Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------------->AtSPL8                                                        --------->ARR14(2)                                                       --------->RVE1(1)                                                       --------->CCA1(2)                                                       --------->GLK1(1)                                                       <---------GLK1(1)                 --------->ANAC55(2)                                                      --------->ARR14(2)                 <---------ANAC55(2)                        <----------DOF2               <---------ARR11(3)                 --------->ANAC55(1) <----------DOF2  <---------YAB1                      --------->ARR11(3)                 --------->ANAC46 -O2           <---------MYB52(1)                   --------->ANAC58             <---------ZAT6 >O2          <---------RAP2.6(3)  <----------DOF2  --------->ANAC58           <---------At5g28300   tcactttcttagaagccgttgtgattcttttcaaagactttccatctctgagacaagatatcccctcagagtaccttctattactgtcaacacataacaa  8829300                                             --------->MYB46(3)                                            ------>MYB46(1)                                  --------                       --------->GLK1(2)    ------>MYB83                                  <---------GLK1(1)             --------->YAB1       <---------ARR11(3)                                      --------->GLK1(1)            <-------TEIL          --------->ARR11(3)    ---------->DOF2                 <------ZmHOX2a(1)       --------->DAG2 <---------GLK1(2)   --------->AtMYB61                         <-------TEIL      ---------->DOF2 <---------ARR11(3)  <---------MYB59   --------->ARR11(3) ---------->DOF2  -----   aatacaaaaaaagtttcataacaagattcttatcaagaactagaccaaacaccaaaatcaaagaaattgagttcaatattcaaaagtacaggaattcata  8829400        --------->GLK1(2)        <---------ARR11(3)                                                   <------ZmHOX2a(1) ->YAB1--------->RVE1(1)                                <------ZmHOX2a(1)  --------->ALFIN1 ---->AHL20(2)         --------->YAB1           --------->At4g35610    <---------LBD16              -   aaatacaaaaaatctgaacttgctaacatattagagaagattatacaaggagatgagaggattacagtagaattggggaggagggtttgagggaagagta  8829500                            --------------->AGL15                            <---------------AGL15                           <-----------------AG            <--------P                         ------->GAMYB                  --------->HSFB2a(2)                         --------->ANAC58               <---------HSFB2a(2)                         --------->ANAC58              <---------ANAC46                         --------->ANAC46            <---------ARR14(2)                         --------->DEAR3(1)          --------->GLK1(2)                         --------->DREB2C(2)         --------->ARR14(2)                         --------->RAP2.6(2)       <----------DOF2                        --------->MYB46(3)        <---------ANAC58                        --------->DEAR3(2)        <---------ANAC58                      <---------ARR14(2)        ------>NtERF2                    ----------->ARR10          <---------DEAR3(1)            --------->At4g35610              --------->MYB52(1)           <---------CCA1(2)          <------ZmHOX2a(1)----------------->AGL1<------NtERF2            <---------At4g35610   >>>>>    --------->CCA1(2) --------->ARR14(2)    ----------->HVH21            ------->TEIL        >>>>>>>> -------->ZAT18    >>>>>>>>>TBF1           --------->DEAR3(2)  --------->WOX13(1)  <---------ALFIN1>>   agtgcgatatgaggagcggaagaagaaccgccattttgggaatgaaacgacggcgtttctggtagcaatccaatgcatctctctcacactctgaagaaga  8829600                                                          <---------At4g35610                                                        <-----------RAV1(2)                                                      ------>NtERF2                                                      --------->LBD16                                <----------DOF2      --------->ANAC58     >>>>>>>>>TBF1              <---------DAG2       --------->ANAC58                          ------  >>>>>>>>>TBF1            <-----------GT1           --------->ANAC46                         ------- >>>>TBF1               <----------DOF2             <---------LBD16                          <------- >TBF1                 <---------DAG2          <----------DOF2     ------>NtERF2             <------- >>>>>>>TBF1        <-----------GT1   --------->HSFB2a(2) --------->At4g35610  <-----------GT1<------   agaagaagaagaagtagagttttcacctttcaccctttttctagggcttcttttcccgccagaagacgacgactatgcaattcacaatctcacagtcctc  8829700 *TSS                                                <------ZmHOX2a(1) >ZmHOX2a(1)                                      --------->YAB1 -------->AGL15                                  --------->ICU4      ---------->DOF2 ----------AGL1                             ----------->GT1<-----------GT1 ----------AG                            ---------->DOF2  <-----------GT1----------->GT1          <-- ---------AGL15              ---------->ID1<---------TOE2(3)   <----------DOF2                   ----   taatggaaaacatgttttctcttctcttcttgtcttcttagtttaaaggtaattaggattttagccttttaaaaagagtaatttctcatttgctccctat  8829800                                          --------->ATHB12                                         <---------ATHB12                                      --------->AHL20(2)                                      <---------AHL20(2)                                     --------->AHL20(2)                                <---------MYB59                             <-----------GT1                         --------->AHL20(2)                         <---------AHL20(2)     <---------MYB52(1)         <-----------GT1--------->AHL20(2)<---------ICU4     <----------DOF2 -------TOE2(3)         <---------AHL20(2)--------->YAB1  ------->TEIL                  <---------CCA1(2) ----->YAB1           --------->TOE2(3)--------->WOX13(1)<---------CCA1(2)    ---------->DOF2   aatgtttcaaattacattcttgttcattaatttaccaaaattaatcatcggctagttttgtatctttttggaatgtctaacaaagaacccatctctatga  8829900                                                                                   --------->TOE2(3)                                                                                   --------->TOE1(3)                                                            <------ZmHOX2a(2)    --------->ARR11(3)                                 ----------->GT1          <------ZmHOX2a(1)      <---------ARR11(3)                             --------->ICU4         ---------->DOF2             <---------GLK1(1)                             <---------YAB1    <---------DAG2               --------->YAB1                 <---------MYB52(1)            <----------DOF2        ----------->GT1               <   acacatctctaatctctcagttttgtttgtaaagattgtaatttctctgcttttcaaagaggatcaaaagttttgtaattagaaatcttaaaatgactat  8830000                                                                                                 <---                                                                                                 <---                                                                                                 ----                                              --------->YAB1                             --------->ALFIN1                                              <---------ICU4                           --------->ALFIN1                                   --------->ICU4--------->YAB1                        <---------ANAC46                                   <---------ATHB12                                  <---------ANAC46                              <---------------AGL15                                <---------ZAT14                      --------->TOE2(3)    --------->YAB1                          --------->ZAT18          --------->GLK1(1)   --------------->AGL15                                <---------ZAT18 ---------MYB52(1)    --------->YAB1     <---------YAB1                            --------->ZAT14   cagttgtttctgaattctatacaaacttaatactctaatgagtattaataataagaaaacaaaaccactaaatgtctagactcagtgcagtgtgtgagtg  8830100                                <---------HSFB2a(2)                                --------->HSFB2a(2)                             --------->ARR11(3)                           <---------HSFC1(2)                           --------->HSFC1(2)                       --------->ANAC55(2)                       --------->ANAC58                                                ---------->DOF2                       --------->ANAC58                                           --------->ANAC58                       <---------ANAC55(2)                                        --------->AtLEC2                       --------->ANAC46        --------->GLK1(2)           --------->ARR14(2) ------ANAC58       <---------ARR14(2)  <---------ANAC55(2) <---------WRKY12--------->CCA1(2)    >>>> ------ANAC58       --------->ARR14(2)  --------->ANAC55(2) <---------WRKY38(1)   --------->ANAC58--- ----->ALFIN1  ----------->RAV1(1)    --------->AHL20(2)   ------------>CBF<---------ARR14(2)   <----   tgtgtgtttgtttggcacaacaaatacgaaacatctagaattacataagaatttgtggtgagtcaatggatttatcagataggcatgcacaaagtgtttc  8830200  Previous    Next  AGI:  At3g24320.1    Description:  ATMSH1/CHM/CHM1/MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / damaged DNA binding. similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71487.1); similar to DNA mismatch repair protein [Lycopersicon esculentum] (GB:AAX53097.1); similar to DNA mismatch repair protein [Glycine max] (GB:AAX53095.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003); contains InterPro domain DNA mismatch repair protein MutS-like, N-terminal; (InterPr Range:  from: 8822986    to: 8829701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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