Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------LBD16                                                                         --------->GLK1(2)                                                                        --------->ARR14(2)                                                                        <---------GLK1(2)                                                                     <---------ANAC46                                       <---------ICU4               <---------LBD16                           --------->YAB1                          --------->ALFIN1                        <---------GLK1(2)   --------->At4g35610   <---------MYB52(1)                     --------->YAB1    --------->YAB1        <---------ARR14(2)               --------->ANAC58  <---------ICU4              --------->GLK1(2)               --------->ANAC58  --------->YAB1              --------->ARR14(2)         ----------->RAV1(1)               <---------ANAC55(2)  <---------ICU4          <---------GLK1(2)--------->LBD16               --------->ANAC55(2)  --------->YAB1          --------->ARR14(2) --------->ARR14(2)               --------->ANAC55(1) <---------YAB1           <---------ARR14(2) <---------ARR14(2)         ------>ZmHOX2a(1)<-------TEIL<---------YAB1       --------->At4g35610<---------MYB52(1)    -         <---------HSFB2a(2)    <---------YAB1           --------->YAB1 <---------ARR14(2)       ----         --------->HSFB2a(2)  <---------ICU4----------->RAV1(2)  --------->LBD16--------->MYB52(1) <-        --------------->AGL15 --------->YAB1<---------At4g35610<---------LBD16<---------SPL7   <-----   caattggtttcctagacaagtaatcagattcatcatcatcatcatcatctgaatcactatcagattccggtgcggattccggtaccggtgcaacaggttc  8635700                                                          <---------At4g35610                                                          <------NtERF2                                                        <------NtERF2                        <----------DOF2                --------->LBD16              <------MYB83                             <---------At4g35610             --------->MYB59                           --------->At4g35610                       ---- -------->YAB1<------MYB46(1)                        <---------LBD16                       <---------At4g35610 ----->WOX13(1)     --------->REM1(1)              <-----------RAV1(1)     <------------------------ANAC81 --------ATHB12     <---------ALFIN1    ---------->DOF2------>NtERF2    ------>ZmHOX2a(1) ------->TEIL --TEIL      <---------AtMYB61   ------->TEIL   <----------DOF2<----------DOF2<----------DOF2  <-----   aatcaaatgtgtagtttggtctacacctttgaatgtagcttcaaaagctgcttttgccgcagcgtctttctctccttcgtctttgatttttgcatcttcc  8635800                                            <---------ARR11(3)                                     <---------ARR14(2)                              --------->At4g35610 --------->ANAC58                              <---------At4g35610 --------->ANAC58                             --------->GLK1(2)------>ZmHOX2a(2)                            <---------GLK1(2)<------ZmHOX2a(2)                     --------->MYB46(3)--------->MYB46(3)         --------->DAG2                    -------->P--------->ZAT2<---------ARR14(2)    --------------->AtSPL8       --------->AtLEC2----------->RAV1(1)  --------->ARR14(2)    <---------------AtSPL8 ----->LBD16     <---------ANAC58    --------->ARR14(2)          ---------->DOF2<-----------GT1 ----LBD16       <---------ANAC58--------->At4g35610          --------->YAB1   <-----------GT1   gcatgtttcatccaaatgggcttaccaccagaagctgcagaaccacgatctgaagccattacaactataaagtaccaatttttatcttcttcaatctctc  8635900                                  --------->YAB1                     <---------HSFB2a(2)                     --------->HSFB2a(2)---------->DOF2             --------->TOE2(3)   <---------ATHB12                   --------->AHL20(2) ----------->GT1     --------->At4g35610        --------->ANAC46        --------->GLK1(2)  ---------->DOF2     <---------At4g35610    <-----------GT1--------->At4g35610  <---------YAB1  --------->CCA1(2) <--   aaatgagagctaaatccctaattcgagaatttacaatcaacaagaagcagagcctaagattccattaccattaactagaaagataagaatggtgaaatcg  8636000                                                                       --------->ARR14(2)                                                                       <---------ARR14(2)                                                                       --------->GLK1(2)                                                    *TSS               ------->TEIL                                                    >>>>>>>>>TBF1     <---------CCA1(2)                                              >>>>>>>>>TBF1     --------->DAG2                                            ------------------------>ANAC81                                           >>>>>>>>>TBF1----------->GT1<---------ARR11(1)                                         ------------------------>ANAC81                                        >>>>>>>>>TBF1  >>>>>>>>>TBF1  <---------ARR14(1)          <---------AtLEC2             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               --------->AHL20(2) -------TOE1(2)                 <---------ATHB12 >>>>>>>>>TBF1---------->DOF2              <---------AHL20(2)   aaggtagaatttgcaggtctagggtttctatgaaatcaagaagaagaagaagaagaagaagaaaaaaaggtcgaatcttttatctaatggtttttaattt  8636100                                                                                         ------->MYC2                                                                                         <-------MYC2                                            --------->AHL20(1)                           ------->MYC3                                            --------->ARR11(3)                           <-------MYC3                                            --------->AHL20(2)                          <---------ANAC55(2)                                            <---------AHL20(2)                          =============                                            <---------AHL20(1)                          --------->ANAC55(2)                                            <---------ARR11(3)                          --------->ANAC46              <----------DOF2       --------->PCF5                                      <---------TGA1a           <---------AHL20(2)       <---------PCF2                                      --------->TGA1a           <-----------GT1          --------->TCP16(1)                                  <---------O2        <---------ICU4           --------->ALFIN1                   ------>ZmHOX2a(2)   --------->O2 <---------HSFC1(2)            <-----------RAV1(1)           ------->TEIL        <---------ICU4------ --------->HSFC1(2)           <------------AtMYB77        --------->ANAC55(2) --------->HSFB2a(2)   agaggcttcttaattactttgctatatttgcaactgtggtccctaatatatttcaaacttatgtatttgatctcatacttccaaaattacacgtgaatcg  8636200                                                             <----------DOF2               <---------AHL20(2)                       ------->TEIL        --------------------->WRI1                    --------->ZAT14        <----------DOF2                               <---------ZAT14    ----------->GT1    ---------->ID1            <---------GLK1(2)     --------->ZAT6--------->YAB1                 ----   <-----------GT1            --------->ARR11(3)    --------------->AtSPL3                     <----- ==================bZIP_DOF <---------TOE2(3)       --------------->AtSPL8         <---------TOE2(3) --->YAB1     --------->AHL20(2)                  --------->MYB52(1) ---------->DOF2  <---------ANAC46   gaatttttctctttgatttaatggcatatttagattttggtcatttattccataactgtacttctttatcaaaaagagtataactatggtttgtgtttta  8636300                                                                                     --------------->AtSPL8                                                                           --------->DAG2                                                                          ---------->DOF2                                                                      --------->ANAC58                                                                      --------->ANAC58                                                              <---------ANAC58       <---------------AtSPL3   --------->AHL20(2)     --------->GLK1(2)         --------->AtLEC2  --------->ANAC46   ------->TEIL ----->ANAC46    <------ZmHOX2a(1)        --------->TOE2(3)   <---------ANAC46      <---------ANAC46 ------GT1       <----------ID1         <---------AHL20(2)    <---------ANAC58     <-------TEIL     -   ctccattaactagaatagaggaacaaagaatttggagattatttcattagttctatgcacaaatgggtgtataagcaaaagtagtttcatgtacttctcc  8636400              ----------->GT1                                                                  ------            --------->ARR14(2)                                                                 ------            <---------ARR14(2)                                                                <------           <------NtERF2                                                                      -------          <---------MYB46(3)                       <---------TOE2(3)                      <----------         <---------ANAC58            <---------ARR11(3)        <------ZmHOX2a(1)          -----------         <---------ANAC46            --------->ARR11(3) XXXXXXXXXXXXXXXXXXXXX>MIR840   --------->ATHB12         <---------ANAC58    --------->ALFIN1    ---------->DOF2                      <---------MYB52(1)        <---------LBD16   --------->GLK1(2)     <---------AHL20(2)                   <-------GAMYB -------->AHL20(2)       <---------GLK1(2)  <---------------AGL15                <-----------HVH21   gattatatatggcggatagtaacatcagaatgtgttgaagatgttgatatataaaggaaacttaaggacataaactagacttgtgtcagttattggtaca  8636500                                        --------->ANAC58                                        --------->ANAC58 --->ANAC58                          ------->GAMYB                                         ---------- --->ANAC58                        -------->P                       --------->ZAT18    <---------ARR14(2) ---ZAT18                         ------->GAMYB                     <---------ZAT14  <---------MYB46(3) -->ZAT18                   <---------At4g35610                     --------->ZAT14 --------->ALFIN1 -----AtSPL8     ---------->DOF2 --------->MYB46(3)     <------ZmHOX2a(1)        <---------AtMYB61 ---->AtSPL8 <----------ID1 --------->At4g35610      --------->YAB1 <---------ZAT18 <---------AtMYB61   caattccaaagtattacaacaaagagttgcagataacaacccaagacaaaaacaataaggagatagaaactgcacaaactcttgaggtggttcttggtac  8636600  Previous    Next  AGI:  At3g23900.1    Description:  RNA recognition motif (RRM)-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22229.1); contains InterPro domain Filamin/ABP280 repeat (InterPro:IPR001298); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Immunoglobulin E-set (InterPro:IPR014756); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Immunoglobulin-like fold (InterPro:IPR013783) Range:  from: 8631613    to: 8636052    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g23910.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24255.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43499.1) Range:  from: 8636434    to: 8639449    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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