Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------ICU4                   --------->YAB1                  <---------YAB1       --------->CCA1(2)                <---------ICU4        <---------ARR14(2)                --------->YAB1        --------->ARR14(2)       --------->YAB1               <---------YAB1       ----------->ARR10          ------>ZmHOX2a(2)         ==========================HOX2a_HOX2a               --------->ARR11(3)         ------>ZmHOX2a(2) --->ANAC58  <---------ICU4        <---------------------WRI1<---------ARR11(3)         <-------TEIL --->ANAC46  --------->YAB1     --------->ALFIN1         --------->YAB1                <------ZmHOX2a(2) --->ANAC58 <---------YAB1     <------ZmHOX2a(1)      <------NtERF2                   --------->ARR14(2) >GAMYB  =============================HOX2a_HOX2a   <---------ANAC58                  <---------ARR14(2) >ZAT14  <------ZmHOX2a(2)   --------->ALFIN1       <---------DEAR3(1)   --------->At4g35610 ->RAV1(1)--------->YAB1    <------ZmHOX2a(1)       <---------ANAC58     <---------At4g35610   caatactttggatcatcatcatcatcaagaggaggagggagatttgctcaaggggcgtctcatgatcttaatttgagcttagggctcggatccatgaatg  8251000                      ----------->RAV1(1)                    --------->DEAR3(1)                    --------->ZAT18                   --------->ATERF1(1)                                                         <-----                  <---------ATERF1(1)                                                          <-----                  ------>NtERF2                                                       <---------WRKY12                  --------->PCF2                                                      <---------WRKY38(1)               --------->LBD16               --------->TOE1(3)         ------>ZmHOX2a(2)       ------             =====================RAV        --------->TOE2(3)       --------->ARR11(3)       <------             <---------LBD16       <---------MYB46(3)                <---------ARR11(3)   <----------             ----------->RAV1(2)   <---------HSFC1(2)            ------>ZmHOX2a(2)   --------->WRKY18(1)            --------->MYB52(1)     --------->HSFC1(2)          <---------ARR11(3)   <-----------HVH21         --------->ANAC58          --------->HSFB2a(1)         --------->ARR11(3)  <---------MYB46(3)         --------->ANAC58          <---------HSFB2a(1)     ------>ZmHOX2a(2)      <---------DEAR3(1)<    <---------bZIP60(1)         --------->LBD16          <---------ARR11(3)      <------NtERF2-------    --------->bZIP60(1)      --------->MYB52(1)          --------->ARR11(3)    <---------DEAR3(1)   <   aagatgatgacactcaccggagcccaccagagaccggaggttctcaacctcaagatggtgatcttgatcttgatcttcgactcggcggtcatcgtcatca  8251100                                <---------ANAC55(2)                                --------->ANAC55(2)                                --------->ANAC46  <---------ANAC58              --------->ANAC58  <---------ANAC58              --------->O2                     ----------->GT1 ---HAHB4                       --------->ANAC58     <---------AHL20(2) ----ICU4            <---------TGA1a                 --------->AHL20(2)             <---------AtLEC2 --->ATHB12 --------->ARR14(2)  --------->bZIP60(2)<---------AHL20(2)         --------->ZAT14 ---YAB1    <---------ARR14(2)  --------->ANAC55(1)--------->AHL20(2)         <---------ZAT14 -TGA1    <---------MYB46(3)<------ZmHOX2a(2)    --------->AHL20(2)      <---------At5g28300 ---------TOE2(3)    --------->TGA1a            --------->AHL20(1)      <-----------GT1 -->ICU4<---------At4g35610--------->ARR14(2)   <---------AHL20(1)     --------->MYB46(3)   <-------- ---------YAB1     <---------ALFIN1             <---------ARR11(3)   --------->WOX13(1)  <---------YAB1   ttaagcttgcagcggtttccctcacgttcgatccacgtaaccatatacaatatatatatatagttgaaagttaatcaccgtatagtgcatgatgtttatt  8251200                                                                             --------->TOE1(2)                                                                          <---------ARR11(3)                                                                        --------->ICU4                                     --------->YAB1                     <---------YAB1     --------->AHL20(2)          <---------YAB1                       <---------ICU4 ----------->GT1     <---------AHL20(1)                               --------->YAB1 <---------ANAC46    --------->AHL20(1)     <-----------RAV1(1)      <---------YAB1 -YAB1               <---------ARR11(3)    --------->ARR11(3)--------->ICU4 ------>ZmHOX2a(2)--------   gtggtgtttatatatgttttcaatatatatgtagtatgatcaaaatatgttggacttggagtcatgtttttatcatgatcgtatgaagtttgggtttgta  8251300                                                                                 ----------->GT1                                                                                 <----------ID1                                                                               ---------->DOF2                                                                       <----------DOF2                                  <------ZmHOX2a(2)                    <---------DAG2                           <---------YAB1                  *TSS    <-----------GT1 --->GT1                 <---------ICU4  ----------->GT1--------->ICU4<---------DAG2    --------->AHL20(2)   taattcaagactatatttttcacttaaaaattatagatcaaataggttaatttgagtaatgtttttgttatacctttttcaaaaagaaaaaaaaatgttc  8251400                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  <---------ARR11(3)                                                                  --------->AGP1                                                                  --------->ARR11(3)                                                                  <---------ARR14(2)                                                      <---------AHL20(1)                     <---------------AtSPL8           --------->AHL20(2)                --------->ANAC55(2)             <---------ANAC46                         <---------ARR11(3)                <---------ANAC46             <------MYB46(1)                 <---------HSFB2a(2)  <---------AGP1        <---------ANAC58             <------MYB83               <----------DOF2      <---------ZAT6<------ZmHOX2a(2)             <---------ANAC58     <---------YAB1      --------->AHL20(1)  --------->ARR11(3)        <             <---------ANAC58  <---------YAB1--------->HSFB2a(2) <---------CCA1(2)      <---------ANAC55(2)            --------->MYB59  <------ZmHOX2a(1)    XXXXXXXXXXXXXXXXXXXX>MIR849           <---------ANAC58   ttgttgtctgaagttgggtttgtatagtacaggattattgttcttttccataactatatattagtgtagatctatagatcaagtagttttgcgtaatatg  8251500             <---------ANAC58             <---------ANAC46             --------->ANAC55(2)             <---------ANAC58           <-----------GT1    <---------ICU4    --------->ATHB12    <--------ATHB1    -------->HAHB4    --------->ATHB51                                                                 <-----------GT1    --------->YAB1                                                           <---------AtLEC2    <--------HAHB4                                                         <-----------GT1   --------->AHL20(2)                                                  <---------AHL20(2)   <---------ATHB12                                                    <---------AHL20(1)   <---------YAB1                                      --------->YAB1<---------AHL20(2)   <---------ATHB51                   --------->YAB1  <---------YAB1 <---------AHL20(1)   --------->ICU4                ----------->GT1      <---------ATHB12 --------->AHL20(2)         <-- --------->YAB1          >>>>>>>>>SARD1             --------->WOX13(1) --------->AHL20(1)         <-- ---------YAB1           >>>>>>>>>CBP60g  ---------->DOF2           --------->YAB1------->TEIL  -----   ttctaataattagttacgttgtatgaaatttgggtttgtataatcaaagactatctatcattctcttgtataatattttacatgaatttacatttcaagt  8251600                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                          --------->YAB1                                                                                     --------->AHL20(2)                                                                         --------->TOE2(3)-------->HAHB4         ------->TEIL--------->DAG2                                     <---------ICU4   <---------YAB1    <---------AtLEC2---------->DOF2                                     --------->YAB1 --------->YAB1 ----MYB83     --------------->AGL15                             ----------->GT1 <---------ANAC58---- ----MYB46(1)  <---------------AGL15       <---------YAB1  --------->ZAT14       <---------ANAC58---- ---->ALFIN1<-----------GT1             <---------AHL20(2) <---------ZAT14 --------->AHL20(2)   <----   gggtttgtatgaatttacattataaagtaagtttaaacttatattatgaatgaattcgaactgcaatgggataaacattatatgcgttttaataataggt  8251700         <---------YAB1   ----------->GT1 ----MYB46(1) -------MYB46(3)                   --------------->AGL15 ----MYB83                         <---------------AGL15 ------MYB46(3)                   <-----------------AGL3 ----->MYB111(1)                  <-----------------AG                 <---------At4g35610 ------AtMYB61                    ----------------->AGL1               --------->At4g35610 ----->MYB111(2)          ==================================================bZIP_DOF ------DEAR3(1)           ---------->DOF2                          <-----------HVH21   <---------ICU4 -----MYB55(1)<-----------GT1     ----------------->AG            --------->O2         --------->YAB1 ----->MYB46(2) <-----------GT1   ----------------->AGL3          --------->TGA1a     <---------ATHB12 ----->MYB55(2) --------->ANAC46  ----------------->AGL2          <---------O2      --------->WOX13(1) ----P   <---------AHL20(2)       <-----------------AGL2          <---------TGA1a------->TEIL   tggtgaagtttataatttacaccatttgaaaagccttccaaatttagaaactacatttttgcagacccatgtgagctcatatgaatcaatcatagccttg  8251800                       <---------AHL20(2)                      --------->YAB1                     <---------YAB1                   --------->YAB1                  <---------YAB1               <---------YAB1               --------->ICU4             --------->YAB1                             ---------->DOF2             <---------ICU4                             --------->MYB52(1)     --------->GLK1(2)            <---------ATHB51                  --------->YAB1                   --------->ARR14(2)            --------->ICU4   <---------YAB1  <-------TEIL              ---------->DOF2        ------- ----------->GT1--------->YAB1              --------->AtLEC2   ----------->GT1 <---------ARR14(2) ---   atgttgtaaaacaaattatgattataaaaatgtgatagtatattacatgcataaaaaataaaggagagtaaatgaaagtcaaatctgggttttatgaact  8251900  Previous    Next  AGI:  At3g23140.1    Description:  zinc finger (C2H2 type) family protein. similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G43540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15690.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60872.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 8250586    to: 8251104    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g23145.1    Description:  pseudogene, similar to unnamed protein product, blastp match of 66% identity and 1.8e-28 P-value to GP|26352902|dbj|BAC40081.1||AK087992 unnamed protein product {Mus musculus} Range:  from: 8251359    to: 8253397    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version