Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <---------ALFIN1                                                 --------->YAB1         <---------ARR11(3)                                               ------>MYB46(1)          --------->ARR11(3)                                    --------->ALFIN1                    <-----------ARR10                           --------->DAG2      ------>MYB83        <------ZmHOX2a(1)        ---------                <-------GAMYB --------->AHL20(2)<---------ATHB12  ----------->GT1<---------YAB1   ---            <---------ALFIN1----------->GT1   --------->WOX13(1) <---------TOE1(3)          ---------     --------->AHL20(2)   ---------->DOF2   --------->MYB46(3)   <---------TOE2(3)     <xxxxxxxxxxxxx   caaacaaaaaattcccaccgttgaaacaaaaagtaaatgtgtgtgaaccaatcaaaatcgttgaattaaggaaaaatctccacattatagcataccttat  8761000                                                                                                <----                                                                                              -------                                                                                              <------                                                                                             <-------                                                                                           <---------                                                                                           <---------ICU4                                                                                          --------->ICU4                                                                                     --------->ANAC58                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC55(1)                                                            <-----------GT1          --------->ANAC58     <---------CCA1(1)                                   <---------ICU4              --------->ANAC46     <---------RVE1(1)                                  --------->AHL20(1)        --------->ARR14(2)    <---------ARR11(3)                   ----------->GT1<---------ARR11(3)     <---------ANAC55(2) >TOE1(3)                        ----------->GT1        <---------AHL20(1)     --------->ANAC55(2)  < ------>GLK1(2)                 --------->DAG2          --------->AHL20(2) ------>ZmHOX2a(1) <------- >TOE2(3)                      ---------->DOF2   <----------ID1     <---------YAB1<---------ARR14(2)- xxxxxxxxxsmallRNA(si3)     --------->YAB1    ---------->DOF2     <---------MYB46(3) --------->ANAC55(2)   aatctggatattttctgctatatatgtctctaataaagtaaaattgtaaaaagaacaaaatattacagttgttattcctatacgtatacgtaataactat  8761100             <-------TEIL            --------->CCA1(2)            --------->ARR14(1)           <---------GLK1(2)           --------->ARR14(2)           --------->ARR11(1)         ----------->ARR10 -----YAB1 <---------ARR14(2) -------->AGL15 ---------AGL15                                   <---------ARR11(3) ----------AGL3   ------>NtERF2                   --------->ARR11(3)                              --- --GT1 --------->CCA1(2)      <-------TEIL        --------->GLK1(2)                             ----- ---------HSFB2a(2)       <---------TOE2(3)      --------->CCA1(1)                             <----- ----------AGL2  <---------ALFIN1 <----------DOF2--------->RVE1(1)       --------->AHL20(2) --------- -------->HSFB2a(2)       --------->MYB59      --------->AHL20(2)  ---------->DOF2       --------->WOX13(1)   ttttggaagataagattcgacacctatttaggttcacttttaaaccaaaaaaaatctctacccttgaaacaaagaataaatataagtaaaacaatcagaa  8761200           --------->AHL20(2)       <---------AHL20(2)                                                 ----------->GT1 <---------TOE1(2)                  <---------YAB1                 --------->AHL20(2) ------>ATHB12               <---------ALFIN1             <---------ARR14(2) ---->GLK1(2)          --------->ARR14(2)                 --------->ARR14(2) ----GLK1(2)<---------AHL20(2)   <---------YAB1           <---------GLK1(2)  --------->ARR11(3)     < >YAB1 --------->AHL20(2) --------->ANAC46        <---------AHL20(2)<---------AHL20(2)             --   tcgttggattaaaataaatctacaaaatactccacattatagtagagaacatataatctagatttgctattaaatatggtatcttgacaaatgtcaagac  8761300                  <----------DOF2       <-----------GT1              --------->YAB1            <---------At5g28300 <---------MYB52(1) --------->AHL20(2) <-----------GT1                                 --------->TOE2(3) -----------HVH21<---------ICU4     <----------DOF2                        <-----------GT1 ------->ANAC46 <---------YAB1 <---------MYB52(1)          --------->MYB46(3)          --------->TOE1(3)   cccgttacattttctatcatctttatataaaccgctagcttttaccctcttgttttgggcaaacaccaaaaacgtttttacttataaaacgttagaaaac  8761400                                           --------->ANAC58                                           --------->ANAC58                                           --------->ANAC46                                           --------->AtLEC2                                         *TSS                                --------->ANAC58                                --------->ANAC46                                --------->ANAC58                         <---------At4g35610    <---------ALFIN1  ------>ZmHOX2a(2)                         --------->At4g35610  ----------->RAV1(1) ==============================HOX2a_HOX2a                    <---------AtMYB61--------->MYB46(3)         --------->ARR11(3)        --------->ICU4 <---------ZAT18<---------ALFIN1          <---------ARR11(3)       ------>ZmHOX2a(1)   ttctctagtcatgttttatgcataggtcgctcacaagtcaccaccatgcaacactctcttcgttctgatcttcttccgacgaagacttctcctcgttctc  8761500                                                                           <---------ARR11(3)  ------                                                                         ------>ZmHOX2a(1)    <------                                                                   --------->HSFC1(2)        <-------                                                                  <---------ALFIN1           <-------                                                               <---------ETT(1)              <-------                                                             --------->MYB52(1)              <-------            ------->GAMYB                      <-----------GT1--------->DEAR3(2)             --------          --------->ANAC58                <---------YAB1    --------->CCA1(2)                --------          --------->ANAC58            <---------ARR14(2)   --------->ARR14(2)             --------->ARR14(2)        --------->MYB46(3)            <---------GLK1(2)    <---------ARR11(3)             <---------ARR14(2)        <---------ALFIN1              --------->ARR14(2)   --------->ARR11(3)           --------->LBD16      --------->HSFB2a(2)      <---------HSFB2a(2)         <---------ARR14(2)------>ZmHOX2a(2)<------      <---------HSFB2a(2)      --------->HSFB2a(2)  <----------DOF2<---------HSFC1(2) <---------LBD16   atttacttccacaacccaaaaatgcaaatatttctcgacgaattctcattaaccctttcaagataccgacacttcctgatctcacttctccggttccgtc  8761600      <---------At4g35610      --------->At4g35610   ---------->DOF2         --------->TOE2(3)  <---------MYB52(1)------->TEIL ----->HVH21        <---------ARR14(2) -----HVH21         --------->ARR14(2) --bZIP60(1)    ------>MYB46(1) --ANAC58       ------>MYB83 --ANAC55(2)   --------->MYB52(1)                    --------->ARR14(2)               <---------MYB52(1) --ANAC58     --------->TOE2(2)                      <---------ARR14(2)              --------->TOE2(3) ->ANAC55(2) <---------MYB52(2)                 --------->MYB52(1)                  --------->YAB1 <- ->bZIP60(1) --------->MYB46(3)             --------->GLK1(2)                  ------>ZmHOX2a(1)   -- -----TGA1   <---------MYB55(2)           <---------At4g35610                --------->ZAT18 ------>ZmHOX2a(1)   accggttaagctcaaaccaacgtatccaaacttaaaccttcttcagaagctagcggctacgatgctcgacaagattgagtcctctatcgttattcctatg  8761700                                   <---------MYB46(3)                                   <---------DEAR3(2)                                --------->LBD16                               <---------DEAR3(1)                            -------->P                            ------>MYB46(1)                            ------>MYB83                          --------->MYB46(3)                          --------->DEAR3(1)                          ------->GAMYB                          --------->AtMYB61                         --------->MYB46(3)                         --------->SPL7                         --------->DEAR3(2)                 ------>ZmHOX2a(1)<---------DEAR3(1)                --------->TOE2(3)<------NtERF2           <---------At4g35610<---------LBD16           <------NtERF2------>MYB46(1)         <---------ANAC55(2)           --------->At4g35610--------->DEAR3(2)--------->At4g35610          --------->ANAC58<---------MYB59       --------->ANAC55(2)          --------->ANAC58----------->HVH21     ----------->GT1   <---------GLK1(2)    ------>MYB83<-------GAMYB   <---------HSFC1(2) ------->TEIL                 <   --------->ARR14(2)  --------->ORA47(1)  <---------ICU4           <---------YAB1                ---   <---------ARR14(2) --------->DEAR3(1)   --------->YAB1          <---------TOE2(3)--------->MYB52(1) --------At4g35610   --------->MYB46(3)   --------->ICU4      --------->LBD16   <-------TEIL      <-- ------->At4g35610   --------->DEAR3(2)   <---------ATHB12  <---------LBD16<---------LBD16       ----   gagcagaatcgcccgcttcctaaaccgaccgacccggcggttcaattatcaggtaacttcgctccggttaatgaatgtccggttcagaacggtttagaag  8761800                                                                            --------->SPL7         --------->GLK1(2)                                                --------->LBD16        ----        <---------GLK1(2)                                                --------->RAP2.6(2)     ----       --------->At4g35610                                              <---------LBD16          <---       <---------At4g35610                                              --------------->AtSPL3   <---  <---------MYB46(3)                                                --------->DOF5.7(2)          ----  <------MYB83                                                      <---------MYB52(1)        -------  <------MYB46(1)                                                  <-------GAMYB              ------- <---------MYB46(3)                      --------->MYB52(1)        <-----------HVH21         <------- <---------AtMYB61                      ----------->HVH21       ------>NtERF2              <---------DEAR3(1) --------P                             --------->LBD16          --------->LBD16         ----------->HVH21 ------>MYB55(2)                      <---------ANAC55(2)      --------->ANAC46     <---------AHL20(2) -------MYB46(3)                      --------->ANAC46        <---------LBD16       --------->AHL20(2) ----->ALFIN1          ---------->DOF2--------->ANAC55(2)   --------->ARR14(2)     --------->AHL20(2)   tggttggtcagattccttcttgtctaaaaggagtttacatccgtaacggtgcaaaccctatgtttccgccgttagccggacatcatttatttgacggtga  8761900  Previous    Next  AGI:  At3g24220.1    Description:  NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6). Identical to 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplast precursor (NCED6) [Arabidopsis Thaliana] (GB:Q9LRM7); similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) [Arabidopsis thaliana] (TAIR:AT1G78390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71571.1); similar to putative 9-cis epoxycarotenoid dioxygenase [Daucus carota subsp. sativus] (GB:ABB52078.1); similar to Lactuca sativa 9-cis-epoxycarotenoid dioxygenase 4 (GB:BAE72093.1); contains InterPro domain Carot Range:  from: 8761441    to: 8763179    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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