Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->AtMYB61                                                   <---------ALFIN1                                                --------->AtMYB61                                                <---------ALFIN1                                                --------->DEAR3(1)                                               --------->MYB46(3)                                             --------->ANAC46                                           ------>ZmHOX2a(1)                                       <---------ARR14(2)                           --------->TOE2(3) <---------ALFIN1                                     <--             --------->ARR11(3)   --------->At4g35610                                    --------->ATERF1(1)             <---------ARR11(3)   <---------At4g35610               <---------ICU4  <---------HSFB2a(2) ---->ZmHOX2a(2)     --------->ANAC58  --------->GLK1(2)           <---------YAB1   --------->HSFB2a(2) ----->ARR11(3)      --------->ANAC46  --------->ARR14(2)        --------->YAB1    <---------LBD16--- ------ARR11(3)      --------->ANAC58 <---------GLK1(2)------>ZmHOX2a(1)        <---------GLK1(1)<---   atctaaactaaacaacatctcccaagaaacattatcagcagaatcctccaccacctcctcttcatactcatcatcgtcttcgatttctggagactcccta  8092700        <---------ARR11(3)        --------->ARR11(3)       <---------CCA1(2)          <<<<<<<<<TBF1       <---------GLK1(1)  <---------GLK1(2)            <---------ANAC58 -------ARR11(3)      <---------At4g35610              <---------ANAC46 ------>ARR11(3)      <---------ZAT14                  <---------ANAC58 ------CCA1(2)        --------->ZAT14     --------->GLK1(2) ---------->DOF2                  <-------   aatcttttgatatcttcttggtactgcagattgttcttcttcagtttctgtctcattgcgttcaaagccttggagttactagtactcatcttctcctttg  8092800                       --------->HSFB2a(1)                       <---------HSFB2a(1)                      <---------ARR11(3)                     --------->GLK1(1)                     <---------GLK1(1)                  --------->ANAC46       <-----------GT1--------->ARR11(3)                                               <---------MYB46(3)       <---------ARR11(3)                                            --------->ANAC55(2)<-------GAMYB       --------->ARR11(3)      --------->REM1(1)                 <----------DOF2       --------->MYB52(2) --------->YAB1   --------->ANAC58                   ---------->DOF2<---------LBD16  <---------MYB52(1) ---DOF2          --------->ANAC58       --------->ARR11(3) <------NtERF2       --------->GLK1(2)   ttttcatattatcttcattcaagaaatcttccaacatcacaagggtcttgatatacaaagtcggagtctttacggacttactaatctgtttgttgagttt  8092900                          <--------ATHB1                          --------->ATHB51                          -------->ATHB1                          <---------ICU4                          --------->YAB1                                                           <-                    --------->ANAC46<---------AtLEC2          <---------ZAT6              -----------              --------->ANAC58     <-------TEIL               <-----------RAV1(1)         <----------DOF2              --------->ANAC58 <---------TOE2(3)   --------->ARR14(2)                    <-----------        <---------ANAC46  --------->ATHB12         <---------ARR14(2)                  <-----------GT1        <---------ANAC58 <---------ATHB12          <---------GLK1(2)                  <---------CCA1(2)        <---------ANAC58 --------->ICU4  <---------ANAC58 --------->ZAT14          --------->TOE2(3)       --------->MYB52(2)<---------YAB1  <---------ANAC58 <---------ZAT14   ------>ZmHOX2a(1)      <-   ctcaaacgtttcttgcaagtaaacacaatcattgatgttcatggcatgcttcatattctctatagtgttggccatctcctcaaaacgtttatcttttttt  8093000          <-------MYC3                       <---------ANAC55(2)          ------->MYC3                     <-----------RAV1(2)       <---------ALFIN1                  <-----------TGA1     ------->GAMYB                       <-----------HVH21    --------->MYB46(3)                  --------->DEAR3(1)  <-----------GT1           ----------->RAV1(1)<--------P                    --------->ANAC46 --------ANAC58             ===========================RAV         --------->ALFIN1 ---->AGL15              --------->AtMYB61<---------MYB52(1) <---------DOF5.7(2)               ------ ------AGL3            --------->SPL7 <---------At5g28300    --------->MYB52(1) <---------ALFIN1 --------ANAC58  <-----------GT1 <-----------ARR10     <---------AtLEC2  <-----------GT1 <----------DOF2   ggcttaaccacacgtttagtatccataccacaacaaatctcaccgtcaggtaagtctgcaaggtaacgagtgttgttaccctcaacctcttctttttcaa  8093100                                               ---------->DOF2                                            --------->ANAC58                                            --------->ANAC58                                            --------->ANAC46     --------->GLK1(2)         --------->YAB1                                   --------->ANAC58              ------------>MYB.PH3(1)  <---------YAB1                                   --------->ANAC46           <---------TOE2(3)--------->AHL20(2)         <---------ICU4 <---------ALFIN1--------->YAB1--------->DAG2         --------->AHL20(2)<----- ---->DOF2     <----------DOF2     --------->ANAC58  ---------->DOF2----------->GT1 <---------TOE2(3)   agtcactctcatcttcactttcacttccactctgtaaacgaaacataagcaaagaaaaagcattaagaaactgttacaaaaaaatataggttttgataag  8093200                                                                                 --------->TOE2(3)                                                                        ------->TEIL                      --------->TOE1(3)                                 --------->GLK1(2)                --------->ANAC58                         <---------MYB52(1)    <-------TEIL                --------->ANAC58                        --------->TOE2(3)----------->RAV1(2)      --------->ARR11(3)                           --------->At4g35610 <---------ARR14(2)      <---------ARR11(3)                           <---------At4g35610 --------->ARR14(2)  ---------->DOF2    ----------->RAV1(2)       <-----------TGA1        --------->ARR11(3) ----ANAC55(2)---------->DOF2                <------NtERF2           ----------->ARR10          <----   taaacaaaggtctatggaaagaaacctgagcgaaaaaacgagaagtcgtcgtcatcttcgttagcaaggagaagaacctgatacatcaaaatataaaact  8093300                          ----------->HVH21                    <-----------RAV1(2)                <------------CBF              <---------AHL20(2)                               <---------MYB59            >>>>>>>>>TBF1              <---------YAB1                                   --------->TOE1(3)  --------->ICU4            --------->CCA1(2)                                  --------->TOE2(3)---------->DOF2           <---------ARR11(3)               <---------------AtSPL8           --------->ANAC58 ------DOF2--------->ARR11(3)  --------->ANAC46              ------->TEIL    --------->ANAC58   ttgagacgatggagatataattgcaggggggacacaaaacatagatgaagaacaaaaaactcgaacctaaaatttgttcaaggaaagatgaagaagaatg  8093400            --------->ATHB12          <---------WOX13(1)         <------------CBF        --------->ATHB12                                 <---------WRKY18(1)       <---------YAB1                                 <---------ANAC58      --------->TOE2(3)     <----------DOF2                                  <---------ANAC58     ----------->GT1    --------->TOE2(3)           <---------WOX13(1)<---------At4g35610    ------->TEIL            <--- <-----------GT1               <------------CBF   <---------GLK1(1) --------->MYB52(1)           <---   aaattacctttgattgatttgagacgatggagagattgatgtgagacgatggagatgcttgactagagaataacgaatcgttaagaagagaggcgaatta  8093500                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                            <--------                                                                                            ---------                                                                                 <----------DOF2   <-                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       --------->ATHB12 --------->ATHB51                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <-                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <-                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---                                                         --------->MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-------                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxx                                                       --------->ICU4  --------->YAB1   --------->YAB1                                 <----------DOF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---------AHL20(2)                       --------->ATHB12               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AHL20(2)                    <---------ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->YAB1                    <---------ANAC46               --------->LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <---------ANAC58              --------->TOE2(3)    <---------ICU4   <--------HAHB4                    <---------ANAC55(1)           --------->ANAC55(2) <---------ATHB12  <---------ICU4                    --------->ANAC55(2)           --------->ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC55(2) --------->ICU4   --------->ICU4 ------TOE1(3)      <---------ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxx ------TOE2(3)    <-----------GT1<---------DAG2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->AHL20(2)   gggtttactataagagaatattacgtgattagacacttttttgaaagtttatccgtaattaggcacttaaaaatcattaggcactttgaataattaaaat  8093600  Previous    Next  AGI:  At3g22860.1    Description:  TIF3C2 (eukaryotic translation initiation factor 3 subunit C2); translation initiation factor. similar to EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3) [Arabidopsis thaliana] (TAIR:AT3G56150.1); similar to putative translation-initiation factor 3 subunit [Prunus avium] (GB:AAL13083.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ82375.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ71906.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Eukaryotic translation initiation factor 3 subunit 8, C-terminal; (InterPro:IPR0089 Range:  from: 8090661    to: 8093146    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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