Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 <---                                                                                           <---------AHL20(2)                                                                                           --------->AHL20(2)                                                                                           <---------ICU4                                                                                       <---------YAB1                                                                                       <---------AHL20(2)                                      ----------->GT1                                  --------->AHL20(2)                                   <---------ANAC46                                   <---------AHL20(1)                                   --------->ALFIN1                                   <---------AHL20(2)                                 <---------MYB46(3)                                --------->AHL20(2)                                <---------AtMYB61                               <---------ANAC55(2)       <-----------GT1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             --------->ANAC55(1) ------>ANAC58                --------->YAB1                    <-----------------AG  --------->AHL20(1) ------>AtLEC2               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ---------->DOF2  --------->AHL20(2) ------>bZIP60(2)          --------->YAB1                       ===================================== ------>ANAC58          ----------->RAV1(1) <----------DOF2   <---------ARR11(3)--------->ANAC55(2) -----ANAC58          --------->MYB46(3) <-----------GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----ANAC58      <---------YAB1--------->ALFIN1<---------YAB1--------->AHL20(1)--------->ANAC46 ----   atgccatattaacatcgtttatcatccaacaatagtggtggagttactttcttattgagttcaatatactaaaaaggaaaacacataatataattttttc  8220300                <---------ICU4                            --------->AHL20(2)                       --                --------->YAB1                            <---------AHL20(2)                       <-               <---------YAB1<---------AHL20(2)       --------->AHL20(1)                        <----             <xxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------AHL20(2)                        <-----            <---------AHL20(2)                       --------->AHL20(2)                    <---------RVE1(1)           --------->AHL20(2)--------->AHL20(2)  --------->AHL20(2)                    <------------MYB.PH3(1)  ---------->DOF2   <---------AHL20(2)        --------->ATHB12             <-----------GT1--------->ARR14(2) ------------AGL15 --------->AHL20(2)   --------->DAG2--------->AHL20(2)--------->ANAC58  <---------GLK1(2) -------DOF2<---------YAB1   <---------YAB1  <---------YAB1         ----------->GT1  --------->MYB52(1) ============MADS_MADS    ------->TEIL ---------->DOF2<---------AHL20(2)--------->ANAC58  <---------ARR14(2) ----------->AGL15<---------YAB1<---------YAB1----------->GT1---------->DOF2         <-----------GT1<   ttttaaaaggcatttttattattatatgtatattattagaaaaaagtatgattaaaaaaattaaaaagaaatgtaagtaacaacatttaacggatttttt  8220400                                                                                                <----                                                                                               ------            <---------HSFC1(2)                                                               --------            --------->HSFC1(2)                                                               <-------         --------->CCA1(2)                                                                   --------       --------->YAB1                                                                        <-------     <---------TOE2(3)                 --------->ARR11(3)                                    <-------    ---------->DOF2                    <---------ARR11(3)                                    --------   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<---------ARR14(2)                                   <--------  <---------YAB1                       --------->ARR14(2)                                   <-------- ------->AHL20(2)                      <---------GLK1(2)                                    --------- --------AHL20(2)        --------->CCA1(2)                                                --------->YAB1 -----AHL20(2)         <------ZmHOX2a(1)--------->CCA1(2) --------->ARR11(3)         ---------->DOF2 ----AHL20(2)      <---------MYB52(1)  --------->ARR11(1) <---------ARR11(3)    --------->At4g35610 < ---------AHL20(2)<-------GAMYB      ----------->ARR10   <<<<<<<<<RAP2.2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   atttattaaagataagcttcggttaggatacaaaatacaaagatttgccaaactaatttagatattcttcaatcttttgatgagcttcaaagtaataatt  