Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      ------>ZmHOX2a(2)                   --------->ARR14(1)                  <------MYB46(1)                   --------->CCA1(2)                   <------MYB83  <---------ICU4   <------ZmHOX2a(2)                 <--------P <---------YAB1   <---------ARR14(2)                <-------GAMYB ------->YAB1     <---------ARR11(3)               --------->ATHB12 ----->ANAC58     --------->ARR11(3)               <---------MYB46(3)     =========================== ----->ANAC58     --------->ARR14(2)    <---------REM1(1)      <-----------RAV1(2)    --------->TOE2(2) >GAMYB <---------TOE1(2)          <----------DOF2 --------->MYB55(2)     <----------DOF2<---------ANAC46 --ALFIN1         --------->AGP1--------->GLK1(2) <---------YAB1   <--------P  ---------->ID1    <---   ctcatcatcgctcgtttcaagatccgaactagacaatctttgttgaagcttgatggttggattccacaggtagagacttttgtcgtaatctacgtggaaa  8622800                      --------->ANAC58                      --------->ANAC46               ------->PIF5              --------->ANAC58              --------->TGA1a                                                      <---------ANAC46              ===========================================bZIP_DOF                <---------DOF5.7(2)              <---------TGA1a                                                   --------->WRKY38(1)              --------->ANAC58                                                  --------->WRKY12              --------->bZIP60(2)                                               ----------->HVH21         --------->ANAC46                                                      --------->DOF5.7(2)    ------>MYB46(1) --------->ANAC46                                           <---------MYB52(1)    ------>MYB83 --------->PCF2                           --------->YAB1      <-------GAMYB   --------->WOX13(1) --------->ANAC58           --------->At4g35610     --------->ETT(2)  --------->AtMYB61 <---------ALFIN1        ------>ZmHOX2a(1)            --------->WRKY38(1) =======================bZIP_DOF           --------->TOE2(3)             --------->WRKY12 ------MYB52(2)<-------PIF5    --------->YAB1 ---------->DOF2         <---------ANAC46   caaaccaatccatggcacgtccccacgacttgatagtaatctcttcctaaaagctcaccatcatgttctgagacgtagaccgttgacgcgttgtagagag  8622900                                                          <---------ANAC46                        ---                                                   <------ZmHOX2a(1)                            <----                                                --------->SPL7                                  <----                                               <---------MYB52(1)                               <----                      <---------SPL7          --------->LBD16           <---------ANAC58    ---------                    <---------------AtSPL8    <---------SPL7            <---------ANAC58  <------ZmHOX2a(2)             <---------ANAC58                <---------ANAC55(2)   --------->MYB111(1)   <---------ARR11(3)             <---------ANAC58          <---------YAB1 <---------HSFB2a(1)                --------->ARR11(3)   aatggatgcagcatgacttgagatggtaccgagacgttgttatgactccgtaaggactcttcgtggaagtagttgccttcgatgtctccaagatcaaagc  8623000                                          <---------At4g35610                                          --------->ZAT2                                          --------->At4g35610                                          <---------ZAT2                                         <---------ARR14(2)                                         --------->ARR14(2)                                        <------ZmHOX2a(1)                                      --------->LBD16                                     <-----------RAV1(2)                                     <---------LBD16                                     <---------HSFB2a(2)                                     --------->HSFB2a(2)                                  ------>ZmHOX2a(2)                                  =============HOX2a_HOX2a                                 ==============HOX2a_HOX2a                                 --------->GLK1(1)                                 <---------GLK1(1)                                 <------ZmHOX2a(2)                                --------->ARR11(3)                                  <---------ZAT6                                --------->ARR14(2)                           <---------ANAC46                                <---------ARR14(2)                          <---------LBD16                                --------->ARR14(3)                         --------->MYB52(1) ------>ALFIN1                  <---------ARR14(3)                       <---------DAG2       <------ -----ANAC58              <------ZmHOX2a(2)                     <-----------HVH21<--------P   <------ -----ANAC46              =====================HOX2a_HOX2a     <---------ANAC46 <---------MYB52(1) -----ANAC58   <---------GLK1(2)<---------ARR11(3)--------->ANAC58       <----------DOF2      ------- ->DOF2   --------->MYB52(1)---------->DOF2       --------->ANAC58   <---------ATHB12        <-------   gtgtttcagagcaaacagagtctctgagatcaaagatctccaggagctgcaaacgcatttgaatcgcgtcaatgactttacgggtagtcttaagagaatc  8623100                                                                                           <------ZmHOX2a(1)                                                                                           --------->YAB1                                                                                         <---------TOE1(3)     <--------HAHB4                                                         ------------>CBF     <---     <---------ICU4                                                         --------->MYB46(3)  -----    <---------ATHB12                               <-------TEIL           <---------ARR14(2)  ------- -----ARR10                                   <--------P              --------->At4g35610<---------TOE2(3) ---ARR14(2)                        --------->ARR11(3)               *TSS<------ZmHOX2a(1)----------- -->GLK1(2)         --------->ARR11(3)       <---------MYB52(1)    <---------ZAT14    <---------REM1(1) --GLK1(2)      <------ZmHOX2a(1)   <---------ARR11(3)             --------->ZAT14 <---------ZAT6----   tcttccatcatttcaagaggaagattatgaggtgagaacatctctctggtagtttcatccatgagccagagcagaggaaccaatagtgttgaaggataat  8623200                                                                                                   <-                                                                                                 ----                                                                                               ------                                                 <---------ARR14(2)                           <------                                         <------------CBF                                 --------->GLK1(1)                                       --------->LBD16                             --------->DAG2----                                     <---------LBD16                       <---------MYB46(3) <------ ------AHL20(2)           --------->MYB59<----------DOF2                <---------MYB46(3)--------->At4g35610 ---->AHL20(2)            <---------TOE2(3)   <---------ANAC46         --------->ALFIN1 <------ZmHOX2a(1) -->YAB1               <----------DOF2--------->ANAC46         --------->AtLEC2   ---------->DOF2<--- >GT1      <---------AHL20(2)        <-----------------AG    <---------ANAC58<---------ANAC46<-------TEIL ----->AHL20(2)  <---------ICU4    <-----------GT1           <---------ANAC58<---------HSFB2a(2) <---   aaataagaaatattaaaaatcatttctttaggtatattatccgcattggggtataccggtatagcatgcacaagtggttgtggaaaaagaggagatgcat  8623300                         <---------AHL20(2)                        <---------AHL20(1)                        --------->AHL20(1)                        --------->AHL20(2)                                                       <---                   --------->AHL20(2)                                                 <---------ANAC46    <------ZmHOX2a(1)  --------->YAB1                                           --------->ARR11(1)  >>>>>>>GRF7      <---------AHL20(2)            --------->YAB1                 --------->ARR11(3) <-----------RAV1(2)<---------AHL20(2)      <---------DAG2               <---------AHL20(2)      <--- ----------HVH21  <---------YAB1            <----------DOF2             --------->ARR11(3)    ------- --->MYC2       <---------ICU4         <---------ANAC55(2)         ----------->GT1  <---------LBD16 ->TEIL         -------->ATHB1         --------->ANAC55(2)     <---------ZAT14  <---------ARR14(2)--- ---ANAC58     --------->ICU4         --------------->AtSPL8   <---------ARR14(2)  --------->ALFIN1 --->MYC3      <---------ATHB51----------->GT1  <---------YAB1 --------->ZAT14 <<<<<<<<<RAP2.2<------ ---ANAC58     --------->AHL20(2)<---------ARR14(2)  --------->AHL20(2) <---------AHL20(1)   -------- ----MYC3      <---------AHL20(2)--------->ARR14(2)  <---------AHL20(2) <---------ARR11(3) --------->YAB1 ----MYC2----------->GT1<---------AHL20(2)------->TEIL         --------->ARR14(2)--------->CCA1(2)<--   gtgtcaggataatgtaaattattaaatataatgtggatattatgtactttatgatataaatacagtatacagtatatatttagatatgggggataataaa  8623400          <---------ARR11(3)          --------->ARR11(3)        --------->ICU4      ---------->DOF2                 --------->CCA1(2)    <---------RAP2.6(3)               --------->GLK1(1)   <---------ANAC55(2)                <---------GLK1(1)                                          <---   ----------->GT1                   <---------ARR14(2)                                    --------->ANAC55(2)   <---------ANAC46                  --------->ARR14(2)                                    <---------ANAC55(2)  <-----------------------TaNAC69(2) ---------->TaMYB80                                    <---------ANAC46 ------AHL20(2)                      --------->ARR11(3)                                    <---------ANAC58 ------ATHB51                        <---------ARR11(3)             <---------TOE1(3)      <---------ANAC58 -->AHL20(2)                        <------ZmHOX2a(1)               <---------TOE2(3) <---------ANAC58 ------->DOF2                     <---------TOE2(3)                <---------DOF5.7(2)--------->ANAC55(2) ---AHL20(2)                ------->TEIL                           ---------->DOF2    <---------ANAC58 ->AHL20(2)          --------->AHL20(2)             ----------->HVH21                <---------TOE2(3) -------ICU4         <---------AHL20(2)     ---------->DOF2      --------->DOF5.7(2)<-----------GT1   taatgccgtaaagatgttgacatttaaatgaaacttgaggatatgctaaagggtatgaccagaagacgttaaagtttgctacttatttacgtttcgtatt  8623500                                           --------->TOE2(3)                                ---------->DOF2                               --------->AtMYB61                              --------->ANAC58                         --------->YAB1   <---------ICU4                   --------->ANAC58       <--------HAHB4                   --------->ANAC46      --------->ICU4                   --------->ANAC58      <---------ATHB12          <---------ANAC58--------->ANAC58--------->YAB1   <---------ANAC58          <---------ANAC58--------->ANAC58--------->ATHB12 <---------ANAC58                         < ------AHL20(2)--------->YAB1 --------->ANAC58           ------->TEIL             <---------YAB1-----   aaaaattttggttcttgtcataagcaataagcaccaaagctccatcattaactacgatggaccgtggcagaaaatttccaaagtattataccaaaacaac  8623600                                                                             <-------GAMYB                                                                             <---------ANAC58                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               --------->MYB52(1)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                       <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)                                                       --------->At4g35610  <------MYB83                                                       <---------At4g35610  <---------MYB46(3)                                                     xxxxxxxxxxxxxxxx>smallRNA(s)<---------RAP2.6(2)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    <------NtERF2xxxxxxxxxxxxxxxx>smallRNA(i)                                                    --------->ATERF1(1)     <------MYB46(1)                                                   <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC58                                             <---------AtLEC2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ANAC46                                         <----------DOF2      xxxxxxxxxxxxxxxx>smallRNA(s)                                        <---------ANAC58  ------>NtERF2     xxxxxxxxxxxxxxxx>smallRNA(i)                                        <---------ANAC58 <---------ZAT18   --------->MYB59           <---------ARR11(3)           <---------ANAC46<xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->ARR11(3)      <---------ICU4  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->AHL20(1)     --------->ICU4   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ----------->GT1            <---------YAB1   <xxxxxxxxxxxxxxxxsmallRNA(s)  <---------ANAC58 ----------DOF2                 --------->YAB1   <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ANAC58      xx ---->MYB46(3)                 <---------ATHB12<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <-----------GT1   aactttgtagggatatattgaaactgaagacaaatcataatggctttgaatggaggcagcggacaaaacggtccaatttggttgcggtttaatccatttc  8623700  Previous    Next  AGI:  At3g23880.1    Description:  F-box family protein. Identical to F-box/Kelch-repeat protein At3g23880 [Arabidopsis Thaliana] (GB:Q9LIR8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G06240.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75235.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 8621993    to: 8623169    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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