Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    ------->TEIL               --------->ANAC58               --------->ANAC58                             --------->LBD16          --------->ANAC58                                 <---------ANAC46          --------->ANAC58                                 <---------LBD16            <---------HSFC1(2)      --------->ANAC58                                   --------->MYB52(1) <---------MYB52(1)      --------->ANAC46                             --------->HSFB2a(2)     --------->LBD16<---------ANAC46      --------->ANAC58     <---------ARR11(3) --------->HSFC1(2)          --------->ANAC55(2)     <---------LBD16       --------->ARR11(3) <---------HSFC1(2)        ------>ZmHOX2a(1) <---------ANAC58 ------>NtERF2 --------->ANAC46            ---------->DOF2<---------LBD16 --------->ANAC46<---------ANAC58   ctctgcccacggactcaacgcatcttcaacatcttcaatactatccaaagcttctaaaatagcgggaatacatcctccgtaactcagacgtttcgtcgaa  8179400                   --------->MYB46(3)                  -------->P               <---------MYB52(2)            <---------ZAT14            --------->ZAT14                   <---------ICU4          --------->ANAC46                 <---------CCA1(2)       <---------ZAT18              ------>MYB46(1)                                                 -       --------->ZAT18              ------>MYB83 <-----------GT1                                    <       <---------ZAT14            <---------MYB111(1)                        --------->YAB1        <-       --------->ZAT14         --------->ANAC46<----------DOF2              <---------ATHB12  -------     <---------ZAT18  ------>MYB83--------->AtMYB61                     <---------ATHB12      -------    <---------ANAC58  ------>MYB46(1)--------->ARR14(2)          ------->GAMYB  ------>ZmHOX2a(2)  --    <---------ANAC46<---------MYB59 <---------CCA1(2)           --------->MYB46(3)            -------    <---------ANAC58--------->AtMYB61<---------ARR14(2)         <---------MYB52(2)   <---------GLK1(2)   cacttggtgtgcacttcactaaccaaaccattcccaccaaatctcgcatctttacttctcttatcaacaaacccatcaatgatccctgattttccgacgc  8179500     <---------ANAC46                 <------NtERF2                                    ==============     <---------ANAC58                ------>NtERF2                            --------->ARR14(2)     <---------ANAC58               <---------ETT(2)                      <-----------------AGL3  <---------MYB52(1)                ----------->HVH21                     <------NtERF2<----------DOF2 -------->YAB1                      --------->DEAR3(1)                   ------>NtERF2<---------ANAC58 ---------ICU4                     --------->RAP2.3(1)                  --------->ETT(2) --------ATHB12                   --------->LBD16              <---------ALFIN1  <-----------RAV1(1)= -->ANAC46                      <---------LBD16           --------->SPL7<---------ETT(2)            - -->ANAC58                    <-----------GT1          ------->GAMYB <-----------RAV1(1)    <-------- ------->MYB46(3)  --------->DAG2 ------>NtERF2       --------------->AtSPL3  <---------ARR14(2)    < -->ANAC58        ---------->DOF2<---------LBD16    --------->MYB52(1) ---------->ID1 <---------ANAC58   aaccattacttgggtttactaaaagtaagttttttccggcgacaacttcatgagcaacggtaccacaacctctgtcgccatttctggtgcttctctgtgg  8179600                          --------->ANAC55(2)                          <---------ANAC55(2)                          --------->ANAC58                     --------->LBD16                     ------>ZmHOX2a(1)                --------->GLK1(1)           <---------O2   ----------->GT1           <---------TGA1a--------->ANAC55(1)           =====================================bZIP_DOF           --------->TGA1a--------->ANAC58       ---------->DOF2           --------->O2  <-------TEIL        <---------ANAC58   <-----------HVH21 <---------------AtSPL3  <---------ANAC58 ====================bZIP_DOF                <---------ANAC46                                  ------ ====================bZIP_DOF      <---------At4g35610                                <---------TOE1(3) ----->ZmHOX2a(1)   <---------ANAC46 <----------DOF2                                  <---------TOE2(3) ---RAV1(1)=====================================bZIP_DOF                      <---------GLK1(1)<----- ----------DOF2--------->MYB52(2)  --------->At4g35610       <---------AHL20(2)     <---------MYB52(1)   tcctttgtcactctcgtgagttcctggtacgtaattctgcttcaatttcttgaaagatgggaatttatcgagaggcgaagaaatcggtaaggtttttgta  8179700                          --------->HSFB2a(2)             --------->ANAC58                          ------->GAMYB                            -----             --------->ANAC58             ----------->RAV1(1)------->GAMYB                 ---------- --->HSFB2a(2)            <---------HSFB2a(2)        <---------At4g35610                <----------ID1 ----HSFB2a(2)<---------At4g35610    <-------TEIL    --------->At4g35610             ---------->DOF2   gaacagagaacatgtaagctacttccatctagacgaagattcaacaacatttttcaactgcaacgagcattagtttattcactagagaaaaggaaaagaa  8179800                                                                                      <---------MYB46(3)         <------------CBF                                                           <-------GAMYB     ------>NtERF2                         ------->TEIL                            <---------ANAC58    --------->DEAR3(1)                   <---------SPL7                 <---------RVE1(1)    --------->DREB2C(2)              <---------DEAR3(1)                 <---------CCA1(1)   --------->MYB46(3)               <---------LBD16                    <---------ARR11(3)   --------->DEAR3(2)     ---------->TaMYB80                           --------->ARR11(3)   --------->ORA47(2)  ----------->GT1--------->LBD16           ----------->TGA1   <---------ANAC46 ---->GLK1(2)<----------ID1  <-----------GT1    <---------GLK1(2)      <---------GLK1(2)        ----- >DOF2------------>CBF--------->ALFIN1------>NtERF2          --------->GLK1(2)     <---------ANAC58 -   tttgcaccgccaattgcgacgaaggtggtatatacttctccggcgaacgtgattctctgtaaaattctgacgagatttttttctggcgttgttgctaatg  8179900              ---------->DOF2           --------->ANAC46           --------->ANAC58                                           <---------ANAC46          --------->ZAT18                                             <---------ANAC55(2)          <-------PIF4                                                --------->ANAC55(2)          ------->PIF4                                           <---------ICU4        <---------ZAT18                                       --------->YAB1       <---------ANAC46                                      ----------->GT1         --------------->AGL15       <---------ANAC58                                    <------------CBF          <---------------AGL15       <---------ANAC58            ---------->DOF2       <---------AHL20(2)         -----------------   <------------CBF       ---------->ID1                 --------->AHL20(2)         <---------------- <---------AHL20(2)   <----------DOF2                   --------->AHL20(2)      ---------->DOF2     - ------>GT1--------->ANAC58   <------------CBF       <------ZmHOX2a(1)<---------ANAC58     <---------TOE2(3) -------->AHL20(2)    ------>ZmHOX2a(1)            <---------TOE2(3)  <---------ANAC58   ---------->DOF2   gataaaattgcgcgcgcaaaggtcctttgtccgattggaaagagaatacatttgaggattaaattgataatttcgtaatagtttaagcccttaaaggaaa  8180000                                                           <---------GLK1(1)                                                           --------->GLK1(1)                               <---------AHL20(2)  <---------AHL20(1)                             <-----------TBP       --------->AHL20(1)                           --------->AHL20(2)   <-----------TBP --------->DAG2            <---------AHL20(2)   --------->AHL20(2) >AGL2       ----------->RAV1(2) <---------HSFB2a(2)    <---------AHL20(2)                  ------->TEIL -AG    --------->ZAT14   <---------AHL20(2)  <----------DOF2                        --------->YAB1 --------->DOF2------>ZmHOX2a(1) --------->HSFB2a(2)<---------AHL20(2)         --------->TOE2(3)   taaaaagctgtaaactcctgaagttttatttatttatagaaaacaactctttatatatttgatttccaaataatcccaaaaccttgatcatatgcacata  8180100                                                                                   <---------MYB52(1)                                                                                  <------MYB83                                                                                  <------MYB46(1)                                                                                 --------->MYB59                                                                                <---------MYB55(1)                                                                                --------->SPL7                               <---------ANAC58                                <---------MYB52(1)                               <---------ANAC58                               <---------SPL7                             <-----------GT1 ----------->GT1                 <---------ANAC58                         <---------YAB1 --------->ANAC46                     <---------ANAC58      <-                  --------->ICU4        --------->ANAC55(2)                  <---------ANAC46    ----       --------->YAB1    <---------AHL20(2)  <---------YAB1            --------->ATHB12          <---   agaaccctattagaagagaaatgattttttattacttggttcacataatgaaaaaaacatacttgaaaactagtcattggcgttcggtattttggttcag  8180200                                                                             <---------YAB1           <---------HSFB2a(1)                                            <---------YAB1           --------->HSFB2a(1)                                         <---------YAB1         <---------ARR11(3)                                            <---------AHL20(2)           -         --------->ARR11(3)                                         <---------YAB1                  -      --------->HSFC1(1)                            <---------AHL20(2)<---------AHL20(1)         <---      <---------HSFC1(1)                         --------->YAB1     <---------TOE2(3)         -------      <---------HSFB2a(2)                        --------->TOE2(3) <---------AHL20(2)       <--------      --------->HSFB2a(2)                     --------->YAB1       --------->AHL20(2)       --------- --------->LBD16                        --------->GLK1(2)        <---------YAB1             <-------- --------LBD16                          --------->ARR11(3)    <---------AHL20(2)           --------->TOE2(3) ----->ARR14(2)                  <---------ZAT6  --------->TOE1(3) --------->YAB1          --------->YAB1 ------ARR14(2)          <----------DOF2<---------ARR11(3)    --------->AHL20(2)     --------->ANAC55(2)   ttccggttcgagaacttcccatgagcccttttgtagtctaaaaatctataatcttaaattgtgttttattaatattattatgtttttatgtaatattaat  8180300  Previous    Next  AGI:  At3g23020.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G73710.1); similar to hypothetical protein OsI_009889 [Oryza sativa (indica cultivar-group)] (GB:EAY88656.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71278.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE86686.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8177222    to: 8179750    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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