Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          =======================HOX2a_HOX2a       ========================HOX2a_HOX2a       <------ZmHOX2a(2)      <---------ARR14(2)      <-----------ARR10      <---------ARR11(3)      <---------ARR14(3)      --------->ARR11(3)      --------->ARR14(3)      --------->ARR14(2)      --------->AGP1     --------->GLK1(1)     <---------GLK1(1)    ----------->ARR10   <------NtERF2  --------->LBD16                          <---------AtMYB61 <---------ANAC58                         --------->ATERF1(1) <---------ANAC46                         <-------GAMYB <---------ANAC58                         <------NtERF2 ---------LBD16                          <---------ORA47(2) -------->ATERF1(1)                      <---------DEAR3(2) ------NtERF2                           <---------DEAR3(1) -------->HVH21                         --------->ALFIN1 ------>ALFIN1                          <---------DREB2C(2) -------DEAR3(1)                       <---------ABI4(1)                                            - ----->ATERF1(1)                       --------->ZAT18                                              < --MYB83------>ZmHOX2a(2)       <------NtERF2                                                       - -----ZAT2                     --------->LBD16                                                    --- -----bZIP60(2)               <---------ANAC58                                                    <-- ---->ZAT2               --------->ALFIN1<---------MYB46(3)                    <---------ANAC46   <-- --MYB46(1)             <------ZmHOX2a(1)<---------ANAC46                    <---------MYB46(3)   <-- --->ALFIN1    <------NtERF2  <---------ANAC58  <------ZmHOX2a(1)           --------->ALFIN1     <--- ----AtMYB61<---------LBD16--------->ALFIN1--------->ALFIN1 <------NtERF2<---------DEAR3(1)<---------WRKY12 --->MYB111(2)--------->LBD16 <---------ANAC46<---------ANAC46      --------->At4g35610   <------NtERF2 ----DEAR3(1)<---------ANAC46<---------LBD16<---------MYB46(3)      <---------At4g35610  <-----------HVH21   gtggcggagatcttggcggagttgaaggagtggcgggagagggcggtggaggagaagaaggcctcaagggagaagacggtggaggggaaggcgtcaaggg  8861400                                       <------MYB83                                       <------MYB46(1)                                             <-                                      --------->ALFIN1                                        <------MYB46(1)                                      <---------AtMYB61                                       -------                                      <---------DEAR3(1)                                      <------MYB83                              <---------REM1(1)                                               <------                              ----------->HVH21                                               -------          <---------ANAC46    --------->ALFIN1                                               --------          <---------ANAC58 <---------DEAR3(1)                                                --------         --------->ATHB12  <---------AtMYB61            <------NtERF2                        <------- -------->ALFIN1        <---------ANAC46 --------->ALFIN1                                   <-------- ---------REM1(1)       <---------DEAR3(1)              <---------At4g35610   --------->ALFIN1<------ ---------->HVH21       --------->ALFIN1 <---------ANAC46                     ----------->HVH21 ----- ------>At4g35610      --------->ATERF1(1)<---------MYB46(3)          ---------->DOF2    <---------bZIP60(1) -------At4g35610      <------NtERF2 <---------ABI4(1)  --------->At4g35610   <---------REM1(1)------ ----MYB46(1)        <---------DEAR3(1)<---------MYB46(3)      <---------AtMYB61   <------ZmHOX2a(1) ----MYB83<---------ANAC58<------NtERF2--------->MYB55(2)  <------ZmHOX2a(1)--------->At4g35610<----- ------DEAR3(1)   --------->ALFIN1 --------->ALFIN1  <------NtERF2 <-----------HVH21  --------->ALFIN1   aggtgaaggaatgcttggagatggaggcggaggtgaaggggtggtgggagacggaggcagaggagatggtgtcaaaggaggtgaaggagtgatggcaggt  8861500 <------ZmHOX2a(1)  --------->ALFIN1 --------ANAC46     <---------REM1(1)                                                              <- -->ZAT2            ----------->HVH21                ----------->HVH21                             <- ---At4g35610     <------MYB83                       <---------REM1(1)                             -- -->At4g35610     --------->At4g35610                --------->ALFIN1                             --- ->MYB55(2)       <------MYB46(1)                  <------MYB83 <---------ANAC46                  --- ->MYB111(1)      <---------At4g35610              <------MYB46(1)                          <-------- --MYB46(3)<---------WRKY12                        --------->At4g35610            <------ZmHOX2a(1)<- ---RAV1(2)<---------WRKY38(1) <---------ANAC46    <---------At4g35610         --------->At4g35610<-- ---ZAT2  --------->WRKY18(1)--------->ALFIN1     <---------DEAR3(1)   --------->ALFIN1    --------->WRKY18(1) ---->ALFIN1     <---------DEAR3(1)        <------NtERF2  <------ZmHOX2a(1) <------NtERF2 <---------- ->PIF5  <-----------HVH21  --------->ALFIN1<---------WRKY12  --------->ALFIN1 <---------At4g35610<-- --PIF5<------ZmHOX2a(1) <------ZmHOX2a(1)<-----------HVH21  --------->ALFIN1  <------NtERF2<--------   ggaggagaaggagtcaagggaggtgaaggagttgtgggagaaggcgtcaagggaggtgaaggagttgtgggagatggaggcagaggagaaggggtcaagg  8861600                                              --------->ALFIN1                                            <------MYB83                                            <------MYB46(1)                                           --------->MYB111(2)                                           --------->MYB46(2)                                           --------->MYB55(2)    <---------ANAC46                       <---------MYB46(3)   <------NtERF2                           <---------AtMYB61  <---------MYB46(3)                       --------->MYB111(1) --------->ALFIN1                         <--------P                  --------->ALFIN1 -----MYB83                               <---------MYB55(1)        <-------GAMYB -----MYB46(1)                          ------------>AtMYB15       --------->MYB55(2) ------->ZAT2                           ------------>AtMYB84       <---------DEAR3(1) ------>ALFIN1                          --------->MYB55(2)         <---------MYB46(3)      --------->ALFIN1 ------>MYB111(2)                       <---------MYB46(3)        <---------ANAC58      --------->ALFIN1 -WRKY38(1)            <------MYB83    <---------AtMYB61          <---------ANAC46      <---------DEAR3(1) --------ZAT2<---------ANAC58     <---------ARR14(2)              <---------ANAC58      <---------AtMYB61 -------DEAR3(1)       <------MYB46(1) --------->ALFIN1     <------ZmHOX2a(1)          <------NtERF2 -HVH21      <---------ANAC58     --------->MYB52(1)     <------ZmHOX2a(1)   --------->ZAT18  <------ -------AtMYB61<------NtERF2     <------ZmHOX2a(1)  --------->ALFIN1<------NtERF2    <---------DEAR3(1) -WRKY12     <---------ANAC46 <------ZmHOX2a(1)  <---------AtMYB61<---------DEAR3(1)<---------LBD16   gaggtgggggagaaggcgtagagggaggtataggaggaacggtggtaggtggaggtggaggaggaagggcgggtggaagggcagtaggcggaggtggagg  8861700                           <---------AtMYB61                      <------MYB46(1)                            <------ZmHOX2a(1)                      <------MYB83                            <------ZmHOX2a(1)              <-------                     --------->MYB46(2)                    --------->ATERF1(1)             --------->MYB52(1)                     --------->MYB55(2)            <----------CDC5                        -----------                --------->ZAT18    <------ZmHOX2a(1)       <------NtERF2                  --------->ALFIN1       <------NtERF2<---------MYB55(1)----------->HVH21  <---------ANAC46                 -----------      <---------MYB46(3)--------->ALFIN1       <---------At4g35610<---------ARR14(2)    --------->At4g35610     <---------ANAC58<---------MYB46(3)--------->MYB52(1)<---------DEAR3(1)            --------->ALFIN1     <---------ANAC46--------->MYB111(1)  ------->GAMYB <---------LBD16               <------ZmHOX2a(1)     <---------ANAC58--------->MYB111(2) <---------ANAC46--------->ALFIN1        --------->ALFIN1   - ---ANAC46 <------ZmHOX2a(1)  --------->ALFIN1 <------NtERF2--------->ALFIN1  <---------DEAR3(1)   --   gggaagggcgggaggaagggcagtaggtggaggtggaggagtaacgggcagaggctgaggcggaggaggaattgggagaggctgtggaggaggtgacgga  8861800                --------->ATERF1(1)                <------NtERF2                --------->RAP2.3(1)               ------>NtERF2               <---------ATERF1(1)               <---------RAP2.3(1)              <---------ANAC46              <---------DEAR3(1)              --------->DEAR3(1)              --------->RAP2.3(2)             <------NtERF2             --------->ORA47(2)             <---------ABI4(2)             --------->RRTF1(1)             --------->DEAR4(2)             --------->ATERF1(1)             --------->RAP2.3(1)             --------->ERF1            <---------ERF1<---------ARR11(3)            <---------DEAR4(2)            ------>NtERF2 <---------ARR11(1)            <---------ATERF1(1)            <---------RAP2.6(1)            <---------RAP2.3(1)            <---------ORA47(2)            <---------RRTF1(1)           --------->ALFIN1           <---------DEAR3(1)           <---------RAP2.6(2)           <---------RAP2.3(2)           <---------RAP2.3(3)           <---------RRTF1(2)           <---------RRTF1(3)          --------->ATERF1(1)          <------NtERF2   <-----------ARR10          <---------ABI4(1)     --------->LBD16      --------->ARR11(3)    <---------LBD16       --------->ARR14(2)   <---------LBD16--------->At4g35610                                                       ---------  --------->MYB52(1)----------->HVH21                                                    >>>>>>>>>>E2Fc <---------ALFIN1--------->DEAR3(1)                                                      >>>>>>>>>>E2Fa --ANAC46<---------ATERF1(1) *TSS  <---------MYB52(1)                                    >>>>>>>>>>E2Fd >HVH21 --------->ALFIN1 <---------CCA1(2)                    ---------->DOF2            >>>>>>>>>>E2Fe >TGA1  <---------DEAR3(1)<---------ARR14(2) --------->AHL20(2)    ----------->GT1 ---------->DOF2 -------->MYB46(3)<---------At4g35610----------->GT1    <---------ANAC46      ----------->GT1 ------->SPL7--------->RAP2.6(1) --------->ANAC46    ----------->HVH21  ---------->DOF2 --------->LBD16   gtaccaccgggaggcggcgccgatgacatatcttcccgctagtaaaaaaaaataagcgacgggataaagaagaaaaaagaatgttaaaagcgggaaaaga  8861900                                                                                                  ---                                                                                                  ---                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                           <-------TEIL                                                                                         --------->ARR14(2)                <------NtERF2                                                            <---------ARR14(2)     ------>ZmHOX2a(2)                                                                 ---------->TaMYB80    --------->GLK1(1)                                                --------->SPL7<------ZmHOX2a(1) ->DOF2        ------>NtERF2        <---------YAB1                   <---------ZAT14   <---------KAN4(2)   ggtctgatctctcttgccaccgagactagacttgagttttgattacttcaatctttttaaaaaacctttggtacaccgatatagaggagaatatacgtaa  8862000  <---------YAB1 ------>YAB1 ------>TOE2(3) >ANAC58                                                        --------->ZAT18 >ANAC58                                                        --------->ZAT14 -ANAC55(2)                                                     <---------ZAT18 >ANAC46                                            ---------->DOF2 >ANAC55(2)                                     ---------->DOF2 <---------ZAT14 >ANAC55(1)                               ---------->DOF2--------->CCA1(2)                       <---   tcttatttttgtatgagttatatagtttgtgttcttcttgcatcaaaagcgaaagaaagaaatgagagcacttactacattgacatttctccgatgttta  8862100                                                             --------->AHL20(2)                                                            --------->AHL20(2)                                                     --------->ANAC58                                                    <-------TEIL                                                    --------->SPL7                                                    ------->TEIL  <---------ANAC55(2)                                                    --------->SPL1(2)                                                   --------->SPL1(1)                                                   --------->MYB52(1)                                                  --------->TOE1(2)                                                  <---------SPL7  --------->ANAC55(2)                                                  --------->TOE2(2)                         <--------                                                <---------------AtSPL8                    --------->YAB1                                     --------->AtLEC2--------->ANAC58                  --------->WOX13(1)                            --------->YAB1      --------------->AtSPL3          --------->YAB1  <-----------GT1       --------->ANAC46        <---------------AtSPL3       --------->WOX13(1) <---- ------YAB1           --------->REM1(1)        <------------------SPL14  ----------->GT1 <---------ATHB12   ttattaactatctaacatcaagttacaccaaaataatccattcaaactgaaacgtacggacaataaataagtattttgttaatcatattcaatcaaggtt  8862200                                        --------->ANAC46                   --------->LBD16                                    <-----------GT1                   --------->GLK1(1)                              ----------->GT1                         <---------GLK1(1)                             <-------TEIL      --------->YAB1        <---------ARR14(2)   <-----------GT1        <---------HSFB2a(1) <---------ATHB12       --------->ARR14(2)   --------->MYB52(1)    --------->DAG2 --------->ANAC58             --------->ARR11(3)         <---- -TOE2(3)              ---------->DOF2  --------->ANAC58       <----------DOF2  <---------TOE2(3)  -- ---TEIL <----------DOF2 <---------------AtSPL8--------->AHL20(2)    <---------ARR11(3)<-----------GT1   cttaataacagctttaacaaaaaaaaaaaggttcgtaataacaggccaattatatcaatatggttctttcagatatccagataatgtttttgctcttcag  8862300  Previous    Next  AGI:  At3g24400.1    Description:  pseudogene, protein kinase family, contains Pfam PF00069: Protein kinase domain; blastp match of 72% identity and 1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876 unnamed protein product {Brassica napus} Range:  from: 8858491    to: 8861829    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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