Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               ------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                            <--------                                                         <---------ZAT6                    --------->TOE2(1)                                                     <---------ZAT14                       --------->TOE1(1) ------>WRKY12                                       --------->ZAT14                      <---------HSFB2a(2) ------>WRKY38(1)                                    <---------SPL7                       --------->HSFB2a(2) ------MYB52(1)                                   <---------At5g28300                     <---------- -------CDC5                           <---------ALFIN1--------->SPL7              --------->YAB1 -ARR14(2)                     <---------ALFIN1  <-----------GT1                  <---------ATHB12 >ARR14(2)                   ------>ZmHOX2a(1) <---------WOX13(1)    <---------ARR11(3)   -----------   ttgagcctctgtaacgaaaacttctcttctcctccatctcccctccttgatttaccgtactgttgaatcgagataatatgtccaatcgtcttctcgtacg  8822400 --->ANAC58 --->ANAC58                             --------->TOE2(3) -->SPL7                              -------->P                                  <---------ZAT14 ---ZAT18                            ------->GAMYB    <---------ARR14(2)          --------->ZAT14 ---TOE1(2)                         <---------MYB111(2)                    <---------YAB1 -SPL7                              --------->MYB46(3)--------->ARR14(2) --------->YAB1            -- -----AtSPL3                     --------->MYB46(3)<---------ANAC58      --------->AHL20(2)      ---- ---->AtSPL3             <---------ALFIN1          <---------ANAC58  --------->AHL20(2)  <---------ZAT14   cttcttcccattctctcttcgtcttctccacttcaacaacaacctcatccatgtcgtaactgcaaatttcataaattataaaactgcagagtttagtaat  8822500                        <---------HSFC1(2)                        --------->HSFB2a(1)                        --------->HSFC1(2)                      <---------GLK1(2)                      --------->ARR14(2)                   --------->ANAC55(2)                   --------->ANAC46                   --------->ANAC58                                       ------->GAMYB                   --------->ANAC58                                      --------->MYB46(3)                   <---------ANAC55(2)                                 <-----------GT1                  <---------LBD16                                 --------->ANAC58              --------->ANAC46                                    --------->ANAC55(2)      --------->CCA1(2) <---------HSFB2a(1)                       --------->ANAC55(1)     <---------ARR11(3)--------->ARR14(2)                         --------->ANAC58                 <-     --------->ARR11(3)---------->TaMYB80                         <---------ANAC55(2)            <--- -------->DOF2--------->ANAC58                                  <---------ALFIN1                 ---- ----->YAB1   --------->ANAC58                              --------->MYB46(3)                  -----   caaaagagatataaacaagctacggaatctcccaatgcaatctgctaatagctctctaaacatccaacacgtataaccatctaatggtttctgtatgaat  8822600        <---------ICU4       <---------ATHB12   ------>ZmHOX2a(2)     --------->YAB1                                            ---------->DOF2   ====================HOX2a_HOX2a                                               ------>ZmHOX2a(2) --------YAB1    --------->MYB52(1)                                         <---------WOX13(1) ------ICU4     <------ZmHOX2a(1)      --------->ATHB12                   <---------MYB46(3)      --- ----->YAB1 --------->ZAT14          <---------WOX13(1)   <-----------HVH21 <--------P          ----- ---->ICU4  <---------ZAT14--------->At4g35610     --------->CCA1(2)<<<<<<<<<<<<<<<<<LFY--------->CCA1(2)   tatgatcgaatcactacaggaacggtatcagaagactcgattgatttgatgggatataagggtcacaaacttacattggttgatcgaaagagatgaagag  8822700                                                --------->CCA1(2)                                                <------ZmHOX2a(2)                                               <---------ARR14(3)                                               --------->GLK1(2)                                               --------->ARR11(3)                                               <---------ARR11(3)                                               <---------ARR14(2)                                               --------->ARR14(2)                                               --------->ARR14(3)             --------->YAB1                                               --------->AGP1               <---------YAB1                                               <---------AGP1            <------ZmHOX2a(2)                                             ----------->ARR10          --------->ARR11(3)       --------->YAB1              <---------TOE1(3)            <-----------RAV1(1) -------->GT1                      <---------TOE2(3)            --------->ALFIN1    ------>ZmHOX2a(2) ---->At4g35610                    --------->DAG2------>ZmHOX2a(2)      <---------ARR11(3)       ----   cggagaaaatgagaatgaaattgcgaaactagggtataaggttgaagaagatctgggaaccagagagtgttggagatcaatattgatctgtagaagacac  8822800                                                                                                  <--                                                                                                 ----                                                                                         <-----------              --------->LBD16                                                         ------------>CBF            <---------LBD16                                                      --------->ARR11(3)         <---------GLK1(1) *TSS                         <-----------GT1        <---------MYB52(1)----      <---------YAB1    ----------->GT1        <---------ZAT6                --------->LBD16    <---- ----->TOE2(3)<---------LBD16             <---------ANAC46                 <---------LBD16      <----   ctcaaattttgatttctggggaagaagagaaataactaaaaacgacgtagttttagataaaccatgtctattctaaacccggttatcttgcaattgctat  8822900 ----------CBF ----->YAB1                                                                         <---------YAB1 -CBF   ------------>CBF                 ----------->GT1<---------MYB46(3)    --------->ATHB12 ---->ATHB1                <---------MYB52(1)  <---------GLK1(2)            --------->ANAC55(2)  ---- -----ATHB12     ----------->GT1 ----------->GT1        ----------->GT1     <---------ANAC55(2)  <--- -----YAB1     <---------LBD16  <---------AHL20(2) <---------YAB1      --------->YAB1    ---------->DOF2   cattgtctggtccaatgtccggtttatcagttatttagttatatggtcatattcttattggttaaaatttctagcattacttattgatgaataaagaagt  8823000                                                                                  <------NtERF2                                                                                <---------RAP2.6(2)                                                                               --------->RAP2.6(3)                                                                 --------------->AGL15                                                                 <---------------AGL15            ---                                                                <-----------------AGL3            <--                                                                ----------------->AGL3          -----                         --------->TOE2(3)                      ----------------->AGL2       --------                        --------->ANAC46                        ----------------->AGL1       --------  <---------At4g35610   --------->ANAC58                        ----------------->AG <---------At4g35610  --------->At4g35610   --------->ANAC58    --------->ANAC58    <-----------------AG --------->At4g35610 ----->ZAT14         <-------TEIL           --------->ANAC58    <-----------------AGL1 ------->GAMYB ------ZAT14    ---------->DOF2        <---------YAB1       ----------->HVH21  <---------LBD16 ------   ttactgctgagttttgttcaaagtacacgttaatcggatttatgaaacgacaattacacagactgacccaaaattggtaattgcggcatccgacttaccc  8823100          <---------MYB52(1)         <---------RAP2.6(3)       --------->ANAC46        <---------ANAC58           --------->ANAC58        <---------ANAC58           --------->ANAC58 ------>ARR14(2)                  --------->RAP2.6(3)                         <---------ANAC58 -------ARR14(2)                 --------->MYB52(1)                           <---------ANAC46 ---->ANAC46         --------->TOE2(3)                                  --------->MYB52(1) ->MYB52(1)        --------->ARR11(3)                              --------->HSFB2a(2) >P     <---------ANAC46    ----------->GT1                        >>>>>>>ZML2<---------ANAC58 --->HSFB2a(2)     <---------ARR11(3)                              <---------HSFB2a(2)   gaactgcatgccgttttgcaaaatctcaaaatgaaaaacggcatggtttcttagtaatctactctagttctagcaaactgacttgttcaattgcacatag  8823200                                                                                            <--------                                                                                      <---------At5g28300                                                                                     --------->MYB52(1)                                                                                     <-----------GT1                                                                                --------->LBD16                                                                            <---------ARR14(2)                                                                           <---------SPL7   <--------                      <---------TOE2(3)                                   <---------HSFB2a(1)                  --------->At4g35610    --------->At4g35610              --------->HSFB2a(1)<-------                  <---------At4g35610  --------->ARR11(3)  ------->TEIL <------ZmHOX2a(1)  --------->ABI4(2)   agatgatcaactacaaacacagctaatgtttcaaactataagatgctgactacgtctgatgtactcaagcttgaggacgttccgaaattacggtgctttc  8823300  Previous    Next  AGI:  At3g24315.1    Description:  ATSEC20. similar to unknown [Populus trichocarpa] (GB:ABK93680.1); contains InterPro domain Sec20 (InterPro:IPR005606) Range:  from: 8820462    to: 8822827    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g24320.1    Description:  ATMSH1/CHM/CHM1/MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / damaged DNA binding. similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71487.1); similar to DNA mismatch repair protein [Lycopersicon esculentum] (GB:AAX53097.1); similar to DNA mismatch repair protein [Glycine max] (GB:AAX53095.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003); contains InterPro domain DNA mismatch repair protein MutS-like, N-terminal; (InterPr Range:  from: 8822986    to: 8829701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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