Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->At5g28300                                                              ------->GAMYB     --------->YAB1                                           ----------->GT1 -------->At4g35610                                         -------->P                          ----- --->YAB1                                       <----------DOF2--------->LBD16                  <---- >WOX13(1)                               <---------AHL20(2) <---------At5g28300  ----------->HVH21 -- >YAB1                             --------->YAB1          --------->MYB52(1)<<<<<<<<<TBF1     <-----   gaagctaacatcactaactcaacaagaacagagtcaaacataattcatttctttttttgactaaccgtgaaaatgcttcttcttcgaccggtttagagga  8208900                                                                                      --------->ARR14(2)                                                                --------->ANAC46      <---------ARR14(2)                                                                --------->ANAC58     ------>MYB46(1)         ------->GAMYB                                          --------->ANAC58     ------>MYB83       <---------At5g28300                                  --------->ANAC58       <---------MYB111(1)      --------->MYB52(1)                 --------->DAG2     --------->ANAC58      --------->ANAC58      <-----------GT1              --------->ANAC58       ---------->DOF2         --------->ANAC58 -- <---------MYB52(1)      <-------GAMYB  ---------->DOF2 ----------->HVH21     --------->ANAC58    --- ---->ARR14(2)          <---------MYB46(3)             --------->At5g28300    --------->ANAC58 <----- -----ARR14(2)   --------->ATHB12--------->MYB52(1)   ----------->GT1 <---------ARR14(2)    <------ZmHOX2a(1) --------->GT1   <---------AHL20(2)--------->ANAC58  <---------DEAR3(1)  <----------ID1  <---------LBD16 -ZmHOX2a(1) <------ZmHOX2a(1) --------->MYB46(3)   <---------ZAT14   --------->ARR14(2) <-----------RAV1(2)   accgttattaaccgaggatttattggaggttgaacaaacggaaaaagcagagagagcggtgaaagcaagccaaatacgacgagcaccaaatccaggagga  8209000                                                                        --------->MYB46(3)                                                                       -------->P                                                                       ------>MYB46(1)                                                                       ------>MYB83                                                                      --------->MYB52(1)                                                                      --------->MYB55(1)                                                                     --------->AtMYB61                                                            <----------ID1                                            <---------ZAT2  --------->ANAC46                                            <---------STY1(2)        --------->MYB46(3)             <                                            --------->STY1(2)------>NtERF2                          -                               --------->TOE1(3)            --------->ANAC58             --------->YAB1                               --------->TOE2(3)          <------ZmHOX2a(1)             <---------ATHB12                               <---------MYB59            =========================HOX2a_HOX2a      <                            --------->GLK1(1)          <---------HSFB2a(2)              <------ZmHOX2a(2)                        --------->ANAC58   ------>MYB83--------->HSFB2a(2)   --------->YAB1 --------- --------->GT1          --------->ANAC58   --------->ANAC58 --------->RAP2.6(2)--------->At4g35610  - ------>ZAT6    --------->HSFC1(2)         --------->ANAC58 --------->ANAC58<------ZmHOX2a(2)    ---- -ZmHOX2a(1)    <---------HSFC1(2)         ------>MYB46(1)=====================================HOX2a_HOX2a   acagtacatagaaaccgaagcttagaacggaaacctaaataaaccaagctagtccatctaggacgccaagaccaaccgatcagaagcccgatcataacag  8209100              --------->ZAT14              <---------ZAT14              <---------ZAT18           --------->GLK1(1)          <---------ARR14(2)     --------->ARR14(2)     <---------ARR14(2)                                                           --------->TOE2(3) -----------------AGL1                                                            --------->TOE1(3) ---------------->AGL2                                                        --------->CCA1(1) -----------------AG                ------->TEIL                  <---------GLK1(1) >MYB52(1)--------->ARR14(2)  <---------DEAR3(1)                  --------->GLK1(1)                 < ---------------->AGL1        --------->DEAR3(1)         --------->ATHB12     --------->RVE1(1)     - ------->HVH21--------->ZAT18 <---------ETT(2)       ----------->GT1    --------->AtLEC2           --   tgacccaaatcggaactgcacatagcaaaacgtcgacgaatgtctctgtaacagaaggtttattgaagaaatccatgaaaatatccataactatagccct  8209200                                                                               ----------->GT1                                                                               <---------ANAC46                                                                             *TSS                                      --------->ANAC58                     <---------TOE2(3)                           <-------GAMYB                                <---------YAB1              -                          <---------MYB46(3)                          --------->ATHB12         ------                          <---------DEAR3(2)                          -------->HAHB4         <-------                          ----------->GT1                            <---------YAB1         <--------           <---------WOX13(1)         --------->ANAC58           --------->AHL20(2)       --------->At4g35610 ---------ARR11(3)       <---------TOE1(2)                    --------->AHL20(2)          <---------At4g35610 -------->ARR11(3)       <---------TOE2(2)         ---------->DOF2   --------->ICU4     <---------RAP2.6(2) ------->YAB1           <---------LBD16        <------ZmHOX2a(2) <---------AHL20(2) <------------CBF=   aagataatttcagattgctctgtttcgccggttacattgaacggaagcgatccaaaagagagaataaaaaaatgattaatgtggtatattgctgctgtac  8209300                                             <----------DOF2                                            <---------ANAC58                                       <---------bZIP60(2)                                       <---------bZIP60(1)                                       --------->bZIP60(1)                                       <---------TGA1a                                       --------->ANAC55(2)                                       =================bZIP_DOF                                       <---------ANAC58                                       <---------ANAC46                   --------->ATHB12    <---------ANAC55(2)                  <---------ZAT6       --------->TGA1a               <--------P              <---------ANAC58              <---------MYB52(1)       --------->O2             <------NtERF2             <---------O2            --------->MYB55(2)        ----------->STF1            <---------MYB46(3)        ----------->bZIP910(1)           <---------ANAC58          <---------TGA2(2)                       --------->ANAC46           <---------ANAC58         ----------->TGA1                         --------->ANAC58           <---------ANAC46         ----------->HVH21                  <-----------ARR10 --------->DOF2==================================MYC_MYB              ------>MYB46(1) ->TEIL   <------NtERF2          <---------ZAT6    ----------->GT1    ------>MYB83    --------->AHL20(2) --SPL7   <---------LBD16        --------->ICU4    <---------MYB46(3) <---------CCA1(2) --DOF2 <---------DEAR3(1)   <---------ZAT14<---------ANAC58     <-----------GT1      <---------AHL20(2) ================================================bZIP_DOF     ----------->TBP--------->ANAC58 <------   cgaaaagacgttggcgggtagtgatagggacagtagtgatgacgtggctttagtcgttaaacttatataaccaaatctcacgcttcatttttttaggcgt  8209400                                 --------->ZAT14                                                   <-                                 --------->ZAT18                                                  ---                                 <---------ZAT14                                            <--------                               <---------------AtSPL8                             xxxxxxxxxxxxxxxx>smallRNA(i)                               <---------------AtSPL3                         <-----------GT1     <--                              <---------ANAC46                              <---------AHL20(2)  <----                        <---------TOE2(3)                               <---------ICU4      ---------                 --------->CCA1(2)   ----------->HVH21                 --------->ICU4 <----------DOF2   <---------ANAC46   --------->CCA1(2)                <---------AHL20(2) <---------YAB1---------->DOF2 ---ANAC46  --------->CCA1(2) <---------ANAC55(1) <---------AHL20(2)   <---------YAB1xxxxxxxxxxxxxxxx   ttattgtggataagataagataagataagattaagtgtactgacatagtgattttttttaatctctactcttcattattttaacagcgcttaaagatgtt  8209500                                                          <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          ------>MYB46(1)                                                          ------>MYB83                                                        <---------MYB59                                                 --------->AtMYB61                                               ----------->RAV1(1)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             --------->SPL7                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------MYB46(3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->GT1                          <-----------HVH21           --------->TOE1(3) <---------ANAC46                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i) --------ANAC46                     <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->TOE2(3) ------>ALFIN1                 <xxxxxxxxxxxxxxxxsmallRNA(i)           ----------------->AG       ---- -ARR11(3)                     xxxxxxxxxxxxxxxx>smallRNA(i)  <----------DOF2                     <--- -------AtMYB61         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->TOE2(3)       --------->ATHB12 -----ANAC46        ----------->HVH21 <-----------GT1  --------->ANAC46<---------MYB59          ----- >ARR11(3)        ----------->RAV1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxx>smallRNA(i2)  --------->At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------YAB1 <x   gtggtggataaaaaatcccagcctgacctgaattcaaaataaacccgtccaccaaaaacccaactttagaaaacctaaatgggtttttgattagtggata  8209600                                       --------->ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ----------->GT1                      <---------ARR14(2)  --------->ANAC58                    --------->GLK1(1)  --------->ANAC46               <---------LBD16  --------->ANAC58              <---------ANAC58 ----->DAG2                     <---------ANAC58  <---------GLK1(1)              <-----------GT1 ------------AtSPL8   <---------YAB1  <---------GLK1(1)               <---------ZAT6            ----- ----->DOF2          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------ANAC46            <---- xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------TOE1(2)      <----------DOF2   <---------YAB1  <--------   aagcacgaaaaaaacccgattgttctgatactattcgtgggtatccaacttgatttctgtcttttttgtttagtgtttatgtttaactactaatatacta  8209700                                                                                      xxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <---------MYB59                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                --------->ANAC58                                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            <---------DEAR3(2)                                                                           <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <---------MYB46(3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                     -------->Pxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                             <---------ANAC55(2)--------->ANAC58                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       --------->AHL20(1) --------->ALFIN1                                                       --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <---------AHL20(1)--------->LBD16                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------AHL20(2)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------AHL20(1)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->AHL20(1)                        --------->AHL20(2) --------->MYB52(1)   <---------GLK1(1)    <---------AHL20(2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------PCF2   --------->AHL20(2)        <---------ANAC58   ----------->GT1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->YAB1            <---------ANAC46<---------MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------YAB1 --------->ARR11(3)      --------->ZAT2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxx ---->ZAT14     <---------CCA1(2)        <---------ZAT2<---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i) -----ZAT14  <---------AHL20(2)          <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---GT1<---------AHL20(2)    <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxx   tactattatatatattttatatctatattttgcttataaactaagctggtatgtaaatatatcatgtaaactacccgtgggtacccaatttgatttctgt  8209800  Previous    Next  AGI:  At3g23080.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71306.1); contains InterPro domain Lipid-binding START (InterPro:IPR002913) Range:  from: 8207394    to: 8209277    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g23085.1    Description:  transposable element gene. hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-91 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana) Range:  from: 8209771    to: 8211162    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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