Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->ARR14(2)      <---------HSFB2a(1)      --------->HSFB2a(1)                                                           --------->ANAC58      <------MYB83                                                              <-----------TGA1      <------MYB46(1)                                                <---------ANAC58    ------>MYB46(1)   <------ZmHOX2a(1)                                                 <---------ANAC58    ------>MYB83 -------->At4g35610                                              <---------MYB52(1) --------->ANAC58 ---------At4g35610                                         <-----------GT1    --------->ANAC46 ----ARR14(2)                                    --------->ATHB12<----------DOF2<-----------HVH21<--- --->ARR14(2) <-----------RAV1(2)     <------ZmHOX2a(1)    <---------CCA1(2)   --------->bZIP60(2)   tcagaggaaggtttcgccagaagatagatgagacagagaaggactataaactcattgaattgtatccctttgcttccatcaacgtcacaccaactatata  8705000                                                      <---------At4g35610                                      ------>ZmHOX2a(1)                                    <XXXXXXXXXXXXXXXXXXXXMIR395B/C/F                    <---------ARR11(3)                                    <XXXXXXXXXXXXXXXXXXXXMIR395A/D/E                <--------HAHB4                             <----------DOF2<---------ICU4 ------>ZmHOX2a(1)        --------->YAB1  -  <-----------HVH21        --------->At4g35610        --------->At4g35610          <---------YAB1   < --------GT1               <---------At4g35610        <---------ZAT2         <---------MYB52(1)     -   aacctttcacttcttcatccgataaactcagctttagttcctctaaacatttcttcagctcctcgatatcgattgtcccgtttgtatcattatctgcgaa  8705100    --------->At4g35610    --------->LBD16                                    --------->ANAC55(2)   --------->ANAC46                                    <---------ANAC55(2)      --------->HSFC1(2)  <---------LBD16--------->DAG2       --------->HSFB2a(1)                    <------ZmHOX2a(1) ------>TEIL    ---------->DOF2       <---------HSFB2a(1)         <----------DOF2 ---------ARR14(2)            --------->DAG2     --------->AHL20(2)    <---------At4g35610 -------->ARR14(2)           ---------->DOF2 ---------->DOF2   ------>ZmHOX2a(1)<---------HSFC1(2)   tgtatccgcagaacaaaaaaaagttcaaaactaaagtggaatcttgctaaagaaaatacttaatccttcttttagcttaggaaacttcaagaaaaaatgc  8705200                      <---------SPL7                     <---------ANAC46                     <---------ANAC58                   <---------At5g28300                                               --------->ATHB12                   ------->TEIL                                                     <---------YAB1               <---------------AtSPL8                                               --------->ICU4               <---------------AtSPL3                                             <---------ICU4          --------->ANAC58                                                       <---------YAB1          --------->ANAC58--------->ATHB12                                       --------->ICU4      --------->ARR11(3) <---------YAB1                   ------>ZmHOX2a(1)--------->HSFC1(2)   --------->YAB1 <-----------GT1                 --------->TOE2(3)        <---------HSFC1(2)   <---------GLK1(2) <---------ANAC58   <---------At4g35610             <------ZmHOX2a(1)   ttcaagaatatcaagaaaatgtaccgtatgattcgaaaacgcttctgatgtttcttaatccttctcttagcttaggaaacttcatgattattgaatccat  8705300                                                        --------->ZAT2                                                        <---------HSFB2a(1)                                                        <---------HSFC1(2)                                                        <---------ZAT2                                                        --------->HSFC1(2)                                                   --------->AtLEC2  <---------ARR14(2)                   --------->LBD16                --------->LBD16    --------->ARR14(2)                  --------->LBD16                <---------ANAC58   --------->ZAT2                  <---------ANAC46               --------------------->WRI1              <-----------HVH21        --------->ANAC46--------->ANAC58             ----------->HVH21     --------->GLK1(1)   --------->ANAC58           ------>ZmHOX2a(1)    ------>NtERF2    <---------ANAC46   <---------ZAT2         ----------->RAV1(2)  <---------LBD16    <---------ANAC58   <---------At4g35610 <----------DOF2 <---------LBD16--------->LBD16<---------At5g28300  --------->At4g35610       -------   agactttaaactcctgtgtcccggataaatactccggctctccaccattttccgtgcaagcttcgcatccagctctgcatacttcttgttgttctccgag  8705400        --------->At4g35610     --------->ZAT2     --------->At4g35610                                                                  --------->CCA1(2)     <---------ZAT2        --------->ANAC46                    --------->YAB1         --------->HSFB2a(2)     <---------At4g35610<---------REM1(2)                   --------->TOE1(3)         --------->HSFC1(1)   --------->ANAC46    ------>ZmHOX2a(1)             ------->TEIL                     <---------HSFB2a(2) -->LBD16 ---------->DOF2<---------ALFIN1         <---------YAB1                      <---------HSFC1(1)   ttaacacagcagcaaagcatgtttcctacacggttttttgtatttcaaaactatgaatcaaaccataagaacatagcaaatgaaatttcgagaaatgaga  8705500                            ---------->DOF2                    --------->DAG2                       <-------GAMYB               <---------ANAC58       ---------->DOF2                      --------->MYB52(2)           <---------ANAC58    --------->YAB1      ----------->GT1 <---------MYB46(3)           <---------ANAC46---------->DOF2      ---------->DOF2    --------->YAB1<---------YAB1           <------ZmHOX2a(1)  ---------->DOF2      --------->ICU4 <--   actcactcatgttaattctgatgtttgttgaaaagatggatgagaggaacaaggcgtaagtagataaagtaaagcataaagagtaatgaagaaaggcatt  8705600                                                                              <----------DOF2                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                            <---------RVE1(1)                                                                           --------->ARR11(3)                                            <---------ICU4                 --------->AGP1                                         --------->YAB1             <---------YAB1                                      <----------DOF2               ------------>CBF               <-         ---------->DOF2     <---------AtMYB61             --------->YAB1  <---------AGP1          <-   ----------->GT1         <----------DOF2 <---------YAB1 <---------YAB1   <---------ARR11(3)      -- -------YAB1   ---------->DOF2    <------NtERF2 ------------>CBF<---------GLK1(2)          <---------   acgaatagtatcaaagttaaaggcttaaactttggtggccctttcatcatttcaatgtttattatagattatcaatagatctttttcttatgtctttata  8705700          <-----------GT1         <--------HAHB4                                         --------->AHL20(2)     --------->TOE2(3)            --------->ATHB51                                      <---------AHL20(1)   ------->TEIL                   --------->YAB1                                        --------->AHL20(1)  ---------->ID1                  <---------ICU4           --------->ZAT6              --------->AHL20(2) --------------AtSPL8             --------->ATHB12   <---------TOE2(3)      --------->REM1(1) --------------AtSPL3            --------->ICU4----------->GT1          --------->At4g35610 ------------->AtSPL8            --------->AHL20(2)---------->DOF2      <---------At4g35610   <------ -DOF2<----------DOF2          --------->YAB1 <---------TOE2(3)---------->DOF2     --------->AHL20(2)   gtttgtacctttaaacctttctcttgaatacaagaataattagaggcaaaggttaaaggaaacactaaagcttcagcttcaacattgaaatatatataca  8705800                                                                --------->ANAC58                                                      <------NtERF2                                                    <---------ZAT18                                                    --------->PCF2                                                  --------->ANAC58                                                  --------->ANAC46        <---------ZAT6      <------                                                  --------->ANAC58 ---------->DOF2     --------->ZAT6                                            -------->HAHB4      --------->ANAC58    <---------CCA1(2)                                            --------->YAB1  --------->ANAC58    <---------ARR11(3)  --------->ZAT18                          <---------YAB1   --------->ANAC58    --------->ARR11(3) -TEIL                                   --------->YAB1   ---------->DOF2 ----------->GT1    <-------   tgagtaggctaagatgaaaatgtgatgacaagtttgtatcgaataataatacaggcccctcaaagcaagtaaagaagagttaaatcttatctctaccttt  8705900  Previous    Next  AGI:  At3g24110.1    Description:  calcium-binding EF hand family protein. similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G26470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43549.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 8704436    to: 8705420    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g24120.1    Description:  myb family transcription factor. similar to UNE16 (unfertilized embryo sac 16), transcription factor [Arabidopsis thaliana] (TAIR:AT4G13640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43550.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 8705753    to: 8708198    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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