Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->TOE2(3)                                                           <<<<<<<<<ARR1         --------->YAB1                                                           <<<<<<<<<ARR2     <------ZmHOX2a(1)                     --------->DEAR3(1)           --------->MYB46(3)        --------->ANAC46       ----------->GT1 <------NtERF2             ------>MYB83               --------->ANAC58 ------>ANAC58       <---------DEAR3(1)          ------>MYB46(1)            --------->ANAC58 ------>ANAC46 --------->DAG2                   ----------->RAV1(1)       <---------AtLEC2    ------- ------>ANAC58---------->DOF2<-----------GT1  --------->MYB46(3)     <----------DOF2     ------->TEIL   acccaaatgaagtttataaagcgtcgtcgttttaccagcattatccaaaccaacaacaacaatcttatactcttttgcaggaaacatcatgaaccaaaac  8137500                                                        --------->AHL20(2)                                                   --------->AHL20(2)                                                  <---------ATHB12                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           --------->ARR11(3)                                           --------->ARR14(3)                                           --------->ARR14(2)                                           <---------ARR14(2)                                           <---------ARR14(3)                                 --------->YAB1------>ZmHOX2a(1)       ------->TEIL  ------>ZmHOX2a(1)     <---------ARR11(3)          <----------DOF2    --------->HSFB2a(2)    <---------YAB1   ===============================HOX2a_HOX2a  <---------ICU4           <---------HSFB2a(2) -->ARR14(2)         ==============================HOX2a_HOX2a--------->ANAC46 <------ZmHOX2a(2)   --   ctcgacatgaatgctcccatctcctccaatttctatcacaaacaagatcctaatcaaataaaacacatcattacttttacgatcaaattgttctacaaac  8137600                              ------>ZmHOX2a(1)                        <-------TEIL        <---------ATHB12                              <---------ARR14(2)                  ---------->DOF2     <-----------GT1                                     --------->ARR14(2)               --------->TOE1(3) <---------AHL20(2)                                       <---------GLK1(2)            --------->GLK1(1) <----------DOF2                --------->ANAC58           ----------->ARR10        <---------HSFB2a(2)  --------->TOE2(3)               --------->ANAC58         <------ZmHOX2a(2)     <<<<<<<<<<GATA-1  --------->CCA1(2) --------->MYB46(3)  --------->ANAC46        --------->ARR14(2) --------->GT1 --------->TOE2(3)--------->AHL20(2) <-----------GT1          ---------->DOF2      ----   agagtgaaatcgagaaaccctaaagatacatcctttaaattgacccatcaattttacaaacccaagtaattgaatcagagaagcccagatcagatttgga  8137700             <-------TEIL            --------->ARR14(1)           <---------GLK1(2)                           --------->LBD16           <---------ARR14(2)                        <---------LBD16                    <---------ARR14(2)           --------->ARR14(2)                      --------->ARR14(2)                   --------->GLK1(2)         <---------TOE1(2)                <---------AHL20(2)                            --------->ARR14(2)       ----------------->AGL1   --------->TOE2(3)  <---------ARR14(2)                  <---------GLK1(2)     <------ZmHOX2a(2)       ------>MYB83 --------->AHL20(2)                      --------->At4g35610   ------->GAMYB   --------->DAG2     --------->AHL20(2)                          --------->ZAT2  --------->MYB46(3)         ------>MYB46(1)  <-----------GT1            --------->TOE1(3)         <- ----->CCA1(2)    ---------->DOF2     <---------AHL20(2)                 --------->TOE2(3)    <------   tacaacgatcccagattcgataaagttaaccaaatctaaattatatatatacaaatcgggaaatttgtgatcaaaccttgaatcagctagaatctgaaga  8137800                                 <<<<<<<<<TBF1                          --------->DAG2                               ---------->DOF2                   <------ZmHOX2a(2)                                 ------>ZmHOX2a(1)                  <---------ARR11(3)                                --------->TOE1(3)                  --------->ARR11(3)                         <---------ARR14(2)    --------->ALFIN1           --------->GLK1(2) --------->ARR11(3)              --------->ARR14(2)  <---------ANAC46          <---------GLK1(2)  <---------ARR11(3)           <---------TOE1(3)     <---------MYB46(3) >> --------ZAT14   --------->GLK1(1)                        <---------TOE2(3)  --------->At4g35610>>>>> ---YAB1----------->ARR10---------->DOF2             <----------DOF2--------->TOE2(3)        >>>>>>>>   ttgcagaggtaagaatcggagatcaaaaaaagttcttcttctactattttgtaagcttttgaggttccttccttaaagcagatgggtggagagaagaaga  8137900                                                   -------->ATHB1                                                   <---------ICU4                                                  <---------AHL20(2)                                                  --------->AHL20(2)                                           --------->ARR11(3)                                           <---------ARR11(3)                                         <---------YAB1      <----------DOF2                                       --------->YAB1  --------->YAB1   ---------->DOF2                    <---------YAB1 <---------YAB1 >>>>>>>TBF1--------->LBD16    --------->At5g28300<---------ATHB51              --------->AHL20(2) >>>>TBF1  <---------LBD16    ----------->GT1------>ZmHOX2a(2) --------->AHL20(2) >TBF1    <---------LBD16   *TSS   --------->ICU4 --------->ICU4                <---------AHL20(2)   agaagaaaagtatgcgggaaacaatgtcaaaactgtaaatatgatgatctaaattattaataacttttaatataacaaatattaaaatgaaaactatata  8138000                                                              --------->ANAC46                                                              --------->DREB2C(2)                                                            <---------At5g28300                                                          ----------->HVH21                                                          --------->TGA2(2)                                                         <-----------TGA1                                                         <-----------HVH21                                                        --------->bZIP60(2)                                                        --------->O2                                                        --------->ANAC46                                                        --------->ANAC58                                                        <---------TGA1a                                                        <---------O2                                                        --------->ANAC58                                                        <---------ANAC55(2)                                                        --------->ANAC55(2)                                                        --------->ANAC55(1)   ------>NtERF2                                                        ====================================bZIP_DOF                                                       <-----------bZIP911(2)--------->ANAC46                                                       <-----------STF1    <---------ATERF1(1)                                                      <---------ALFIN1     <---------ALFIN1                                                    ------>MYB83          --------->ANAC58                                                    ------>MYB46(1)       --------->O2                                                  <---------MYB46(2)      <---------O2                                                  --------->DEAR3(1)      --------->ANAC46                                                  <---------MYB52(2)      --------->bZIP60(2)                                                  --------->MYB46(3)      --------->ANAC58                            <------NtERF2        --------->ANAC58         ==================bZIP_DOF                            <---------At4g35610  <------NtERF2--------->DEAR3(1)                      --------->RAP2.6(3)  ----------------------->TaNAC69(2)--------->ANAC58                     --------->MYB52(1)--------->TOE2(3)--------->TGA1a   --------->TGA1a                ==================================================MYC_MYB ----------->HVH21             <---------ANAC58        <-----------------AGL1 <---------ATERF1(1)             <---------ANAC58  ------>NtERF2     --------->ANAC58  <---------MYB52(1)    ------->TEIL        <----------DOF2  --------->At4g35610  <---------ABI4(2)------>NtERF2 --------->ANAC58 --------->ICU4 -------->P  --------->At4g35610 ------>NtERF2--------->MYB46(3)  ---------->DOF2   gtaatgttttcttttacttacccaaacggctgcagcctctaccgtaatggcaccgaacacgtcaccgccattagccacgacgccaaagacgaacattgtt  8138100                                                                                    <-----------GT1                                                                                    --------->YAB1                  --------->ARR11(3)                                         <---------TOE2(3)                  <---------ARR11(3)                                  <---------ARR11(3)              ---------->DOF2                                         <---------AHL20(1)        <<<<<<<<<<GATA-1                                             <---------CCA1(2) <---------ICU4       --------->GLK1(1)                                       <----------DOF2     <---------YAB1       <---------GLK1(1)       ----------->GT1          ---------->CDC5<---------AHL20(2) --------->AHL20(2)   gaagacttgaaatccacaaagatgtttttaaacgagaaaaaaaaaaactcaaacgggcttagggcctttccatatattttagattataacaattacattt  8138200                                                                                 --------->ICU4                                                                       <---------YAB1                                                                      --------->AHL20(1)                                                                      <---------AHL20(1)                                                                      <---------AHL20(2)                                                                     <---------ICU4                                       <---------AHL20(2)        --------->AHL20(2)                                       <---------AHL20(1)        <---------AHL20(2)                                       --------->AHL20(1)       --------->AHL20(1)                   <---------AHL20(2) --------->YAB1  --------->YAB1<---------YAB1         --------->YAB1       --------->ANAC46        ----------->GT1      --------->AHL20(2)--------->AHL20(2)  <---------YAB1     ----------->RAV1(1)<---------AHL20(2)         <---------AHL20(2)--------->YAB1  ----------->GT1     <---------ALFIN1  --------->AHL20(2)      <------ZmHOX2a(1)<---------AHL20(1)  <---------YAB1  ------>NtERF2    --------->AHL20(2) <---------AHL20(2)        <---------AHL20(2)--------->YAB1  --------->PCF2  --------->AHL20(2)  --------->AHL20(2) <-----------GT1         <---------ATHB12  -- <-----------TCP11(1)  <---------AHL20(2)    <---------TOE2(3)  --------->AHL20(2)<---------ICU4  <--   tctcggcccacagaagtatataaaattaaatagaagtaaattatattgaggatttaaaataacaaatttaattataatttgaaatcatggttataatacg  8138300                                                     ----------------->AGL2                                                     <-----------------AGL3                                                     ----------------->AGL3                                                     <-----------------AGL1                                            <---------AHL20(2)       --------->GLK1(2)                                            --------->AHL20(2)       <-----------ARR10                                            <---------AHL20(1)       <---------ARR11(1)                                           --------->AHL20(2)        --------->ARR14(2)               --------->AHL20(2)      <---------YAB1<-----------------AGL2         --------->TOE2(3)          <---------AHL20(2)               <---------ARR14(2)        ----------->GT1             --------->AHL20(2)               ------->TEIL   ----------->HVH21           <---------YAB1        <-----------------AG <---------ANAC46           --------->ICU4 <---------AHL20(2)       <---------ARR14(1)              - ----------->GT1            <---------YAB1<---------YAB1    --------->MYB59                        <- ---->ZmHOX2a(2)<---------AHL20(2)  <---------AHL20(1)--------------->AGL15      <---------YAB1------ ----ZmHOX2a(2)<---------AHL20(2)   --------->AHL20(1)<---------------AGL15<---------YAB1     <------   atcgtgtgaaatgttaattaaatgcttatattgattattttattattaaatttgtgctaattttggtaacgaatcttatttttgttattgtatacgatga  8138400  Previous    Next  AGI:  At3g22950.1    Description:  ATARFC1 (ADP-ribosylation factor C1); GTP binding. similar to ATARFA1D [Arabidopsis thaliana] (TAIR:AT1G70490.2); similar to ATARFA1D [Arabidopsis thaliana] (TAIR:AT1G70490.3); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71268.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation f Range:  from: 8136189    to: 8137928    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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