8220500                                                                              --------->AHL20(2)                                                                           <--------HAHB4                                                                           <---------ICU4                                                                           --------->ATHB51    --------->AHL20(2)                                                     -------->HAHB4    <---------AHL20(2)                                                     --------->YAB1   --------->AHL20(2)                                                      <--------ATHB1   <---------AHL20(1)                                                     <---------YAB1   <---------AHL20(2)                                                     --------->AHL20(2) -------GT1                                                             --------->YAB1 --->ICU4                                                              --------->AHL20(2) ->ATHB51                                               --------->AHL20(2)--------->ICU4 --ICU4                                                 <---------AHL20(2)<---------ATHB51 ->YAB1                                          <---------YAB1        <---------AHL20(2) -HAHB4                                      <---------ANAC58         --------->AHL20(2) -ATHB1                                      <---------ANAC58      --------->AHL20(2) >HAHB4                                      <---------ANAC55(1)   <---------AHL20(2) -ATHB51                     ----------->GT1 <---------ANAC46      --------->AHL20(1) -YAB1                ----------->GT1  <---------AHL20(2)         --------->AHL20(2)           ------ >ICU4  <-----------GT1--------->At5g28300 <---------AHL20(2)--------->AHL20(2) <---------ANAC55(2) ---------ICU4  --------->YAB1         --------->AHL20(2)   --------->AHL20(2)<---------AHL20(2)   actaattaatttactgaatgaaaacagtaatttgttaatttttaattacttgtgataaaaaaataaaaaaaaattaataattacttaaattgtctatatg  8220600                                                                                         --------->ANAC58                                                                                         --------->bZIP60(2)                                                              ------------>CBF           *TSS                                                     <---------AHL20(2)                  --------->ANAC58                                                 <---------AHL20(2)                      --------->O2                                                <---------AHL20(2)                       --------->ANAC55(1)                                                <---------AHL20(1)                --------->At4g35610                                                --------->AHL20(2)                <---------At4g35610                                                --------->AHL20(1)       --------->At4g35610 --------                                ----------->GT1 --------->ARR11(3)       --------->ZAT2  --------->ANAC55(2)                           <----------DOF2      <---------ARR11(3)       <---------At4g35610 -------- --->ANAC55(2)    <-----------GT1              --------->AHL20(2)        <---------ZAT2  --------->ANAC46   taatgggagttttttttttttaacaacttcttttaagtaaaatcactaaatatattttaaaaaaaacaataccgaagctgactcagcatccacgtaagca  8220700                                            --------->ARR11(3)                                            <---------ARR14(3)                                            <---------ARR11(3)                                   --------->WRKY38(1)     <----------DOF2                             ------>ZmHOX2a(2)          ------>NtERF2                          --------->ATHB12  --------->ARR14(2)                         <---------YAB1     --------->GLK1(2)                       --------->YAB1       <-----------ARR10                      <---------YAB1        --------->ARR14(3)      <<<<<<<<<<<<<<<<<LFY   --------->ANAC58 --------->AtMYB61  <---------ICU4 --------->WRKY12  <---------ATERF1(1)                   --------->ANAC46 ->ANAC58          --------->ICU4--------->At4g35610--------->DEAR3(1)    <---------MYB46(3) ->ANAC58          <---------YAB1<---------At4g35610<---------DEAR3(1)    --------->ATHB12 --------->ANAC58   aaaccaaaacaaattatagacattattatgatcggagttgactcaaaatcttcgtcgacgacttttatcgaaacaatggttgaatcggagaaaacgaaac  8220800                              --------->ARR14(2)                              <---------ARR14(2)                            --------->DEAR3(1)                           --------->RAP2.3(1)                           --------->ATERF1(1)                           <------NtERF2                          ------>NtERF2                          <---------ATERF1(1)                          <---------RAP2.3(1)                         --------->RAP2.3(2)                         <---------DEAR3(1)                         --------->DEAR3(1)                        --------->ERF1                        --------->RAP2.6(1)                        --------->RAP2.3(1)                                                <---------ARR14(2)                        --------->ATERF1(1)                                              <---------HSFC1(2)                        --------->RRTF1(1)                                               --------->HSFC1(2)                       <---------RAP2.3(1)                                               <---------HSFB2a(1)                       ------>NtERF2                                                     <---------MYB46(3)                       --------->LBD16                                                   --------->HSFB2a(1)                       <---------ATERF1(1)                                             <---------MYB52(1)                      <---------DEAR3(1)                                         ----------->HVH21                      --------->ANAC46                                          <-----------HVH21                     <---------LBD16        ---------->DOF2                     <-----------TGA1                 <---------ARR11(3)        <---------WRKY12                    --------->ANAC46                <---------GLK1(1)        --------->TOE2(3)                --------->ARR11(3)      ---            --------->HSFB2a(2)          <-----------HVH21                <---------ARR11(3)   ------            <---------HSFB2a(2)<------ZmHOX2a(2)          --------->ICU4 <---------GLK1(1) --------->ARR14(2)   acacttgtctccgtctcgaaatctccggcgccgatccaattttcgtcaaaggcacttggcataattctcgtttcgatatctccgtcaccgatggttcctc  8220900                                                                    --------->GLK1(2)             --------->YAB1           --------->ANAC46              --------->ARR14(2)    <---------ARR14(2)                --------->ZAT6                ------->TEIL    --------->ARR14(2)              <-----------GT1                 <---------ARR14(2)       -------- --->ZmHOX2a(1)             --------->TOE1(3)             <---------ANAC58    <---------AHL20(2)    - >ZmHOX2a(1) ----------->GT1--------->TOE2(3)             <---------ANAC58   <---------YAB1  --------   ctcttggatttgcaatggtaaacaaaaaaaccctaaattcacactatcacttagcctctagcgtttttcgaatctgatttttattttggttttgctcgaa  8221000                                 --------->At4g35610                              --------->At4g35610                      <---------ANAC58                      <---------ANAC46       <---------ANAC46 <------NtERF2          ------>MYB83     --------->MYB52(1)--------->LBD16         ------>MYB46(1)              --------->ANAC58    ----------->HVH21 <---------ANAC58    <---------PCF2                    --------->ANAC58        -   --------->DEAR3(2)<---------LBD16      <---------PCF5         ---------->DOF2 --------->ICU4     < ->ANAC58          --------->ALFIN1       --------->TCP20       <---------AHL20(2)               ---- --------->DOF2<------ZmHOX2a(1)----------->RAV1(1)  <-----------HVH21     ------>NtERF2        ----- ->ANAC58   <------ZmHOX2a(1) <---------At4g35610   ----------->HVH21     --------->DEAR3(1)    <----   attgaagcgacggaggaggaagtggcggagagagcagcacaatgggaccagcctgtgtcagagtatttaaagctcgccgagcaatacttagggtttcaac  8221100      --------->MYB59                                                 --------->KAN4(2)  ------>MYB83                                 <-----------HVH21     <---------HSFB2a(1)  ------>MYB46(1)                      ------>ZmHOX2a(2)             --------->KAN4(1) -------->TOE2(3)                     <------ZmHOX2a(2)             <------ZmHOX2a(2) ---------MYB59                      --------->ARR11(3)     <---------YAB1     <---------ZAT6 --->GAMYB                           <---------ARR11(3) ------>ZmHOX2a(2)    --------->MYB52(2) ---->MYB46(3)                --------->HSFB2a(2)     --------->ARR11(3)   <---------MYB52(1)      <- -----MYB111(2)               <---------HSFB2a(2)     <---------ARR11(3)  --------->TOE2(3)        --   aacctaattcggtctatagtttctccgatgctctagagggatctaaacgggtcagtgatcttcttattggatcattcgttagtgttttgaagtaagcctg  8221200  Previous    Next  AGI:  At3g23100.1    Description:  XRCC4 (Arabidopsis thaliana homolog of human DNA ligase IV-binding protein XRCC4). Identical to DNA-repair protein XRCC4 (XRCC4) [Arabidopsis Thaliana] (GB:Q682V0;GB:Q9LS81); similar to tolA protein-related [Arabidopsis thaliana] (TAIR:AT1G61410.1); similar to XRCC4 homolog [Populus nigra] (GB:BAF03494.1); contains InterPro domain Carbamoyl phosphate synthetase, large subunit, ATP-binding; (InterPro:IPR005479); contains InterPro domain DNA double-strand break repair and VJ recombination XRCC4, C-terminal; (InterPro:IPR014751) Range:  from: 8220689    to: 8222155    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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