --------->RRTF1(3)  <---------MYB46(3)                          --------->RAP2.3(3) <---------DEAR3(2)                         --------->RAP2.3(1) <---------DEAR3(1)                         <------NtERF2    <---------DEAR3(1)                         --------->RRTF1(1) --------->ATERF1(1)                         --------->ORA47(2) <------NtERF2                         --------->ERF1   --------->DEAR3(1)             --------->YAB1                        ------>NtERF2   --------->LBD16--------->LBD16--------->YAB1                        <---------RAP2.3(1)<---------ATERF1(1)  <---------MYB46(3)        -----------                        <---------ATERF1(1)------>NtERF2<------NtERF2<---------YAB1      ----------->GT1                       --------->ANAC46 ------>NtERF2--------->At4g35610<---------YAB1--------->ALFIN1                      <---------At4g35610 ----------->HVH21    --------->ALFIN1     <---------bZIP60(2)            --------->MYB52(1)         <---------DEAR3(1)<---------ARR14(2)   <---------TOE2(3) ----ZmHOX2a(1)       --------->ATERF1(1)--------->ATERF1(1)--------->ALFIN1---------->DOF2      ---- -----TOE1(3)        <---------ATERF1(1)<---------ATERF1(1) <---------AtMYB61--------->DAG2<------ZmHOX2a(1) -----TOE2(3)       <---------DEAR3(1)<---------LBD16<---------LBD16 --------->ICU4 <---------ANAC46   ggattcaagtgagacaacgaagtctgcgccgtcattagactccggcgacggtggcggcggagatggtggtgatgatgataaaggtgaagtggaggaaaaa  8971000                    <------MYB83                <---------MYB46(3)                --------->ATHB12           --------->LBD16          --------->HSFB2a(2)          <---------HSFB2a(2)                                                      <---------MYB52(1)          --------->ANAC46     --------->TOE2(1)                                 ----------->GT1          --------->ANAC55(2)  --------->TOE1(1)                            <---------ANAC58    <---------DAG2<--------P  <---------LBD16                               <---------ANAC58    <----------DOF2 <------MYB46(1)                    ---------->ID1       <---------ANAC46     ---- >GT1    <---------LBD16  <-----------GT1            <-----------RAV1(1)   <------NtERF2<---------AHL20(2) ----->MYB52(1)<---------AtMYB61                     --------->MYB52(2)  <---------DEAR3(1)      <---   aacagactttttccggaatggttggattttacctcggatgatgcacagactgtgtttgtggctatagctgtatcgttggcgtttcgttattttatcgcag  8971100      <---------ARR11(3)      --------->ARR11(3)      --------->AHL20(1)     --------->CCA1(2)    <---------ARR11(3)                  <-----------RAV1(1)    --------->ARR11(3)            <----------DOF2      --------->MYB52(2) ----->ARR14(2)            ------->TEIL<---------TOE2(3)            --------->ARR11(3) ------ARR14(2) <----------DOF2------>ZmHOX2a(1)    <---------GLK1(2)          <----------DOF2 <-----   aaccaagatatattccttctttgtctatgtatcctacttttgatgttggagacagattagttgcagagaaggtattgttttctttatattagtttagctt  8971200  Previous    Next  AGI:  At3g24580.1    Description:  F-box family protein. Identical to Putative F-box protein At3g24580 [Arabidopsis Thaliana] (GB:Q9LV45); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G19470.2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G19470.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 8969169    to: 8970305    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g24590.1    Description:  signal peptidase I family protein. Identical to Chloroplast processing peptidase, chloroplast precursor (PLSP1) [Arabidopsis Thaliana] (GB:Q8H0W1;GB:Q66GJ6;GB:Q9LV44); similar to signal peptidase, putative [Arabidopsis thaliana] (TAIR:AT1G06870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65515.1); contains InterPro domain Peptidase S26A, signal peptidase I; (InterPro:IPR000223); contains InterPro domain Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927); contains InterPro domain Peptidase S26A; (InterPro:IPR014037); contains InterPro domain Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056) Range:  from: 8970679    to: 8972175    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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