Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <------NtERF2                                            ------>NtERF2                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------bZIP60(1)    --------->DAG2                           --------->bZIP60(1)   ---------->DOF2                        ----------->HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               --------->ATHB12                      --------->O2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)               <---------ICU4                      <---------O2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <--------HAHB4                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 <---------YAB1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                --------->ICU4                    --------->LBD16    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---------ICU4          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ARR11(3) <---------MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxx -------GAMYB<---------KAN4(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL20(2) --------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->AHL20(2) --------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <---------ICU4--------->YAB1 --------ANAC55(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------ANAC58--------->KAN4(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----ARR14(2)--------->KAN4(1)      <---------AHL20(2)                  --------->ICU4 --------->YAB1 ---->ARR14(2)<---------KAN4(1)     --------->AHL20(2)          <---------YAB1  --------->AtLEC2 ----   tccgttacaagtgagattattccgaagtgacatcaacatttaatgcccccaaaaagtttagatgtgactattgtcacaattaatgcaaaatcatcattac  8843300                           --------->ICU4                           <---------YAB1                    <---------YAB1                  <---------ICU4                 --------->ICU4                 --------->AHL20(1)                 --------->AHL20(2)                 <---------YAB1                                                             <-------TEIL                 <---------AHL20(2)                                             -------->ATHB1              <---------AHL20(2)                                                <---------ICU4              --------->AHL20(2)                                                --------->ATHB12             <---------AHL20(2)                                                 --------->ATHB51             --------->AHL20(2)--------->AHL20(2)                              --------->ICU4       -          --------->AHL20(2)   --------->YAB1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ------->TEIL          <---------AHL20(2)--------->YAB1          ---------->DOF2  <------ZmHOX2a(1)  ------->TEIL<     --------->AHL20(1)  <---------ICU4         <---------TOE2(3)  --------->LBD16      -------------    --------->AHL20(2)   --------->YAB1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxx    --------->YAB1-------->ATHB1      <---------AHL20(2)          <---------LBD16    <---------ANAC58 xxxxxxxxsmallRNA(i2) --------->YAB1  --------->AHL20(2)         --------->TOE1(2)   <---------ANAC58 ----->TOE2(3)--------->AHL20(1)     --------->AHL20(2)        ------->TEIL    <---------YAB1     <--   atcaaataatattaaaaaaattattaataataataaaaaaaaaatttgttgagataaagaagatgaacccaggaacaaagaattattgcgaacgtacatt  8843400                                                                                                    -                                                                                                    x                                                                                                   <-                                                                                                  ---                                                                                                  <--               --------->ARR11(3)                                                                 <--               <---------ARR11(3)                                                                 <xx          <---------ZAT6                                                                          ---  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <-- -------->At4g35610                                                                               --- ---------At4g35610           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxx -->AtSPL3--------->ALFIN1    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <----------DOF2               <--- xxxxxxx>smallRNA(se3)  <---------------AtSPL8<---------ANAC58  <---------ARR11(3)          xxxxxxxxx -------RAP2.6(2)------>ZmHOX2a(2)            <---------ANAC58  --------->ARR11(3)         xxxxxxxxxx   gctgctgaagaagtgttgatcttgtttttgtaccaagtttggagcattgctcgtgtaagtaatgaagttcttttaagaagttttttttatgtcatattag  8843500   <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ATHB12  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -----ZmHOX2a(2) ------>ARR14(2) -------ARR14(3)                                                                          --------->MYB59 -------ARR11(3)                             --------->GLK1(2)                   <---------WOX13(1) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------ARR14(2)                         --------->ATHB12 ------>ARR14(3)                 <---------GLK1(2)                             <---------ICU4 -------ARR14(2)       --------->AHL20(2)    --------->ARR11(3)               <---------YAB1 ------>ARR11(3)       <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ICU4     <--- xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR14(2)                      --------->YAB1<---------TOE2(3) ---ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <---------ATHB12     xxxxx xxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <<<<<<<<<<WRKY63    <---------TOE1(3) xxxxxxxxxxxxx>smallRNA(i2)   --------->YAB1 <---------ARR11(3)     ----------->GT1    xxxxxxxxxxxxxx   gatcttgattgtgttcgaactccatttttttatcagaatatttgcaaaatctatatttgtttgtttaaaatagtcaaatgataattggtatttaggttta  8843600                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                <----                                                                                            <-------GAMYB                                                                                           <------MYB46(1)                                                                                        <---------MYB52(1)                                                                                        <-------PIF5<                                                                                        ------->PIF5<                                                                                       --------->ZAT2                                                                                       <---------ZAT2                                                                             <---------AHL20(2) <----                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        --------->LBD16<---------At4g35610                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        ------>ZmHOX2a(1)  <------MYB83                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               <---------ANAC58      <-----------RAV1(2)                                                               <---------ANAC58      xxxxxxxxxxxxxxxx                                                               --------->ALFIN1 <---------YAB1  -----                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   -                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --                                                          <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     <---------MYB52(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-----     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->At4g35610 ----------->RAV1(2)--------->ALFIN1 ------YAB1--------->ETT(2)                       <---------At4g35610 --------->At4g35610<--------P<- xxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------->GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<------- xxxxxxxxx>smallRNA(se3)    <-----------TBP       <-------GAMYBxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <-   taaatgtgtagtatcgacattccatttgttttttatatgtatagtatttttcagttgcatttaatgtgtgtctcctgaatttatgatgcaggtgggttac  8843700              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------At5g28300         --------->ARR14(2)         <---------ARR14(2)      --------->ANAC55(2)     <---------LBD16            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->KAN4(2)             --------->ARR14(2) ---------KAN4(1)         <---------ANAC46 -------->KAN4(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                          <---------SPL7 ---------GLK1(1)        <---------MYB46(3)                                             <---------ZAT18 -------->GLK1(1)     <------MYB83--------->AtLEC2                                      --------->ZAT14 -----ANAC55(2)      <---------DREB2C(2)                                               <---------ANAC58 ----------TaMYB80   <---------DEAR4(1)                                                <---------ANAC58 ---------HSFB2a(1)  <---------DEAR3(1)                                                <---------ANAC46 -----ANAC46<-----------GT1    <---------ARR14(2)                                 --------->MYB52(2) xxxxxxx>smallRNA(si3)<---------DEAR3(2)                                      <---------AtMYB61 ---->ANAC55(2)      <---------MYB46(3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -------->HSFB2a(1)  --------->MYB55(2)                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->ARR14(2)    --------->MYB46(2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------->TaMYB80   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----LBD16  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ----------->GT1  <------ZmHOX2a(1)<---------MYB52(1) --------ARR14(2)   *TSS --------->MYB55(2)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-------GAMYB   -- --SPL7--------->LBD16<------MYB46(1)---------->DOF2        ------->TEIL   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----------ARR10    <---------ORA47(1)      <------ZmHOX2a(1)----------->RAV1(2)  <---------MYB46(3)<   ggatattcccgtatttaccatggtcggtgagtggaaatgcaaagaaggagaatggaaatttgaacctgaggaaggcatctttggtcgttgtgtacgcgtt  8843800                                                                             <---------ICU4                                                                             --------->ATHB51                        ------------------>SPL14                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->ANAC58                                             <--------HAHB4                --------->ANAC46                                            --------->ICU4                --------->ANAC58                                            <---------ATHB12             <-------TEIL            --------->HSFB2a(2)                  <---------------AGL15   ---             <---------REM1(2)   --------->ANAC46                         --------------->AGL15   xxx           <---------SPL7     --------->SPL7                             ----------------->AGL2 -----          <---------ANAC46    <---------ZAT14                            <-----------------AGL3------          <---------ANAC55(2) --------->ZAT14                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->KAN4(2)        <------          <---------ANAC58  <---------SPL7                           --------->WOX13(1)       <------          <xxxxxxxxxxxxxxxxsmallRNA(s)      <----------DOF2        <------ZmHOX2a(2)          <------         --------------->AtSPL3<---------ALFIN1                   <---------ARR11(3) --------->MYB52(1)        <---------TGA2(2) --------------->AtSPL3          --------->ZAT18----------------->AGL3------ ------->ANAC46<---------LBD16<---------ZAT18      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   xxxxxxxxxxxx ------ZmHOX2a(1)    <----------DOF2 <---------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------   caggaaaccatgacgtacacggactttgtccgtacactccgagaggctttcagtttgaagtccaccgagatcaatcccataattagctactggatgccgg  8843900                                                                                          <---------ARR11(3)                                                                                          <---------ARR14(2)                                                                                          --------->ARR14(2)                                                                                          --------->ARR11(3)                                                                                         <---------GLK1(1)                                                                                         <---------CCA1(2)       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                    <------MYB46(1)    <-----------HVH21                                                                  <------MYB83 -------->HVH21                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         --------->MYB55(2) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxx>smallRNA(i)                 <---------MYB46(3) ------>GT1                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------MYB55(1) --->LBD16                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------ANAC46 ---ANAC58                --------->ANAC46          <---------At4g35610            <---------MYB46(3) ---ANAC58              ---------->DOF2 >>>>>>>>>EIN3                           <---------ANAC58 ---ANAC46     <---------WOX13(1) ------>ZmHOX2a(1) --------->At4g35610         <---------ANAC58 >NtERF2    <---------YAB1--------->ANAC58        <-----------RAV1(2)           <---------ANAC46 xxxxxxxxxxx>smallRNA(fl3)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->MYB52(2) --LBD16  <---------At4g35610--------->DEAR3(1) <-----------HVH21              <-------TEIL  <-------   gtgaaatgtcagtgctgatagatactaaacgccctcctgtatacattgacagtcagatgggtctcgagacgttttttttggttcgtggtgggtatctttc  8844000                                            <---------ARR14(2)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                         --------->LBD16                               <---------MYB52(1)                      <--------ATHB1    --------->HSFB2a(2)                        <---------At5g28300                      --------->YAB1<---------SPL7                               ----------->HVH21                     <---------ATHB12   <---------HSFB2a(2)                  ---------->DOF2                     <---------ATHB51  <---------LBD16                      xxxxxxxxxxxxxxxx>smallRNA(i)               <----------DOF2     <---------ANAC58                        <---------HSFB2a(2)           <---------CCA1(2)       <---------ANAC58                        --------->HSFB2a(2) ---DOF2   ---------->ID1     --------->ZAT14                           --------->GLK1(2)    --------   tctcaacttgttcgtctctttcaataatacagtgaaggcgttcgggaatactgtctctaggtctcatggtgaagtttctgaaagtgaccgtgtgtttgac  8844100                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <---------At4g35610                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <------ZmHOX2a(1)                           <------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxsmallRNA(i)                         <---------TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        --------->YAB1    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->ICU4    --------->ANAC58        ------->GAMYB                     --------->YAB1      --------->ANAC58     ----------->RAV1(1)                     <---------ICU4 <------ZmHOX2a(1)  <---------------------WRI1           <xxxxxxxx      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxx --->HVH21          --------->ICU4  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <------ZmHOX2a(1)   agtgctacaaatgttgatgaaaataatgaggatgcagaggagcaagccgatgttgaagacgatacaacagaagaggatgaattggaggagggcaacgaag  8844200  Previous    Next  AGI:  At3g24365.1    Description:  transposable element gene. Mutator-like transposase family, has a 8.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 8843720    to: 8848121    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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