Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------At4g35610                                                --------->ZAT2                                                --------->At4g35610                                             --------->LBD16                                             <---------At4g35610                                         <---------ARR14(2)                                         --------->ARR14(2)                                        --------->HSFB2a(1)                                        --------->ZAT2                                        <---------HSFB2a(1)                                        --------->HSFC1(2)        ------>ZmHOX2a(2)          <-------                           --------->ZAT18   --------->At4g35610 <---------GLK1(1)           --------                      ---------->DOF2   <---------HSFC1(2)       --------->GLK1(1)        ------>NtERF2                   ----------->RAV1(1)  <---------ZAT2          <---------AGP1           --------->ANAC58 ------->ANAC46   <----------ID1        <---------At4g35610     --------->ARR11(3)       --------->ANAC58 -->TCP15(1)<---------ANAC58            --------->At4g35610     ------->TEIL          ----------->HVH21 ---PCF2    <---------ANAC58           ----------->ARR10   <---------ICU4          <---------ARR14(2) -->TCP20   ===================RAV --------->ETT(1)       <---------YAB1    --------->At4g35610 >MYB55(2)  ----------->RAV1(2) <---------MYB46(3)      --------->YAB1      <---------At4g35610------ -MYB46(3)  <---------ANAC46   <---------AtMYB61<---------ZAT2  <---------ARR11(3) --------->ARR14(2)   caaacaactccattgcctgagcgacaaagcgcgatggtcggaagctccgctgctgaattcatcatggatctctattacagcttcaaatctgacgcctctg  8203100                                                                                               ======        ------>NtERF2                                                                          ====== --At4g35610                  --------->ARR14(2)                <---------ANAC58               <----- ->At4g35610      <--------ATHB1          <-----------GT1       <---------ANAC58               ------ ----->HVH21      <---------ICU4        <----------DOF2      <---------CCA1(2)   <----------DOF2  <--   actctggctctgcctctgaataattcttctcagaacttcaaactttactcttcttctaaactcatttcttgcagaataagtttcttttgaaagacttcta  8203200                                  <---------MYB59                      -------->HAHB4                      --------->YAB1                      --------->ATHB51                      --------->ATHB12                      <--------ATHB1                      <---------ICU4                     <---------ATHB51                     <---------YAB1                     --------->ICU4--------------->AGL15                     <---------AHL20(2)                   --------->YAB1 ----------------->AGL3            --------------->AGL15 <-----------------AGL3                 <---------DAG2            <---------------AGL15 <-----------------AGL2                 <----------DOF2            <----------DOF2       ----------------->AGL2                <---------ANAC58        <----------DOF2    <---------ANAC46        <----------DOF2      <---------ANAC58 <-----------GT1  --------->AHL20(2)  >>>>>>>>>>AGL20               <---------ANAC58 ===========================MADS_MADS >>>>>>>>>>AGL22    <---------AHL20(2) ===================================================MADS_MADS       <---------ANAC58 ----------AGL15  <---------AHL20(2)  >>>>>>>>>>AGL24    --------->AHL20(2)                      <--- --------->AGL15 --------->AHL20(2)<---------------AGL15<---------AHL20(2)             --------->MYB52(1) -------ZAT6========================================MADS_MADS<---------AHL20(2)  <------ZmHOX2a(1) --   gttttagcatctttctttatttaataattgctgagacctaaatatggaaaactctttatttatttgatttgcttgctttttgaggactcaaacggtatcg  8203300                                                                                                   --                                                                                              <------                                                                                           --------->DOF5.7(2)                                                                                        <------MYB46(1)                                                                    <---------ZAT14     <------MYB83          <---------AHL20(2)              <---------YAB1    <---------DEAR3(2)        <--------P ----         --------->AHL20(2)      <---------ANAC58         <---------LBD16      <----------DOF2<------         <---------AHL20(2)      <---------ANAC58         <------NtERF2      <------MYB83<---------ZAT6      <---------ICU4            <---------STY1(2)        <---------RAP2.3(1) <------MYB46(1) --------     --------->ICU4             --------->STY1(2)      <-------TEIL --------->ZAT14<---------TOE1(3) ------MYB52(1)             <---------At4g35610        <---------ABI4(2)  <---------MYB52(1) <------- ------------->AtSPL8       --------->STY1(2)      ----------->ARR10--------->ZAT18<---------TOE2(3)   ttttgtactaattaaatagaagctcattttagctagcttgagttatatttgataagatgcgccggttttgtgctctgtttggtttaaggtagggttaacg  8203400       --------->ARR14(2)       ------->TEIL      <---------CCA1(2)   ------>ZmHOX2a(2)  <------ZmHOX2a(2)  --------->CCA1(2) <---------AGP1 <---------ARR14(2) --------->AGP1 --------->ARR14(2) <---------ARR11(3)             ------>NtERF2                                        <---------AHL20(2) --------->ARR11(3)             <------NtERF2                                        <---------YAB1 --------->ARR10               --------->ANAC58                            ----------->GT1 ---TOE1(3)                    --------->ANAC46                           --------->DAG2 ------>DOF2                   --------->ANAC58                  <-----------------------TaNAC69(2) ---TOE2(3)                   <---------LBD16            --------->At4g35610*TSS  --------->ICU4 ->MYB52(1)                <-----------GT1             <------ZmHOX2a(1)---------->DOF2 --DOF5.7(2)          <----------DOF2               <-----------RAV1(2) --------->MYB52(1)   aaagatctgtatccaaacagtcttcttttttgcccgccatggataaacacagagccaggagcttagtgacgaactaaaggtgaaatttttattgaaagtt  8203500                                                           ---------->DOF2                                                ------>MYB83                              <----------                                                ------>MYB46(1)                      --------->MYB46(3)           --------->ATHB12                    ----------->RAV1(1)                   <---------MYB55(2)   --------->AHL20(2)                        --------->MYB46(3)               <-----------GT1   tcaatttttatatggattggattacagaaacatttctatgtgaataaaccaacaatggcgatgaagcccagtctccatttttgcccaactactgtcacga  8203600                                                                                                 ----                                                                                                 <---                                            <---------TOE2(3)                                    <---                                     <---------MYB52(1)                                   <---------MYB52(1)                                   <---------ANAC58                                  <-----------GT1                              <---------At4g35610                                 --------->ALFIN1                              --------->At4g35610                                 <XXXXXXXXXXXXXXXXXX                          ------>ZmHOX2a(1) <---------TOE1(3)                ---------->DOF2     ---- -HVH21           ---------->DOF2  <---------ANAC58                     <---------ANAC46 <----------DOF2   agaagtttgtctactcgtttcaaagctccttctgcttccgtttcttaaggtatagttcatcaatttcacttgggtcttgtaaaggtgttacctttagttc  8203700                                                        --------->ALFIN1                                                        <---------ANAC58                                                        <---------ANAC58                          ---                                                      <---------ANAC58                            ---                                                      <---------ANAC58                            ---                                                      <---------ANAC46                            <--                                                 --------->YAB1                              <-------                                                 -------->HAHB4                         --------->ANAC58   --------->ICU4                                <---------ICU4                         --------->ANAC55(1) ----->HSFB2a(2)                                --------->ICU4                          --------->ANAC58 ------HSFB2a(2)               <----------DOF2  <---------ATHB51                        --------->ANAC55(2) ------HSFC1(1)      <------ZmHOX2a(1)        --------->YAB1                            <---------ANAC55(2) XXMIR319C        --------->HSFB2a(2)        <---------YAB1                            <------------- ----->HSFC1(1)   <---------HSFB2a(2)      ----------->GT1                     <---------GLK1(1)-----   gagaaatgatcaaattgcatcgaggaggtttagctttagtagggattgtaataatggtgtgtggctagagaattggaatagaattcagaaacgtaatcaa  8203800              --------->MYB52(2)                      <------NtERF2              --------->MYB111(2)                   <---------DEAR3(1)              <---------MYB46(3)                    --------->ETT(1)              --------->MYB46(2)                  <-----------HVH21 ------>TOE1(3)                          <---------GLK1(2)                <---------YAB1 ------>AtMYB61                          --------->ARR14(2)             --------->YAB1 ------>TOE2(3)<-------GAMYB             <---------ARR11(3)            ----------->GT1 -------MYB59 --------->MYB111(1)        --------->ARR11(3)            --------->ICU4 --ATHB12 --------->DAG2                 <---------ARR14(2)            <---------YAB1 ----------TaNAC69(2)                  ----------->ARR10         --------->ALFIN1              <----- -->TEIL---------->DOF2       ---------->DOF2 <---------LBD16<---------YAB1                    <-----   cctaaacctccaaaggtagttgtgaattatcgaaaagaagggagattttctgggtcggagattgtgagtggtgatgataatagaagtagagatggtgatg  8203900                                                                                                   --                                                                                                   ==                                                                                                  <--                                                                                                  ===                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                   <---------------AtSPL8                       <----                                                  <------ZmHOX2a(1)                         ---------                                          <---------ARR14(2)                         ================ ----YAB1     --------->ARR11(3)         <---------GLK1(1)       <------ZmHOX2a(1)   <------ZmHOX2a(1) ----AtMYB61  <---------ARR11(3)      ----------->GT1  <-------TEIL                  ================   gtagtactatggagaagatagtggagaaattgaagaaatatggatatatggaggaggttcagaataaggagattgaacaagagagaaggattgagaaagg  8204000  Previous    Next  AGI:  At3g23060.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G06770.2); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G06770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22649.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 8200643    to: 8203240    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g23070.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14510.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79523.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71295.1); similar to CRM family member 3 [Zea mays] (GB:NP_001106061.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 8203476    to: 8207426    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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