Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ---------->DOF2                   ----------->GT1                                      --------->AHL20(2)          --------->ATHB51                                              <---------AHL20(2)       <---          -------->ATHB1                                               --------->AHL20(2)       -----          --------->ATHB12    <------MYB83<----------DOF2          <---------ARR11(3)          <-----         <---------YAB1       <------MYB46(1)  <---------AtLEC2    --------->ARR11(3) ---------->DOF2   agttcgagtctattattgagatggaaataagtgggttttagtaacttttgcaagtagacatcaaaacaagattttaaattacaaaagctaaagaaataag  8456300                                                                  --------->ZAT2                                                                  <---------ZAT2                                                            --------->DEAR3(1)                                                            ------->PIF5                                                            <-------PIF5                --------->ANAC58                                   <------NtERF2           --------->DEAR3(2)           --------->ANAC58                                  ------>NtERF2            <------NtERF2         <---------ZAT2                                  <---------ATERF1(1)      --------->ATERF1(1)   --------->TGA1a    <---------------AtSPL8    <---------DEAR3(1)           --------->DEAR4(2)    --------->ZAT2  <---------ICU4           <---------ARR14(2)             <---------ATERF1(1)-------->ZAP1  --------->MYB52(1)       --------->ARR14(2)             ------>NtERF2    >>>>>>>>>>WRKY11  --------->YAB1           ----------->HVH21             <---------PCF2    >>>>>>>>>>WRKY6 <---------ATHB51        --------->LBD16                <------NtERF2     --------->WRKY45 --------->ICU4        <---------LBD16                  <---------ABI4(2) --------->WRKY12 ---ZmHOX2a(1)       <---------ARR14(2)                 --------->ATERF1(1)<---------WRKY18(1) ------>GT1          --------->ARR14(2)                <---------ATERF1(1)--------->WRKY38(1) ------- ----TOE2(3)  --------->RAP2.6(3)--------->ALFIN1     --------->ALFIN1    ----------->HVH21   <------   gaaataatggtaccatgaaggcaaaaccggagacggtggcccaagaattggcaagggtggcaccggcgagctcgagttgaccgaggtgagaagcaaacat  8456400                                                                                   --------->bZIP60(2)                                                                                   <---------TGA1a                                                                                   ==================                                                                                   ==================                                                                                   --------->O2                                                                                   <---------O2                                                                                   --------->TGA1a                                                                          <---------ANAC58   <-------                                                                          <---------ANAC58   <-------                                                     ----------->GT1 <----------DOF2     <------ZmHOX2a(2)                                          --------->ATHB12  --------->ATHB12       --------->ANAC46                                         <---------YAB1    <---------ATHB12      <---------ALFIN1 -->YAB1                   <<<<<<<<<<<<<<<<<LFY  ============================================bZIP_DOF ---ICU4   <------ZmHOX2a(1) --------->ATHB12    ---------->DOF2     ========================bZIP_DOF   cacagaagttataggaatacagtagtagaaaacattggtgagtatcattggcaaagagtaaatcatttgagcttttgcttcttccacgtcgatcactttt  8456500                             ------>ZmHOX2a(1)                         ------>ZmHOX2a(1)                     ------>ZmHOX2a(2)                                                 >>>>>>>>>>>>>>                     ===============HOX2a_HOX2a                                        <<<<<<<<<<<<<<               =================HOX2a_HOX2a          <-----------HVH21              <------ZmHOX2a(2)   ---------->DOF2  <---------GLK1(1)           ------>MYB46(1)                     ================= --------->MYB46(3)<---------ARR11(3)           -------->P--------->MYB46(3)       --------->ARR14(2) ===bZIP_DOF   =====================HOX2a_HOX2a ------>MYB83                       <-----------HVH21< ===bZIP_DOF   ------>ZmHOX2a(2)              --------->AtMYB61--------->MYB52(1)  <---------ARR14(2) --DAG2      --------->ARR11(3)            <---------ALFIN1   --------->MYB46(3) --------->LBD16    < ---DOF2     <---------ARR11(3)<----------DOF2<---------MYB111(2) ------->GAMYB<---------LBD16 <-----   tgaaccaaagttgatgatcttgatctccttcctctttcatcttctccacctacatggtcatccaacaacggagaactcgttgccggatcagccattggat  8456600                                                                                   --------->ANAC58                                                                                   --------->ANAC58                      ----------->GT1                                              --------->ANAC46                      <------MYB46(1)                                           <---------SPL7 ------ >>>LFY               <------MYB83                                             <---------REM1(1)   -- <<<LFY   <------ZmHOX2a(1)                                          <---------AHL20(2)        <----- ================HOX2a_HOX2a                   <---------YAB1       <---------AHL20(2)         <----- ---------ANAC58     --------->MYB59         ----------->GT1        --------->AHL20(2)  *TSS   ------ ---------ANAC58     <---------AtMYB61 <------ZmHOX2a(1)        <------ZmHOX2a(1) ------->TEIL<------ZmHOX2a(1) ----GLK1(2) <----------DOF2          ----------->GT1       --------->ALFIN1  <---------------AtSPL8<   tttcttgttgaaggactttgggtttggttaagacttgaagaggagaattgtgatttggcaaggtgaggaattaaataagagatgtacgcagaaacaggat  8456700                                                      <---------AHL20(2)        ------>MYB46(1)                               --------->AHL20(2)        ------>MYB83                            ------------>CBF       ----------->RAV1(1)                  <---------YAB1      --------->AtMYB61                    --------->AHL20(1)                              --------->AHL20(2) --->ARR14(2)                              <---------AHL20(2)                   ---------->DOF2<----- ------->AHL20(2)                          --------->AHL20(2)          -------->HAHB4      <---------AHL20(2) ----ARR14(2)                              <---------AHL20(1)      <---------AHL20(2)      <---------AHL20(1) ----ARR11(3)                        ----------->RAV1(1)           --------->AHL20(2)      --------->AHL20(1) --->ARR11(3)                   <---------At5g28300   ----------->TBP --------->ICU4  ------------>CBF ---------AHL20(2)       ------>NtERF2    --------->YAB1   <-------TEIL<---------ICU4 <-------TEIL   attaaataccaacacaagaggcctctctgccatttactgccacattataatgcaatataaatacattttttaattatgccaaaaaagattcaatttatta  8456800                                                                         <---------AHL20(1)                                                                         --------->AHL20(1)                                                                         --------->AHL20(2)                                                                         <---------AHL20(2)                                                                        --------->AHL20(2)              <---------YAB1        --------->YAB1                      <---------AHL20(2)            <---------AHL20(2)      --------->TOE1(3)                --------->WOX13(1)             -            --------->ATHB51        --------->TOE2(3)              --------->MYB46(3)               <            --------->AHL20(2)   --------->YAB1                   --------->ANAC58                  <            <---------ICU4      <---------ATHB12            --------->DAG2                          -  ===========================HOX2a_HOX2a                   ---------->DOF2                          <  ------>ZmHOX2a(1)    --------->YAB1            --------->YAB1   --------->ANAC58         --------->YAB1 --------->TOE2(3)    <------ZmHOX2a(2)          <---------ICU4  --------->WOX13(1)       <---------YAB1 ------GT1 --------->ICU4  --------->GLK1(2)    --------->ICU4  <---------WRKY12  --------------->AtSPL8   catcctcagactaattatttttggatcagaatcaataatcttaaaacaaaatgatgacttaaaaagtcaaccaattaaatttgcaatgtactataatcag  8456900                                <-----------RAV1(2)                             --------->bZIP60(2)                  ------>MYB46(1)                  ------>MYB83--------->AtMYB61                           <---------YAB1          --------->YAB1   <---------ALFIN1                         <---------YAB1 -------->ZAT2  --------->AtMYB61           <<<<<<<<<<<<<<<<<LFY   --------->AHL20(2) ---------At4g35610       ----------------->AGL1                --------->TOE1(3) ---------ZAT2  <---------ALFIN1<---------LBD16--------->TOE1(2)--------->TOE2(3) -------->At4g35610       <-----------------AGL1               ----------->GT1                    <-- ------NtERF2  --------->MYB46(3)  <------ZmHOX2a(1)  <---------MYB59   ----------->GT1      --------   gcagctcatgagtcatgaccacccgattaccacctcaggaaactttgaacattggacttaacttatcgttaaaattgtgaataacaaaacttcatcaatt  8457000                                         <-------TEIL                                   --------->ANAC46      --------->AHL20(2)                                   --------->ANAC58<------MYB46(1)                          <---------At4g35610      <------MYB83                --------->YAB1      <-----------GT1     ----------->RAV1(2)  <------ZmHOX2a(1) ---------->DOF2 -------TOE2(3)         <-----------GT1 --------->AtLEC2 <---------AHL20(2)  <---------TOE2(3) ->WOX13(1)   <-----------GT1      --------->ANAC58----------->GT1 ----------->GT1   aagaaatatttctatattacaacaattcacctgtttcaagacatgcataggattggtattaaaatacaaaagtaaaactaatgaaaatttgtatttgagt  8457100                                                                 <-----------HVH21                                                                 <-----------TGA1                                                                <---------bZIP60(1)                                                                --------->bZIP60(1)                                                               <-----------STF1                                                             <---------O2                                                             --------->O2                <------ZmHOX2a(1)                                                        ---------->DOF2          <---------ARR11(1)                        --------->MYB52(2)           ----------->GT1            ------>MYB46(1)                     --------->TOE2(3)               <---------ANAC46           ------>MYB83<--------                   <---------YAB1                    --------->YAB1           <---------MYB59  <-----          <-----------GT1     --------->ZAT14      <---------ARR14(2)      <-----------GT1  ---------   ttttttttttttttacaagttttcattagttgtatagtcacatttagagagagtatcgtaaagacgtcgtcacctagttaccaaatctataggagaactt  8457200  Previous    Next  AGI:  At3g23560.1    Description:  ALF5 (ABERRANT LATERAL ROOT FORMATION 5); antiporter/ transporter. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT3G23550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39304.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) Range:  from: 8454123    to: 8456688    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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