Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->ANAC58    <---------MYB46(3)               --------->ANAC58   <--------P                        --------->ANAC46  <-------GAMYB                   <---------ZAT14 --->YAB1                  --------->ARR14(2)        <----------DOF2                                < ---ATHB12      <---------MYB52(1)--------->ZAT14<---------ATHB12        <----------DOF2     <-------   tgagggttgtttcaaactgttatcttctggttcttctacactcaagagtcaatgactttgcatttttgctaatagcttttactaactccaaacttctttg  8346800                                        --------->HSFB2a(2)                                        <---------HSFB2a(2)                                      ------>ZmHOX2a(1)            <---------ANAC58                               ------>NtERF2                       <---------ANAC46                             <---------RAP2.6(2)                   <---------ANAC58                             <---------ANAC58                  <---------ANAC58                             <---------ANAC58                  <---------ANAC58 ---------AHL20(2)       <---------ANAC58  ---------->DOF2   <---------ARR11(3)  --------->AHL20(2) ---DOF2                 <---------ANAC58--------->LBD16     --------->ARR11(3)  <---------AHL20(2)   attttttttttgcagaaaatgctcttaccttgcggccttcctccagaaagagaagacgagtaagagcttgtgtgcatttgaaattaaaaaaaacattcta  8346900               --------->ZAT18               ------------>CBF               <---------ZAT18                <---------WOX13(1)            <---------ANAC58          --------->AtMYB61                                            --            <---------ANAC58         ------------>CBF---------->DOF2                             <---            <---------ANAC46         --------->MYB46(3)--------->DAG2                          <-----        <---------ANAC58           <---------ALFIN1<---------RAP2.6(3)                  <---------MYB46(3)        <---------ANAC58<----------DOF2      <------------CBF                         <-------GAMYB<-       <---------HSFC1(2)      --------->At4g35610--------->LBD16                     <---------At4g35610       --------->HSFC1(2)  <-----------GT1 <---------AHL20(2)                   ---------->DOF2------   cttcttagaagcttgtgtgcaatcttctttaactgctccaccaatgtaattgccgaaaaggcttcttcttgtttctagttcataatgcagttgttgatca  8347000 ------>ZmHOX2a(2)                                                             ---------->DOF2 ------->ARR11(3)                                                        <------------CBF        ---- ------YAB1                                                    --------->HSFB2a(2)               ---- ----ICU4                                      ---------->DOF2 <---------HSFB2a(2)  <------------CBF --------ARR11(3)  <---------YAB1  <------------CBF      <-----------GT1--------->ATHB51         ---- --->YAB1      <----------DOF2  ------------>CBF     <----------DOF2--------->MYB46(3)   <-----------   tgatctaaacatttgtactttgttatagtcttgatacaattgtcaaactcaaagtctttttgctactcgaacaactattgcaaaagaattgaattgaaca  8347100                                                 --------->AHL20(2) ----->ANAC58                              ----------->GT1 ----->ANAC58     ---------->DOF2       ----------->TGA1      <----------DOF2----------->GT1       -- ----->ANAC46----------->GT1    --------->AHL20(2)           --------->TOE2(3)                 <----- -CBF   ---------->DOF2         <---------AHL20(2)--------->YAB1  <---------YAB1  ------->TEIL<------ZmHOX2a(1)   agtcataaaaaaaagaggttaaaagttggagtatttaaatgaatgacgaaaataaaaatcaaacctttatgtttgctaatggtgaatctctgagaaggag  8347200                                                                                      --------->ANAC58                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                                                <---------At4g35610                                                                                --------->ZAT2                                                                                --------->At4g35610                                                                             <---------At4g35610  ---                          --------->YAB1<---------TOE2(3)              --------->ANAC58          <--- -------->DOF2 ---------->DOF2    <---------YAB1                       --------->ANAC58          ---- -----ID1<-------TEIL    <---------ATHB12  --------->GLK1(2)    <---------CCA1(2) <-----------HVH21   acaaagatgagttcatcaaaagccctaatcaaaaccctgattaagaatccaactcgaatcaaatccaaatctcaagcgaagcagcttcacgcacaattca  8347300                                                                                <---------ANAC58                                                                            <----------DOF2                                                                          <---------HSFC1(2)                                                                      --------->ANAC58                                                                      --------->ANAC46        <---------ATHB12                --------->TOE2(3)             --------->ANAC58      --------->WOX13(1)          --------->YAB1               <----------DOF2  <---------ANAC58 ------>YAB1                     <---------ATHB12       --------->TOE2(3) --------->HSFC1(2) ------At4g35610          --------->At4g35610           --------->TOE1(3)------->TEIL           <---- ----->At4g35610          <---------At4g35610    --------->ANAC46   <---------AtLEC2<----------DOF2   tcagaactcaatcactctctcatacatcagcttcaatcgtaatctcaatctacacaaaccttaaacttttgcacgaagctttgcttcttttcaaaaccct  8347400                                               -------->P                                               ------>MYB83                                               ------>MYB46(1)                                              --------->ORA47(1)                       <---------GLK1(1)                                             --------->MYB46(3)                  --------->MYB52(2)                                             --------->DEAR4(1)                <---------MYB52(1)  <-                                             --------->DEAR3(1)             <-------TEIL        <----                                             ----------->HVH21           --------->At4g35610    -----                                             <---------MYB55(2)          <---------At4g35610  <------                                             <---------MYB46(2)         --------->MYB52(2)    <------                 <---------AtLEC2            --------->DREB2C(2)      <---------MYB52(1)   <---------ANAC58         ------>ZmHOX2a(1)                  --------->DEAR3(2)        --------->DOF5.7(2)  <---------ANAC58       ----------->RAV1(2)          <---------GLK1(2)               <---------ANAC58  --------->ARR14(2)      ------>ZmHOX2a(1)            <---------At4g35610              <---------ANAC58  <---------ARR14(2) -----MYB52(1)>>>>>>>ZML2          --------->At4g35610           --------->ANAC46<---------MYB46(3)--   taagtctcctcctgttctagcatggaagtcagtaatcagatgcttcaccgaccagtctctattctccaaggcgttagcttcgtttgtggaaatgcgagct  8347500    --------->At4g35610    <---------At4g35610    <----------TaMYB80                                    <---------WOX13(1)    --------->GLK1(1)                                  --------->ICU4    <---------GLK1(1)                                  <---------YAB1 --------HSFB2a(2)                                   --------->YAB1 ------DOF2                                         --------->ICU4 ---->GLK1(2)                                    <---------TOE1(1)      <------MYB46(1) ---At4g35610 <------ZmHOX2a(2)                  <---------TOE2(1)      <------MYB83 ---ZAT2     <---------ARR11(3)                 --------->SPL7       --------->CCA1(2) ------->HSFB2a(2)       <-----------GT1    <---------------AtSPL8<---------TOE2(3)            <-----   tctgggagatgcccagatcacaatgtgtttccttctgttttgaaatcgtgtacgatgatgatggatttgagatttggtgagtctgttcatgggtttattg  8347600                                                                                         <------MYB46(1)                <---------YAB1                                                           <------MYB83     <------MYB83                                                                       --------->MYB59     <------MYB46(1)    --------->ZAT14      ------->TEIL                              <--------P  <---------ANAC58      <---------ZAT14   <---------YAB1  --------->HSFC1(2)         <---------ZAT6  <---------ANAC58 <---------ANAC46<---------ZAT18        <---------HSFC1(2)         <---------REM1(1) ----ZAT6     ----------->GT1   ---------->DOF2    ------->TEIL               <---------TOE2(3)   ttaggcttggtatggattgtgatttgtatactggtaatgcgcttatgaatatgtatgctaagcttcttggtatgggttctaagattagtgtaggtaatgt  8347700  Previous    Next  AGI:  At3g23325.1    Description:  splicing factor, putative. Identical to Uncharacterized protein At3g23325 [Arabidopsis Thaliana] (GB:Q9LW64); similar to pre-mRNA splicing factor 10 kDa subunit, putative [Arabidopsis thaliana] (TAIR:AT4G14342.1); similar to unknown [Populus trichocarpa] (GB:ABK93878.1); contains InterPro domain Splicing factor 3B, subunit 5 (InterPro:IPR017089); contains InterPro domain Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846) Range:  from: 8345778    to: 8347069    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g23330.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G12770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45388.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70248.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8347207    to: 8349354    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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