Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------AHL20(2)           --------->AHL20(2)         <---------AHL20(2)            <---------AHL20(2)                         <---------ANAC58         --------->AHL20(2)          <---------YAB1                           <---------ICU4       --------->AHL20(2)          --------->YAB1                             --------->ATHB12     --------->AHL20(2)           <---------YAB1                             <---------YAB1     <---------AHL20(2)         ----------->GT1                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->AHL20(2)       <---------YAB1<---------YAB1                   --------->YAB1  <---------AHL20(1)     <---------AHL20(2)--------->ATHB51             --------->REM1(1)  --------->AHL20(1)  <---------ARR11(3)  <---------AHL20(2)            --------->ANAC46 --------->AHL20(2)   --------->ARR11(3) <---------AHL20(1)          --------->ETT(2) ----ANAC55(2)       <---------RVE1(1)--------->YAB1      xxxxxxxxxxxxxxxx>smallRNA(i) -TEIL <---------AHL20(2)--------->AHL20(2)--------->ATHB12      <---------AtMYB61<---------ANAC58  -   taaatatatatatatatatagagagattttaatattgttataatattattgcgatgtggttttggatgtggtctacatcatcattcgtgttctatacatg  8742900                                                                                          --------->O2                                                                                          ===========                                                                                          ===========                                                                                          <---------O2                                                                                          <---------TGA1a                                                                                          ===========                                                                                          --------->TGA1a                                                                                         <------NtERF2                                                                                        ------>NtERF2                                                                                       --------->DREB2C(2)                                                                                       --------->At1g77200                                                                                       ----------->HVH21                                                                                       --------->RRTF1(3)                                                                                       --------->RAP2.3(3)                                                                                       --------->DEAR3(1)                                                                                      --------->RAP2.3(1)                                                                                      --------->DEAR3(2)                                                                                      --------->ERF1                                                                                      --------->ORA47(2)                                                                                      --------->RRTF1(1)                                                                                      --------->ATERF1(1)                                                                                      <------NtERF2                                                                                      --------->RAP2.6(1)                                                                                     <---------RAP2.3(1)                                                                                     <---------ATERF1(1)                                                                                     ------>NtERF2                                                                                    <---------PCF2                                                                                    --------->DEAR3(1)                                                                                    <---------DEAR3(1)                                                                                    <---------ANAC46                                                                                   <---------ABI4(2)                                                                                   --------->ATERF1(1)                                                                                   <------NtERF2                                                                    --------->RAP2.6(2)--------->RAP2.3(2)                                                               =====================================bZIP_DOF                                                           --------->YAB1         <---------RAP2.3(1)                                                          <---------AHL20(2)      <---------ATERF1(1)                                                          <---------YAB1          <---------DEAR4(2)                       ----------->GT1                   <---------AHL20(1)       <---------ORA47(2)                --------->YAB1                    ----------->GT1   ----------->GT1--------->RAP2.3(1)          >>>>>>>>>>>>>>>>>LFY                <------ZmHOX2a(1)---------->DOF2   --------->ALFIN1  <---------YAB1--------->TOE2(3)         ------->GAMYB  --------->AHL20(2)      <---------DEAR3(1) ---------->GT1----------->GT1         --------->MYB52(1)--------->AHL20(1)    --------->ZAT2     ---   agttgtgattttctccaatgttaataagtgaatatcgaaatcaacggaggaatagaaaatataataaaagccgaaaaaccaaggtggcgccgacgtagca  8743000                ----------->GT1               --------->DAG2                --------->MYB52(1)       <----------ID1                   --------->ICU4           <------NtERF2      ----------->GT1              --------->ANAC46           <-----------HVH21     --------->DAG2                --------->ANAC58          --------->ZAT2     <---------------AtSPL8        --------->ANAC58        --------->LBD16    ---------->DOF2               <------NtERF2           <---------TOE1(1) ==============bZIP_DOF          <---------RAP2.6(3)      <---------TOE2(1)                   <------ ========================bZIP_DOF------>NtERF2         <---------ARR14(2)         --------->HSFB2a(2) ========bZIP_DOF               --------->DEAR3(1)     --------->ARR14(2)         <---------HSFB2a(2) ------->DOF2 ---------->DOF2  --------->DEAR3(2)     <---------GLK1(1)<---------------------WRI1   caaagaaaaagtacaaaaaagtcaaaactcgttgccgacgtaatgactatcggtgtaaatccgaggtcgcgacttcgaatcgttctaaaacccattttac  8743100                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              <<<<<<<                                                                                              =======                                                                                              <------                                                                                              -------                              <-----------GT1            ----------->GT1                      -------                           --------->bZIP60(1)      --------->AHL20(1)          ------->TEIL  <------                           <---------bZIP60(1)      <---------AHL20(2)  <---------YAB1        <------                           --------->TGA2(1)        --------->AHL20(2)--------->YAB1          <------                        <---------ATHB12        --------->AHL20(2)    <---------ICU4       ----------        <---------AHL20(2) <---------TGA2(1)   --------->AHL20(2)    --------->ICU4    <---------ANAC58 -----GT1           --------->MYB46(3)         <---------ATHB12    --------->YAB1      <---------ANAC58   atgctcccattttttttttcgaacaaatgatgtcacaatctcagagtcaataaataaaatggaaacaaataatcatcatatgaacttggtcttgccacgt  8743200 ------->PCF2 ------->ARR14(2) ------->TCP16(1) --------ARR14(2) ------->PCF5 ----->WRKY38(1) ----->WRKY12 ---->ALFIN1 --MYC3 ->MYC3 --MYC2 --MYC4 ->PIF5 --PIF5 ->MYC4 ->MYC2               --------->LBD16 -->TGA1a           <---------LBD16 <<<HY5            ------>MYB46(1)        <---------At4g35610                           --------->MYB46(3) ===================MYC_MYB         --------->ZAT6                                   --------->MYB46(3) ---PIF3(3)        --------->MYB52(1)     --------->At4g35610                      --------->TOE2(3) -->PIF3(3)  <---------MYB52(1)     <---------ALFIN1                               ------->GAMYB -->O2       --------->DOF5.7(2)  ------>MYB46(1)                                  --------->AtMYB61 ---ANAC46  <-------GAMYB         ------>MYB83              *TSS                  --------->MYB46(3) ---O2<------------CBF----------->GT1 --------->ANAC46    --------->LBD16        -------->P ---TGA1a   <---------RAP2.6(3) <---------MYB59          <---------ANAC46       --------->WOX13(1) == ------>PIF3(2)    ------>MYB83 <---------MYB46(2)  ---------->DOF2            --------->MYB46(3)  --   ggaccctccattgccgttaccttccggtgaaataccaaacactccgcttccacttagagccgtagaagagctactacttcatcaaccacaaccactatct  8743300                                                                                             <-------                                         <-----------HVH21                                  ------>NtERF2                                        <---------O2                                        <--------                                        --------->TGA1a                                    --------->DEAR3(1)                                        --------->ANAC46                                   <---------ATERF1(1)                                        <---------TGA1a                                    <---------ALFIN1                                        --------->ANAC58                                  <------NtERF2                                        --------->ANAC58                                  --------->RAP2.3(1)                                        --------->O2                                     --------->LBD16                               <---------At4g35610             ------>NtERF2            --------->ANAC46     --------->RVE1(1)         --------->At4g35610       <---------ARR14(2)            --------->MYB46(3)    <---------ARR11(3)         --------->ZAT2            --------->ARR14(2)            <---------MYB55(2)    --------->ARR11(3)        ----------->RAV1(1)       ------>NtERF2                ------>ZmHOX2a(1)    --------->GLK1(2)       <---------At4g35610       <---------ANAC58           --------->ARR14(2)   <---------GLK1(2)        --------->At4g35610      <---------LBD16           <-----------HVH21 ---- =========================HOX2a_HOX2a   --------->bZIP60(2) --------->LBD16<-----------GT1--------->DEAR4(2) ---->ZmHOX2a(1)   <------ZmHOX2a(2)  <---------ALFIN1<---------ANAC58  <---------GLK1(2)------>NtERF2   cctcaaaatctctctctaccgatcgatggaagcagcagtgccacgtctcgtcaattgcggaccggagccaattcgattctccgtctcctcccgccgctcc  8743400                                                                                               ------                                                                                               <-----                                                                                               ------                                                <-----------HVH21                             -------                                               --------->DEAR3(1)                             <------         --------->GLK1(1)             --------->ARR14(2)            <---------REM1(2)     --------->ZAT18      --------->LBD16                  <---------ARR14(2)            ------>MYB83          <---------ZAT18     <---------LBD16     <-----------GT1--------->GLK1(2)            ------>MYB46(1)--------->ANAC46    <---------LBD16--------->At5g28300 <---------GLK1(2)           --------->AtMYB61--------->ANAC58 --ALFIN1<---------GLK1(1)       --------->ANAC58            --------->TOE2(3)      --------->ANAC58 -At4g35610    <---------ALFIN1  --------->ANAC46           ------>ZmHOX2a(2)    --------->ZAT18    - -->ZmHOX2a(1)------>ZmHOX2a(1)  --------->ANAC58<------NtERF2------>ZmHOX2a(1)  <---------ZAT18   --   ttcgtctccgggattcctcaccgtaataaacgctctcgccagattctagccgtcgctactgatcctaaacctacacagactagtccacccaagtccacca  8743500         ------>ZmHOX2a(2)        --------->GLK1(1)        <------ZmHOX2a(2)        --------->HSFB2a(1)       ------->TEIL       <---------ARR11(3)       <---------ARR14(2)       --------->ARR14(2)       <-----------ARR10       --------->ARR11(3)      <---------ARR14(1)  --------->MYB52(1)  <---------DOF5.7(2) --------->ARR14(2) <---------WRKY12 <---------ARR14(2) --->AtMYB61 ----ALFIN1                                                                       <---------At4g35610 --->DEAR3(1)                           <---------WRKY38(1)--------->ZAT14        ------>NtERF2 -->MYB46(3)                    ---------->DOF2            <---------ZAT14  ------>MYB83       <----- ---MYB55(2)                <-----------HVH21              <---------SPL7   -------->P    <---------YAB1 -------->DOF5.7(2)     <---------DEAR3(1)           >>>>>>>>>>>>>>>>>LFY   ------>MYB46(1)    <----- ------->At5g28300     ----------->RAV1(2) --------->MYB46(3)              ------>ZmHOX2a(1)   <-----   ccgtaaacggatcttcttctccatcgtctgcgtcaaaagtagtcaacaacaatgtttccactgtacgatttctactcctacctctgccgattatgttatg  8743600                                                                                        <---------TOE2(3)                                                                                       --------->MYB52(1)                                     <---------ANAC46                                  <-----------GT1 ----TOE2(3)                         ----------->GT1                         <---------ZAT14       -- ----TOE1(3)              <---------YAB1     --------->YAB1    <----------DOF2         <---------DOF5.7(2) ----YAB1   --------->AHL20(2)     ----------->GT1 --------->TOE2(3)     <---------------AtSPL8------   gttcaattgagcaatttcatagaaaatttctattggattgtgtaaaattataacctcgaattttggtttatggcaatggtacagagaattaacgatgtat  8743700                                                                                        --------->ARR14(1)                                                                                       --------->ARR14(2)                                                                              --------->GLK1(2)                                                                             <---------GLK1(2)            <---------------AtSPL8                                       ----------------->AGL1   <--            <---------------AtSPL3                                  <---------ANAC58   --------->ARR11(1)    ----------->GT1                                                 <---------ANAC58   <---------GLK1(2) -------->DOF2      --------->At4g35610                             <---------ANAC46   <---------ARR14(2) ->TEIL  ---------->DOF2                    <---------MYB52(1)    <----------DOF2     <------ZmHOX2a(1)   caaaagagattaaaagagtacgagctcaaatggaagaagatgaacagttatctgtgttgatgagagggcttcgtggccagaatttgaaggattcggtttt  8743800  Previous    Next  AGI:  At3g24190.1    Description:  ABC1 family protein. similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G79600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68804.1); similar to ABC1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22014.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ77896.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain ABC-1 (InterPro:IPR004147); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 8743260    to: 8747908    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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