Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------AHL20(1)                         <---------AHL20(2)                         --------->AHL20(2)      <----------DOF2    --------->AHL20(1) -----------GT1         --------->AHL20(2)                                  --------->AHL20(2) -----AHL20(1)   --------->ARR11(3)                           <---------MYB52(1) ---->AHL20(1)   <---------ARR11(3)                      <-----------GT1    <---------AHL20(2) --->AHL20(2)   --------->YAB1  <<<<<<<<<<WRKY26  <---------YAB1       <---------AHL20(1)   ---------   tataacaactttgatcaaagatactattaaattgatcaacttagacaaaattttgatattcaccattagttaacatatttatatgtaagtttgtaaaaga  8624400                                --------->TOE2(3)                               ----------->GT1                               --------->ANAC58                               --------->ANAC58                               --------->ANAC55(2)                               <---------ANAC55(2)                               --------->ANAC46                               --------->ANAC55(1)                                           <-------                              <-------TEIL                                           --------->AHL20(2)                   <---------MYB59                                                  <---------YAB1                   --------->TOE1(3)                     --------->YAB1          <---------YAB1               --------->MYB46(3)               ----------->GT1                  <---------AHL20(2)         ------------------------>ANAC81       <---------TOE2(3)              --------->AHL20(2)        --------->YAB1     --------->CCA1(2)  <-----------GT1                 <---------AHL20(2)<----  ----------->GT1  --------->TOE2(3)          --------->MYB52(1)        --------->ANAC58 <---------AHL20(2) ->DOF2--------->ICU4 ---------->DOF2  ----------->GT1   <---------ICU4 --------->ANAC58--------->AHL20(2)   aatatagaaataatcaaacaacctaaaagaaatacgtaaattagaaaataacgttacaaaaatgacctatgtactagcaattttttattatttaatattt  8624500                                      --------->HSFB2a(1)                                     <-----------ARR10                                     --------->ARR11(3)                                     <---------ARR11(3)                                     --------->ARR14(2)                                <---------RAP2.6(3)                                <-----------HVH21                               --------->RAP2.6(2)                               --------->RAP2.3(2)                            --------->DEAR3(1)                                                   ----                         --------->YAB1                      --------->GLK1(2)              <--------                  ----------->GT1<------NtERF2      <------ZmHOX2a(2)                  <---------RAP2.6(3)                 <---------TOE2(3)   <---------ARR14(2)------>ZmHOX2a(1)              <---------MYB46(3)              <----------DOF2  --------->RAP2.3(3) <---------ARR14(2)              --------->DEAR3(1)  ---------->DOF2<---------TOE1(3)  <---------CCA1(2) --------->TOE2(3)         --------->YAB1  <---- --ICU4      <---------ANAC58--------->At4g35610   --------->ARR11(3)        --------->WOX13(1) ----- -------GT1  <---------ANAC58<---------At4g35610   --------->ARR14(2)    ----------->GT1<---------MYB52(1)   acaaaaaagacacttgctttaggttaatcacagccgtcaaatcttcccaatacgatcctcaaaattctgttcgtatagttaatcacagccgttagattcc  8624600                                                                           --------->MYB46(3)                                                                          -------->P                                                                          ------>MYB83                                                                          ------>MYB46(1)                                                                         --------->MYB52(1)                                                                         --------->MYB55(1)                                                                        <---------MYB111(1)                                                                        --------->MYB46(3)                                                                        <---------MYB55(2)                                                                        <---------MYB46(2)                                                                        <---------MYB111(2)                                                                    --------->MYB46(3)                                 --------->ANAC46                <---------WRKY12 --------->YAB1                 -------->P                      --------->WRKY18(1) -->ZmHOX2a(1)                  ------>MYB83                   <--------ZAP1 -GLK1(2)                       ------>MYB46(1)                <-----------HVH21 -----ANAC46                   ------>ZmHOX2a(1)             --------->MYB59 ---->TOE2(3)             <---------At4g35610           <---------YAB1  --------->AtMYB61   ttataagaatgtaggctatcttctctcccgctcctaccccaaattcaaaattcgaattttgattcggtcaaacaccaaccgttgtaattctctctctctc  8624700                                                                                                  <<<                                                                                               <<<<<<                                                                                            <<<<<<<<<TBF1                                                                                         <<<<<<<<<TBF1                                                                                      <<<<<<<<<TBF1                                                              --------->ANAC58     <<<<<<<<<TBF1<xxxx                                                              --------->ANAC58   <xxxxxxxxxxxxxxxxxxx                                                             <---------ZAT18    <<<<<<<<<TBF1<xxxxxxx                                                            <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxx                                                           <---------SPL7 <<<<<<<<<TBF1<xxxxxxxxxxxxx                                                         *TSS--------->ZAT18 <<<<<<<<<TBF1<xxxxxxxxxx                                                  <---------ALFIN1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------ATHB12                     --------->ANAC46--------->SPL7<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------------>CBF                 --------->DAG2     <----------DOF2<<<<<<<<<TBF1<xxxxxxxxxxxxxxxx <----------DOF2    ---------->DOF2 ---------->DOF2 --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tctcttttcaataaatctcacttaaatccctattttcaaaaagctaaacgatacactcctttgtacgctcttcttcttcttcttcttcttcttcttcttc  8624800                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                      ------>ZmHOX2a(2)                          <---                                                     <------ZmHOX2a(2)                           ----       <<<<<<<<<TBF1                                --------->ARR11(3)                           ----    <<<<<<<<<TBF1                                   <---------ARR11(3)                      ========= <<<<<<<<<TBF1                                      --------->AGP1                          ------>ZmHOX2a(1) <<<<<<TBF1                    <---------HSFB2a(2)  --------->ARR14(2)                      <-------- <<<TBF1  <<<<<<<<<TBF1        --------->HSFB2a(2)  <---------AGP1                          ========= xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <---------ARR14(2)                    ------>ZmHOX2a(2) xxxxsmallRNA(se3)     <---------ZAT14           <---------HSFB2a(2)                     <------ZmHOX2a(2) xxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC46   <---------HSFC1(1)                     --------->ARR11(3) xsmallRNA(se3)   ------>ZmHOX2a(1)              --------->HSFB2a(2)                    <---------ARR14(2) xxxxxxxxxxsmallRNA(se3) ------->TEIL  --------->TOE2(3)                                --------->ARR14(2) xxxxxxxxxxxxxsmallRNA(se3)<----------DOF2    <-----------GT1                           <---------ARR11(3) xxxxxxxsmallRNA(se3)  --------->ZAT14 --------->TOE1(3)          --------->YAB1 <----------DOF2<----   ttcttcttcttcttcttctcctctctgtactttcgcgaaaaccctaattttctagatctgtttctctataatcgcctctctcactttgtagatccttcag  8624900                                                                                  ---------->DOF2                                                                                <---------ANAC58                                                                                <---------ANAC58          --------->ARR14(2)              <---------MYB111(2)              <---------ATHB12 ---->ZmHOX2a(2)                          <---------MYB46(2)               <-----------RAV1(1) ----ZmHOX2a(2)                 --------->MYB46(3)                     <------NtERF2 ------AGP1                     <---------ATHB12                      ------>NtERF2 --------->HSFB2a(1) --------ARR10                 -------->P <---------MYB111(1)         >>>>>>>>>>>>>>>>>LFY ----->AGP1                    ------>MYB46(1)                        --------->LBD16 ------ARR14(2)                ------>MYB83                           <---------RAP2.6(3) ------ARR11(3)               ------>MYB83<---------MYB59            <---------ATERF1(2) ----->ARR14(2)               ------>MYB46(1)                        --------->RAP2.3(3) ----->ARR11(3)             --------->MYB46(3)                       --------->DEAR3(1) =====HOX2a_HOX2a           <---------MYB55(2)                       --------->RAP2.3(2) ---HVH21 <---------GLK1(2)--------->ANAC58                          --------->RAP2.6(2)  ------>NtERF2 ====HOX2a_HOX2a           --------->ANAC58 ------>MYB46(1)          --------->ATERF1(2)  --------->LBD16 -----CCA1(2)              --------->ANAC46 ------>MYB83            --------->RAP2.3(1) <---------LBD16   atctactctccagtttctctctcagaaacacccaaccatggctaccaaacttccccttcaaaacagcaatgccgccaatgttgcgaaagctccggctaaa  8625000                <------NtERF2               --------->LBD16               ------>NtERF2              <---------ANAC46             --------->ATERF1(1)             <---------LBD16             <------NtERF2            ------>NtERF2            <---------DEAR4(2)            <---------ERF1            <---------RAP2.3(1)            <---------ATERF1(1)           <---------DEAR3(1)           <---------ATERF1(2)           --------->DEAR3(1)           --------->ATERF1(2)          --------->ORA47(2)          <---------LBD16          --------->RAP2.3(1)          --------->ATERF1(1)          <------NtERF2          --------->RAP2.6(1)          --------->DEAR4(2)          --------->ERF1         <---------RAP2.3(1)         <---------ATERF1(1)         ------>NtERF2        --------->DEAR3(1)        <---------ATERF1(2)                                                                        --        --------->ATERF1(2)                                                                 <--------       --------->RAP2.3(1)                                                                  ---------       --------->ATERF1(1)                                                                  <--------       --------->ERF1                                                                       <--------      <---------ATERF1(1)                                                                  <---------ARR14(1)      ------>NtERF2                                  <---------At4g35610                   <---------CCA1(2)      --------->At4g35610                --------->At4g35610   <---------GLK1(2)     <-------TEIL  <-   <---------ZAT2                      --------->YAB1<---------ZAT2              <-------TEIL<------ZmHOX2a(2)   --------->ZAT2                    ------->TEIL    --------->At4g35610     ------>ZmHOX2a(1)------>ZmHOX2a(2)   --------->At4g35610        <------ZmHOX2a(1)      --------->ZAT2          ========================HOX2a_HOX2a   <---------At4g35610   <------ZmHOX2a(2)          <---------TOE1(2)        =======================HOX2a_HOX2a   tctcgagctgccgccggcgggaagacgatcgaggaaatgtatcagaagaaatcgcagcttgaacacattcttctccgtcctgatacatacatcggatcta  8625100                                                                                                -----                                                                                               <-----                                                                                             --------                                                                                      <----------DOF2                                                                                     ------>ZmHOX2a(2)                                                                                   <---------ARR11(3)                                                                     <---------LBD16<------ZmHOX2a(2)         --------->ANAC46                                <---------MYB52(1)        <---------ARR14(3)     <---------ALFIN1                                   <-----------HVH21          --------->ARR11(3) ------->HSFB2a(2)                                     ====================================HOX2a_HOX2a -AGP1   --------->ANAC58                              =====================================HOX2a_HOX2a >ARR14(2)                                             ------>ZmHOX2a(1)           --------->AGP1 ---ARR10--------->ANAC58       ---------->DOF2<---------WRKY12    ------->TEIL    --------->ARR14(3) -ARR14(2)                  <---------YAB1 ----------->GT1  <---------ANAC55(2)    <---------ARR14(2) --------HSFB2a(2)<----------DOF2          <---------MYB46(3)--------->TOE2(2)     --------->ARR14(2)   tcgagaaacacacccaaacactttgggtttatgagaaagatgagatggttcaacgtcctgttacctatgtacctggattgtataagatctttgatgagat  8625200          ------>NtERF2          --------->At4g35610         --------->DEAR3(1)                                               --------->ARR14(2)      --------->ANAC46                                                    --------->GLK1(2)    <---------DOF5.7(2)                                                   <---------ARR14(2)    ---------->DOF2                                        <---------WOX13(1)<---------YAB1   --------->ARR14(2)                                    --------->ATHB12<---------GLK1(2)          <   <---------ARR14(2)       --------->CCA1(2)           <---------YAB1   <---------ARR14(2)         - ---->GLK1(2)       --------->MYB52(1)       <---------ANAC46        --------->At4g35610            < ----GLK1(2)      --------->MYB46(3)         <---------ANAC58        <---------At4g35610        ----- --->ARR10<---------At4g35610                <---------ANAC58 <---------TOE2(3)     <---------ZAT6  -   tctcgtaaacgccgctgataacaaacagagagatgcgaagatggattccgttcaagttgtgattgatgttgagcagaatctgattagtgtttgtaacagt  8625300  Previous    Next  AGI:  At3g23890.1    Description:  TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing). Identical to DNA topoisomerase 2 (TOP2) [Arabidopsis Thaliana] (GB:P30182;GB:Q38807); similar to DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative [Arabidopsis thaliana] (TAIR:AT3G10270.1); similar to putative DNA topoisomerase II [Oryza sativa (japonica cultivar-group)] (GB:BAD07880.1); similar to DNA topoisomerase II [Nicotiana tabacum] (GB:AAN85207.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40810.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); Range:  from: 8624757    to: 8631334    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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