Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ICU4                                                           --------->YAB1                    --------                                                           --------->ATHB51                  <-------                                                           <--------ATHB1                   ---------                            <---------ICU4                <---------YAB1               <-------TEIL                           --------->ICU4                 --------->ICU4              --------->ARR14(1)                         --------->YAB1                 --------->YAB1                --------->CCA1(2)                   <<<<<<<<<MYB2                     --------->HSFB2a(2)             --------->ARR11(1)            --------->AHL20(1)                    ------>ZmHOX2a(1)                  <---------ARR14(2) ---->ATHB12--------->AHL20(2)                    <----------DOF2                    <---------GLK1(2) ----YAB1   <---------AHL20(2)                 <---------YAB1    <-----------GT1     --------->ARR14(2) --->ICU4  --------->AHL20(2)                 <-----------GT1   <---------CCA1(2)---------->DOF2   atttgaattacaaaaaaattggttttctcataatgagttatcttatattatccttttagaataattgtatccctactaaaaaaaaaagattcgattaaat  8774200                                                                                           <------MYB83                      --------->ATHB12                                                     <------MYB46(1)                      <---------ICU4                --------->DAG2                         ----------                     --------->ICU4                ---------->DOF2                        <---------TOE1(2)     ----------->GT1 <---------YAB1           <---------------AGL15             --------->ANAC46 ->AHL20(2)        >>>>>>>>>NAM      <---------HSFB2a(2)                      --------->ANAC58 --AHL20(2) <---------TOE2(3)        --------->HSFB2a(2)      <-----------GT1 --------->ANAC58 >AHL20(2)---------->DOF2      ---------->DOF2--------------->AGL15      --------->ALFIN1<--------P   ttcaatatggattaaaggaagggatgattactaaaaagtctagaatagcccaaaaaaggaggttttacaactagagtggcacacaaaacttgtaggttaa  8774300                                                                                        <---------ANAC58                                                                                        <---------ANAC55(2)                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                        <---------ANAC55(1)                                                                                     <---------MYB52(1)                                                                                   --------->ANAC55(2)                                                                                   <---------ANAC55(2)                                                                                <---------MYB52(1)                                                                              --------->TOE2(3)                                         <------ZmHOX2a(1)                  <-----------GT1                                        --------->ZAT18                     ---------->ID1                              <------ZmHOX2a(1)                  --------->AHL20(2)--------->ANAC46                             ----------->GT1                   --------->ANAC58<----------DOF2                            <---------TOE2(3)                  --------->ANAC58<---------DAG2     --- ->GT1                  <----------DOF2 <---------ZAT18   <-----------GT1  <-----------GT1        <--   ttcagtcatttctatctccaaaatagctttgaggaaaaatagaggactatgttgaatttgtaaccaagtaaatggtttttcctttacgttacgtttagaa  8774400                                                                ----------->GT1                                                                <---------ANAC46                  ---                   <---------YAB1                             ------->GAMYB                   -------         -------->HAHB4   <-------GAMYB                     <---------At5g28300               -------         --------->YAB1  <---------MYB46(3)                <---------DOF5.7(2)                -------        <---------ATHB12 ----------->GT1                   --------->MYB52(1)            ----------->HVH21        --------->ICU4------------>AtMYB77               --------->DOF5.7(2)             <---------ATHB12      --------->YAB1  ------------>MYB.PH3(1)           --------->TOE2(3)            <---------YAB1-- ------>ARR11(3) --------->YAB1                   ----------->GT1           --------->At4g35610------ -------ARR11(3)--------->ICU4     ----------->GT1<---------MYB46(3)      <-----------RAV1(2)<-------   gattttagtaatgatgctattatgagacggttagaaacagttaagagagaattggttacattaacggcgttaaaaatcaggtgtattttcaatgacccgc  8774500    ----------->HVH21  --------->ALFIN1                  <---------MYB52(1) ------->DOF2                      <----------DOF2 -->ANAC58                   <---------ARR14(2)                             --------->MYB52(1) -->ANAC46             <---------MYB52(1)              <---------YAB1  --------->AHL20(2)          <- -->ANAC58           <---------ANAC46                 <------------CBF <---------AHL20(2)   <-------- ------->DAG2        <---------ANAC58           ------>NtERF2          ----------->TBP      <-------- --->LBD16           <---------ANAC58     <-----------GT1   --------->MYB52(2)  ---------->DOF2    <- --LBD16      ---------->DOF2--------->ARR14(2)--------->DEAR3(1)------------>CBF           <--------   aaaagtgtgaccagagtaaagttccgtttagtatcggcgttatttaacgacgacgttattgttcgtttgcaatataaataacgaaagacggttttcttgg  8774600                                                 --------->TGA2(2)                                                <-----------HVH21                                                <-----------TGA1                                               <---------bZIP60(1)                                               <---------TGA1a                                               --------->TGA1a                                               <---------O2                                               --------->TGA2(1)                                               <---------TGA2(1)                                               --------->bZIP60(2)    <---------ZAT18                            --------->ANAC58    --------->ZAT18                            --------->O2    --------->ZAT14                            --------->bZIP60(1)            <---------ANAC58    <---------ZAT14                            --------->ANAC58               <---------ANAC58 --------ANAC58             <---------MYB52(1)<-----------STF1                <---------ANAC46 -ANAC58                    =============================bZIP_DOF      <---------ANAC58 -ANAC58               *TSS <----------DOF2   <------NtERF2   ----------->HVH21                     < --------ANAC58   <---------ATHB12           <---------ATERF1(1)       <---------ANAC58             - -ANAC46     <-----------HVH21               ------>NtERF2   <---------MYB52(2)                   <--   agcttgtgcactctctgtcactcattttccctttgtttgcacaatggcgacgtcatctctgaaactgaccagtgcttgtttcgtcttgctcttcatcttc  8774700     <---------ANAC58     <---------ANAC58    <------NtERF2  <---------RAP2.3(3) <---------ANAC58                --------->MYB52(1) <---------ANAC58           --------->LBD16 <---------At4g35610       --------->ANAC46                     <---------YAB1 --------->At4g35610  <---------ARR14(2)               <-------TEIL                  ---------------- ---------MYB46(3)    --------->ARR14(2)               <---------ZAT18          ------->TEIL -------->MYB52(2) --------->MYB46(3)  <---------ARR11(3)     --------->YAB1 <---------YAB1 -------MYB52(1) ----------->RAV1(1)------->GAMYB      --------->ZAT18       --------->ICU4         <   gttggctgcgttctcacagcaacaaatctccgaaacaacgaaatctctcgatcgaggtgcacatttataattcttcgtaatgaatgtctctaatctatac  8774800                 <---------ARR11(3)                <---------CCA1(2)               --------->AHL20(1)               <---------AHL20(1)                               --------->ATHB51               <---------ARR11(3)                               <---------ICU4               --------->ARR11(3)                              <---------YAB1              --------->AHL20(2)                               --------->ICU4         --------->TOE2(3)                                   --------->YAB1         <---------MYB59          ------>ZmHOX2a(1)         <---------YAB1 ------->TaNAC69(2)   <----------DOF2                 <-------TEIL      <---------TOE1(2)           - ---------CCA1(2)--------->ARR11(3)     <---------ZAT18--------->REM1(1)<---------TOE2(2)          <-   tcgtctctctacctaaatatatctcttttctgtttcctctagttcacattttaagctacattttcattatttcatatgttttctcagtttttcttagcat  8774900                                                                                ------->TEIL                      <---------ZAT18                                       <---------TOE2(3)       --------->ATHB12  --------->ANAC46 <-----------GT1                   <---------TOE1(3)    <---------ANAC58  <---------ZAT14   --------->HSFB2a(1)                <-----------GT1    <---------ANAC58  --------->ZAT14   --------->HSFC1(2)                <-----------GT1  <---------YAB1      --------->ZAT18  ------->TEIL                  ------->TEIL -------->YAB1    --------------->AtSPL8<---------HSFB2a(1)      <---------TOE1(2) --------YAB1     <---------------AtSPL8<---------HSFC1(2)      ------>ZmHOX2a(1)      <----------DOF2   tatcatgcttgatttgaaatgttgtacacttcacataaacgaattttctcgtcccttgaagttttcctatgtatatttaacgtatgtctcttttatgcga  8775000                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                         <-----------GT1             <---------ANAC46                                        <---------AHL20(2)          <---            <---------LBD16                                    --------->At5g28300  <---------ZAT2    <---------TOE2(3)                                        <---------DEAR3(1)     --------->ZAT2---   ---------->DOF2 --------->CCA1(2)                        ------>ZmHOX2a(1)    <------ZmHOX2a(1)<--   atttttaaagtagtctcggagatttaagctatggattttgaacttaaaactaatcttttttcctcggtgattttttttctataggaagctgaaaacagag  8775100  Previous    Next  AGI:  At3g24230.1    Description:  pectate lyase family protein. Identical to Putative pectate lyase 9 precursor [Arabidopsis Thaliana] (GB:Q9LRM5); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13710.1); similar to pectate lyase [Prunus persica] (GB:BAF43573.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 8774623    to: 8777414    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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