Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <------MYB46(1)                                                                                    <------MYB83                                                                                   --------->MYB59                                                                                   <---------------AtSPL3                                                                                   <---------------AtSPL8                         <---------At4g35610                                    --------->ARR14(2)             <---------ARR11(3)                                                 <---------ARR14(2)             --------->ARR11(3)                                           <---------ANAC46           <---------TOE2(2)         <------ZmHOX2a(1)                    <-----------RAV1(1)           <---------TOE1(2)       <---------ANAC46                   <---------GLK1(2)        <---------ANAC46 --------->At4g35610                          <---------ARR11(3)   ---------->DOF2       --------->ZAT2                               --------->ARR11(3)   <---------DOF5.7(2)   <---------ZAT2    --------->ICU4             --------->ARR14(3)          --- --------ZAT6<---------GLK1(2)  --------->ALFIN1   --------->YAB1     <---------ARR14(3)          <--   agagttaaagtcgtagattttgaactcagcagaagtggaggagacataatcaaacatcataccaaaactcaagattttgtgggatttggtactgctattg  8386900                                                                  <---------ZAT18                                                                  --------->ZAT18                                                          --------->LBD16              <---------KAN4(2)                         <---------LBD16              --------->ARR14(2)                       --------->MYB52(1)              ---------->TaMYB80                      <---------ALFIN1             --------->ANAC46              <---------ARR14(2)                     --------->MYB46(3)     ----------->GT1       <--        --------->TOE1(2)         =========================HOX2a_HOX2a    --------->ANAC55(2) -------  --------->LBD16                 <------ZmHOX2a(1) <------ZmHOX2a(2)    <---------LBD16      <------ ------>ARR14(2)     <---------At4g35610           <---------ARR14(2)  --------->ZAT14    --------->ANAC58 -------ARR14(2)    ------->TEIL<---------TOE2(3)  --------->ARR14(2)  <---------ZAT14    --------->ANAC58   tatccgagagcatacgaatatgcatctaatctctgaggattatttgtagtctcgatccaccgggtttgtccactatacgggttacaaaccacaagcctag  8387000                                                   --------->ANAC58                                                   ----------->GT1                                                   --------->ANAC58                                                  ------->TEIL                                                <---------SPL7                                               <---------ANAC46                                            ----------->HVH21                                           <-----------HVH21                                          <---------ANAC58                                          <---------ANAC55(2)                                          <---------TGA1a                                          --------->TGA1a                                          --------->ANAC55(2)                 ---------->DOF2                                          <---------ANAC58                <------NtERF2                                          ===============================================bZIP_DOF <--                                          <---------O2                  <---------DEAR3(1)        <--                                     ===============bZIP_DOF            <---------ANAC46       ------       --------->YAB1                ---------->DOF2                   --------->ALFIN1        ------    <----------DOF2               --------->At5g28300                 <-----------HVH21        ------    ================================================bZIP_DOF    ----------->HVH21            <------- -----GAMYB                      <xxxxxxxxxxxxxxxxsmallRNA(i) <---------At4g35610           <-------TEIL -->STY1(1)                 <-----------HVH21--------->MYB52(1)------>ZmHOX2a(2)           --------->DOF5.7(2) ---STY1(1)             <-----------GT1   --------->O2        --------->At4g35610      <---------DOF5.7(2)   ggttgtctttcatgatgcataacaataaaccgtcgcagtgaaagacgtgacggacgtaaatttgatctgaagcgtcggggaaaagaagttcacgttcacg  8387100                                                                        --------->TOE2(3)                                                               <---------ICU4                                                               --------->YAB1    --------->ANAC46                                          --------->ICU4 -------DAG2                                                  <---------YAB1                       <- --------DOF2                                               --------->YAB1                    ------- --->ANAC58                       --------->ANAC46          <---------ICU4                    <------ --->ANAC58                <---------ARR11(3)            --------->WOX13(1)        <----------DOF2 <- --->ANAC46                --------->ARR11(3)   --------->TOE2(3)       <---------DAG2        <------ --DOF5.7(2) <---------TOE2(3)   <---------LBD16--------->TOE1(3)    <---------ALFIN1   <----------DOF2   ctttatacacaattcaacgttgttctgaagatttatgcgcatcaaataaaccctaaaatccatcatcatgaccaccttatactctcttttctttgcagct  8387200                                                                      --------->AHL20(2)           --------->ANAC58                                         --------->ANAC58     <---------WOX13(1)                                     <---------DAG2    <---------AtLEC2                                     --------------->AGL15    <---------ANAC58                                --------->ALFIN1----------->GT1    <---------ANAC58                             --------->DAG2     --------->ANAC58 --------DAG2           <----------DOF2--------->REM1(1) <---------ALFIN1 -->At4g35610        <----------DOF2 ====================================MADS_MADS ---At4g35610      <-------TEIL      ------>ZmHOX2a(1)  <-----------------AGL1                   ---- ---------DOF2    --------->ALFIN1   <---------------AGL15  <----------DOF2                      <--- ---ZAT2   --------->ANAC58  ---------->DOF2    ---------->DOF2   <---------AtLEC2           <-------   acttttgcttgacaaacaaggtgcttctttgcaaagctcctacatctagataaagtgttccactttttgcaagtaaatcggagtcttcttagagatgtca  8387300                                          ------>ZmHOX2a(2)                       ------>NtERF2     <------ZmHOX2a(2)                       --------->LBD16   --------->CCA1(2)                      --------->ANAC58   --------->ARR14(1)                      --------->ANAC46  <---------ARR11(3)                      --------->DEAR3(1)--------->ARR14(2)                      --------->ANAC58  --------->ARR11(1)                     <---------LBD16    <---------ARR14(2)                    <---------ATERF1(1) --------->ARR11(3)                    ------>ZmHOX2a(1)  --------->HSFB2a(1)                    =============================HOX2a_HOX2a              ------->TEIL             <---------HSFC1(2)           --------->ANAC58     <---------ANAC58                                                   <-         ---------->DOF2        <---------ANAC46                                                   <- <---------ARR14(2) ============================HOX2a_HOX2a                         --------->ANAC58 --------->ARR14(2)<---------ALFIN1    <---------HSFB2a(1)          <---------ARR11(3)            --- ----->At4g35610--------->DEAR3(1)    ----------->ARR10             --------->ARR11(3)            --- ------At4g35610<---------ALFIN1--------------------->WRI1   <------------CBF       --------->ANAC58 ----HVH21 --------->ANAC58     <---------ANAC58            --------->ATHB12       ------->GAMYB<----   tcggaaccctagaaagcacctcctccgccatattccttggaagatccgataaatctcttggaagattggacatcttcgtattcaacgagcaaactatagt  8387400             <----------ID1      --------->TOE1(3)      --------->TOE2(3)      --------------->AGL15      <---------------AGL15                                                                  --------     ----------------->AGL2                                                              <---------ARR14(2)     ----------------->AGL3                                                              --------->ARR11(3)    <---------TOE1(3)                                                                    --------->ARR14(2) -----MYB83---------->DOF2                                                               <---------GLK1(2) -----MYB46(1)                                                                           --------->ARR11(1) ------>MYB59----------->GT1        <---------ANAC46                                     <---------ARR11(3) ------>MYB46(2)            <----------DOF2            <----------DOF2               ---------->DOF2 -----MYB52(1)         <----------DOF2        <-----------GT1                   ----------->GT1  ----   taggttaaccttaaaaagaaaaacactttccttttcttctgtgaagttttacattttctttcgcctctgtaaaatgatatataagtaaaaagatactgaa  8387500   ----------->GT1                                                     --------->ANAC58            --   <---------ANAC55(2)  ----------->GT1        ---------->DOF2         --------->ANAC58           --- --->GT1   --------->ARR11(3)     <----------DOF2        --------->ATHB12     --------->YAB1      <-- ----->AHL20(2)    <------ZmHOX2a(1)       ---------->DOF2<------------CBF   <---------ATHB12--------   aaaataagtaaaataacttgaggagatagtgacattctttattagaaaagaaagaagacttattgaacatagaacgcaaatcaaaatttacataaaccaa  8387600                                                                                 <---------YAB1                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)           <------------CBF                                                --------->ICU4           -        --------->AHL20(2)                                                 <---------YAB1           -        <---------AHL20(2)                                               --------->ATHB51--------->YAB1       --------->AHL20(2)                                                <---------ICU4  <------ZmHOX2a(1) ------->CCA1(2)                       ----------->GT1                  --------->ICU4 <---------TOE2(3) ------>AHL20(1)                <----------DOF2   <---------REM1(1)     <---------ATHB12----------->GT1 -------ARR11(3)     ---------->ID1    <---------ANAC46 --------->GLK1(2)<--------HAHB4<---------TOE1(3) ---->CBF<---------YAB1     <---------ZAT18 <-----------GT1  <---------MYB52(1) <---------AHL20(1)<--   tatatgaaattaaaattgtcttcttcgttttgcactttggagcgtttaacagttgtagaatccattagtctcccataattaatatgtttaaggataaatg  8387700              --------->HSFB2a(1)              <---------HSFC1(2)              --------->HSFC1(2)              <---------HSFB2a(1)           --------->LBD16          --------->HSFB2a(2)         <---------LBD16         <---------ANAC46        <---------LBD16 --------->ANAC58                                        --------->GLK1(2)                          - --------->ANAC58                                        <---------ARR14(2)                        -- -------->MYB59                                          --------->ARR14(2)                        -- -------->MYB46(2)                                 --------->AtLEC2     ============================= -------MYB52(1)                             --------->REM1(1)          ------>ZmHOX2a(1)        <---   gttaggcaatttcgggagtttcccaaaggtttttctccgatatgactacatcgatgcaaaatccgaaatgcttcctctaaatacttgaaacttggttcga  8387800  Previous    Next  AGI:  At3g23420.1    Description:  F-box family protein-related. Identical to Putative F-box protein At3g23420 [Arabidopsis Thaliana] (GB:Q9LW55); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G24580.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 8386280    to: 8387331    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g23430.1    Description:  PHO1 (PHOSPHATE 1). Identical to Putative phosphate transporter 1 (PHO1) [Arabidopsis Thaliana] (GB:Q8S403;GB:Q9LW54); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G68740.1); similar to putative PHO1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44936.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42054.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71440.1); contains InterPro domain SPX, N-terminal (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) Range:  from: 8387515    to: 8393303    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version