Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 ----                                                                                               ------                                                                                              <------ZmHOX2a(2)                             --------->ZAT14                       --------->LBD16           --------                      <---------ARR14(2)       <---------ZAT2  ------>ZmHOX2a(2)             <-------                      --------->ARR14(2)       --------->ZAT2--------->ARR11(3)              -------- ------->DOF2         <---------GLK1(2)      =========================HOX2a_HOX2a            <------- --->DOF2   <----------DOF2  <---------At4g35610             <---------ARR11(3)              -------- -YAB1      <---------DAG2   <---------ZAT14 ------>ZmHOX2a(1)<---------GLK1(1)              <------- ----AGL15<---------At4g35610--------->At4g35610          <---------WOX13(1)                 <-------   gaaagaagttgcagcttttttgcagaaactctgcagaaaaccttctcctagctcagatagattgatctccccagtagtagcctcgaactcttcaagatcc  8573800                         --------->TOE2(3)                         --------->TOE1(3)                    <---------ANAC58          <-----------------AGL1          ----------------->AGL2          ----------------->AGL1          <-----------------AGL2 --------HVH21      <---------ANAC58 -->ZmHOX2a(1)--------->ARR11(3) >ZmHOX2a(2)  <---------ARR11(1) ->ARR14(3)   <---------ARR14(2)                                                              <------ --ARR14(2)   --------->ARR14(2)                                                              ------- ->ARR11(3)   <---------ARR11(3)                    --------->TOE2(3)                ----------->GT1 --ARR11(3)  <---------CCA1(2)          --------->SPL7                           --------->DAG2 ->ARR14(2)<---------------AGL15      <---------ZAT14                           ---------->DOF2     - --ARR14(3)--------------->AGL15      --------->ZAT14      ---------->DOF2   --------->AHL20(2)    -- --GLK1(2)----------------->AG        <---------SPL7--------->TOE1(3)     --------->ATHB12  ---------   ttcacatcaatgtccatatctggcatacctcaaaacacactgtacgaacaaaaaccctaaacaaagacagagaaattgattaaaaagctgtgaaaatcat  8573900                 --------->AtLEC2                --------->TOE2(2)                --------->TOE1(2)               <---------ICU4       ---------->DOF2   --------->ANAC46   --------->ANAC58   --------->ANAC58   <---------ARR14(2)    <----------DOF2 ---ICU4       --------->YAB1  --------->ANAC58               --------->YAB1 -->YAB1      <---------ATHB12 --------->ANAC58               <---------ICU4 --------->ARR14(2) -------->MYB46(3)    --------->ARR14(2)--------->MYB46(3)   <---------ATHB12<---------GLK1(2) ----->TEIL   --------->ICU4   --------->ANAC46             <---------ARR11(1)              --------- >ARR11(3)  --------->WOX13(1) --------->ANAC55(1)         <---------ARR14(1)<---------ARR14(2)   gaaccacgaaaatgcaatcatgcgaatacaaacacgaaatcaacaactttcccttagaaccgaatcattctccataacatattctccgatgcttaaaagc  8574000                               --------->ATHB12                            --------->TOE2(3)                                   --------->ZAT14                      <---------------AtSPL8                                    --------->ZAT18                --------------->AGL15                                          --------->ALFIN1                <---------------AGL15                                       <------ZmHOX2a(1)       -               --------->TOE1(3)<---------ANAC58                         <------NtERF2            <--               --------->TOE2(3)<---------ANAC58                       <---------ANAC46          ----               --------------->AGL15                                 <-----------HVH21          -----               <---------------AGL15                                ----------->HVH21          <-----               <-----------------AGL3     --------->ZAT2            --------->ALFIN1          <------               <---------MYB59<---------YAB1  <------NtERF2        --------->ATERF1(1)        ------>NtERF2              ----------------->AGL3      <---------At4g35610      <------NtERF2<---------ZAT14<-----              <-----------------AGL3<---------ANAC58              <---------DEAR3(2)         <-------              ----------------->AG  <---------ANAC58             <---------DEAR3(1)          --------              <---------ANAC55(2)<---------WOX13(1)             <---------ABI4(1)          <---------   ---------->DOF2    --------->MYB59  ---------->DOF2 <---------ANAC46--------->ETT(1)   --------->ANAC46 ->DOF2       ----------------->AGL2<---------ANAC46   ----------->GT1<------NtERF2     <---------DOF5.7(2)   agaatcaaagcgtattacctaaaataggtaccttgattgcttaaagctggcacgatggagtaaaacggcggtgtcggaggagtgcagagtaaacgtcgcc  8574100                                                                                                  ---                                                                                                 *TSS                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                ----- --------->DOF2                                                                                 ----- ----NtERF2                                                                                     ===== ----->LBD16                <---------ANAC46                                             --------->ARR11(3) ---->LBD16             <-------TEIL                                       ========================== -NtERF2               --------->CCA1(2)                                   ---------->DOF2      ===== ---ATERF1(1)         --------->ARR11(1)                  <---------MYB46(3)     <------------------- ----LBD16          ----------->ARR10            <---------DAG2           <---------WRKY12      <<<<< --DEAR3(1)     --------->LBD16                  <----------DOF2          <---------WRKY38(1)  <----- ->DEAR3(1)    <---------ANAC46               <---------ALFIN1      ------------------------>ANAC81 --HVH21      <---------LBD16                <---------ZAT18    <---------------------WRI1     ------   ggaaaatcgctgagaatgcggagagattcgacgtagaaaacccttggcacactttttcagtggttaagcgaagcagtcaaagagaagtgaagaaattgac  8574200 ------>TGA2(2) --------TGA1 --------HVH21 -----TGA1a ---->TGA1a ---->TGA2(1) -----O2 -----TGA2(1)            <---------AHL20(2) ---->O2                 --------->AHL20(2) ---->bZIP60(2)          <---------AHL20(1) -----bZIP60(1)         --------->AHL20(2) ---->bZIP60(1)         <---------AHL20(2)                                           ----------->GT1< ---->ANAC46           <---------YAB1                                              ---------->DOF2 <- ---->ANAC55(2)     <---------AHL20(2)                                       <---------AHL20(2)    <- ============================================bZIP_DOF                       <---------YAB1         -- =====bZIP_DOF      <---------YAB1  <----------DOF2                        <---------AHL20(2)      -- ============================================bZIP_DOF                    <---------YAB1            <- ----TaNAC69(2)    <---------AHL20(1)                        <---------TOE2(3)   <---------AHL20(2)-- <<<<<HY5          --------->YAB1 <----------DOF2      <---------YAB1 --------->AHL20(2)     -------- ------STF1        --------->AHL20(2)              <---------AHL20(2) <---------AHL20(2)    --------- ----->STF1   ------------>CBF <-----------GT1   <---------AHL20(2)   <---------AHL20(1)  ---------->DOF2   gtcactagtactagtagacaatattattaaattttgctctttggtatctatatttttatgtttaagttttattttatttttattttaaagtgaaaaggaa  8574300 ---------AHL20(2)                               --------------->AGL15 --------AHL20(2)                                <---------------AGL15 --------AHL20(1)                    <----------DOF2                                               <- ------->AHL20(2)              <-----------GT1  ----------------->AGL1                           <--- ------->AHL20(1)           ----------->GT1     <-----------------AGL1                           <--- --------ARR11(3)      <---------AHL20(2)       ----------------->AGL3                           <--- ------->ARR11(3)     --------->AHL20(2)        ----------------->AG                            <---- --->GT1        ----------->HVH21 <---------ARR11(3)                                            <---- -->GT1       --------->ANAC55(2) --------->ARR11(3)    ----------->GT1        <-----------GT1 <-----   atatatttagaagttcacatgacataaaatttgtaacatctttttttttttccaaaatttgtaacatctacattttggtttttacatctaattcgatttg  8574400    ----------->GT1    <------MYB46(1)    <------MYB83 --------MYB46(3)                                                             ---------->DOF2 ----GAMYB  <---------AHL20(1)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ------ANAC58              --------->TOE2(3)                    --------->ANAC55(1) ------ANAC58            <-----------GT1                        --------->ANAC46 --MYB83    --------->AHL20(1)                              ----------->RAV1(1)--------->DAG2 --MYB46(1) --------->AHL20(2)                   ----------->GT1--------->ANAC55(2)               <-- ----AtMYB61<---------AHL20(2)   <---------ICU4---------->DOF2  <---------ANAC55(2) ---------->CDC5--   gttgtttggtttaataaatttcatatataacttaattttgaccaaaacacaaagaaaaaaaacaacacataattcactaaaaaagctcagagcaatccca  8574500                             --------->ARR11(3)                             <---------ARR11(3)                             <---------AGP1                             <---------ARR14(2)   <---------AHL20(2)                             --------->ARR14(2)   --------->AHL20(2)                    <---------AHL20(2)       <---------AHL20(2)                     <------ZmHOX2a(1)             <---------AHL20(2)             --------->AHL20(2)               --------->DAG2             --------->AHL20(2)     <---------At4g35610                     ---------->DOF2             <---------AHL20(1)------>ZmHOX2a(2) --------->AHL20(2)      <---------TOE2(3)          --------->WOX13(1)<---------CCA1(2)--------->AHL20(2)   <---------------AGL15 -------ATHB12      --------->AHL20(2)     <---------AHL20(2)     --------------->AGL15       <------ --------->GT1<---------AHL20(2)   <---------TOE1(3)           <-----------GT1    --------->MYB59   atggtttaaaatcaattaatttttaattttggatcttaagcttattttaaattaaaatgttgtttttactaagttaagaaaagttaggaagaagtttaac  8574600                                                                                  ----------->RAV1(1)                                                                                 --------->ANAC46                                                                          --------->YAB1                                                                        --------->ANAC58                                                                        --------->ANAC46                                                                        --------->ANAC58                                                                       ------>MYB46(1)                                                                       ------>MYB83                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     --------->MYB46(3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <-------                          --------->YAB1     ------->GAMYBxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->ATHB12     --------->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             ----------->GT1                <---------MYB52(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <---------MYB46(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ANAC46 -----GT1   <---------ATHB12             <----------ID1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   caatttctacttcaatggttaagaacgattagaattttaagaaacaacaaactatttcaacacaatgtctacccactcaaaacacaacacatatgctttt  8574700  Previous    Next  AGI:  At3g23780.1    Description:  NRPD2a (NUCLEAR RNA POLYMERASE D 2A); DNA binding / DNA-directed RNA polymerase. similar to NRPD2b (nuclear RNA polymerase D 2b), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G18090.1); similar to RNA polymerase IV second largest subunit [Solanum lycopersicum] (GB:AAY68206.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44343.1); similar to RNA polymerase IV second largest subunit [Rhododendron macrophyllum] (GB:AAY68198.1); contains InterPro domain RNA polymerase, beta subunit, protrusion; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains I Range:  from: 8567738    to: 8574197    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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