Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------GLK1(1)                                                  --------->GLK1(1)                                       <---------ARR14(3)                                --------->ANAC46 --------->ARR14(2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->LBD16                       --------->ANAC46--------->ARR14(3)          --------->ARR14(2)                       --------->ANAC58<---------GLK1(2)<---------At4g35610                       --------->ANAC58<---------ARR11(3)         <---------CCA1(2)                       <---------ANAC55(2)       <---------ARR14(2)<---------ARR14(2)                       --------->ANAC55(1) <-----------RAV1(1)  <---------ANAC58                       ----------->GT1 --------->ARR11(3)       <---------ANAC58 ---->TEIL             --------->ANAC55(2) <---------ANAC46    ---------->ID1         --------->At4g35610   aactcatgaaaatggggtctcaaacaagtaatacacctcaagattttgtgggatttgctgctcttgtcgtatccgagagcataagaatagctgtcgaatt  8048400                                                                                  <---------At4g35610                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            <---------ANAC58                                                                            <---------ANAC46                                                                            <---------ANAC58                                                                           xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     <------NtERF2                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         -------->ZAP1                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      ----------->HVH21                                   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->WRKY12                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------WOX13(1) <---------ARR14(2)              <---------ANAC58                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58                   --------->ATHB12 ------>NtERF2                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------PCF2 <----------TaMYB80                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------ZAT18 --------->ARR14(2)             ------->TEIL<---------ANAC46             <---------RAP2.3(3)    --------->ANAC46      ------->PIF5xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->ZAT18<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->ALFIN1 --------->LBD16          --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <-----------RAV1(1)<---------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ANAC46 <---------LBD16--------->ARR14(2)<-------PIF5xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------TGA1a<---------WRKY18(1) --------->ANAC55(2)<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------At4g35610--------->WRKY38(1)  <---------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-   tgttgaactgatgtgtgggctcgattgaccgggtatgcccccaatacgggttccaaaccacgagcctagtcttggcttgggtgatgctgatgcataacaa  8048500                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                           --------->YAB1                                                                                          --------->ICU4                                                                                        --------->YAB1                                                                                       <---------YAB1                                                                                     --------->YAB1                                                                                    <---------YAB1 <-                                                                                    --------->ICU4 --                                        ---------->ID1<-----------GT1             --------->YAB1 ----                        --------->CCA1(2)       <---------At4g35610               <XXXXXXXXXXXXXXXXXX            ---------->DOF2            <-----------HVH21                         --------->ICU4 -----         --------->At5g28300 --------->YAB1<------NtERF2 <----------DOF2         <---------YAB1 <----   <-----------HVH21   <---------ARR11(3) ------>NtERF2  --------->TOE2(3)<-----------GT1 <---------YAB1 ----------GT1         --------->ARR11(3)--------->DEAR3(1)        --------->ANAC55(2) --------->ICU4   taaaccgtcgcagtgaaagacttgagatatatcatcaacttcgtcgcctaagctaataactttagcttcacgttttatacatgatgatgatgatgatgat  8048600                                                           --------->YAB1 -->YAB1                                                   <---------ICU4                       <---- ->ICU4                                                   --------->ICU4                    <-------- --YAB1 ------->GAMYB                                     <---------YAB1                   --------->ATHB12 --------YAB1                                           --------->YAB1      ---------->DOF2<--------- ------->ICU4                                           <---------ICU4   ----------->GT1  <---------AHL20(2) ----->YAB1                                          --------->YAB1     --------->DAG2    --------->ICU4 XXMIR414               <---------WOX13(1)          <-------TEIL       ---------->DOF2    --------->AHL20(2) ---->ICU4           <---------YAB1         --------->TOE1(3)     ----------->RAV1(1)   --------->TOE2(3) -----YAB1         --------->YAB1           --------->TOE2(3)   --------->MYB46(3) ---------->DOF2---   gatgattcaacgacgttgttatcaagattgactctcatcaaataaaccctaaaattcatcatcatgaccaccataaagtaaagagtaaagcattaattgg  8048700                                                      <-----------TGA1                                                     ================================bZIP_DOF                                                     --------->TGA1a                                                     <---------O2                                                     <---------ANAC58                                                     <---------ANAC55(2)                                                     <<<<<<<<<<HY5                                                     --------->O2                                                     <---------TGA1a                                                     <---------ANAC58                                                     --------->TGA2(1)                                                     --------->bZIP60(2)                                                     <---------bZIP60(2)                                                     --------->ANAC46                                                     <---------TGA2(1)                                                     --------->ANAC55(2)                                                     --------->bZIP60(1)                                                     <---------bZIP60(1)                                                    <-----------STF1                                                    ----------->STF1                                                   <---------TGA2(2)                                             ==================bZIP_DOF                                             ---------->DOF2                                        --------->MYB52(1)                                       ========================MYC_MYB                --------->ATHB12 ------ID1                         <-----------RAV1(2)<-----------HVH21              <---------YAB1 ----CBF--------->MYB52(1)        <-----------------AGL1                      ----------->GT1 ---ATHB5                         <-------TEIL --------->ICU4   <---------MYB46(3) --------->CCA1(2) -------------->AGL1    <---------ZAT6 <--------P ----------->TGA1        ---------->DOF2   gccaaaaatgtaacgaatgggcctgagtgttataggtccaggtaagggaaagatgacgtcacttagtggatggactaaaagagtgatatgatttggactt  8048800                          ------>NtERF2                        <------NtERF2                          ------->GAMYB                        --------->ATERF1(1)                  -------->P                       ------>NtERF2                        ------->GAMYB                       <---------ATERF1(1)                 <---------MYB55(2)                      --------->DEAR3(1)                   <---------MYB111(2)                      <---------ANAC46                     --------->MYB46(3)                   --------->DEAR3(1)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         *TSS      <---------DEAR3(1)                <---------ETT(1)   --------->ZAT14 <-------PIF5                   --------->ARR14(2)   --------->ZAT18 ------->PIF5                   <---------ARR14(2)                           <-----   <---------ZAT18--------->DEAR3(2)             <---------GLK1(1)                  >>>>>>>>>>>>>>>>>LFY   catagttcacactgtttcgcaccggcgcggacaaagttttttttttgttcgaaatccgacaacaaccctagattataaacaaaataaaccagtgtctgca  8048900                                                                             ------->GAMYB                                                                           --------->At4g35610                                                                 ------>ZmHOX2a(2)                                                                <------ZmHOX2a(2)                                                     ==================HOX2a_HOX2a                                                     ------>ZmHOX2a(1)     <---------At4g35610                                                     ===================HOX2a_HOX2a                                          --------->HSFB2a(2)  <---------ARR14(2)                                          <---------HSFB2a(2)  --------->ARR14(2)  <---------ARR14(2)                        --------->HSFB2a(2)      <---------ARR14(2) <---------ARR14(2)   <---------ARR14(2)                        <---------HSFB2a(2)--------->LBD16<-----------------AGL1   --------->ARR14(2) ----AtLEC2      <---------YAB1 <----------ID1   --------->GLK1(2)  --------->ARR14(2)   --------->ARR14(2)   tagaggcaatgtagatgtgatttttgctggaaaatggacaaatcccagaagaatcctacttcccagatcggaacttcaactcccaaatccaaattcgagg  8049000                      --------->ZAT14                      <---------ZAT14      --------->ANAC58               ------>ZmHOX2a(1)  <---------MYB52(1)                                <---------LBD16              --------->TOE2(3) <---------ANAC58                          <---------ZAT14      ------>ZmHOX2a(1)      <----------DOF2 <---------ARR11(3)           --------->ZAT14     --------->TOE2(3)<---------ZAT18      --------->ANAC58          <---------ARR11(3)     --------->TOE1(3)--------->ZAT18<----------DOF2                 --------->ARR11(3)  <-----------GT1---------->DOF2<---------ANAC58      <---------AHL20(2) <---------ZAT6        <-----   tttttttccttaatttcctcaaagttcactcctttcgttctttacaagctctgcattttttttttgaagaagatagtgttctgttttctgggttttgctt  8049100                                                                                   ------------------                                                                                <---------ARR11(3)                                                                                --------->ARR11(3)                                                                            ---------->DOF2                                 ---------->ID1                        <-----------------AGL1                <---------ARR14(2)                                     ----------------->AGL1                --------->ARR14(2)                                   >>>>>>>>>>WRKY26           ================================RAV--------->ETT(2)       >>>>>>>>>>WRKY43         <----------DOF2  <---------AHL20(2)  <---------ETT(2)       >>>>>>>>>>WRKY38 -----DOF2 <-----------RAV1(2) <-----------RAV1(1)                  --------->WRKY38(1)       -------   catgtttctcgcttcagggttctgcgattttttttgttgttttttttgtcgacgaggtcaatttcatgaattgaccaaaaaaggtcttattttgtttcga  8049200               <----------DOF2       --------->ARR11(3)                        <---------ANAC58      <--------ATHB1                             <---------ANAC58      --------->YAB1                        <---------GLK1(1)                               <--------     --------->ICU4 ----------->GT1        --------->ARR14(2)                      --------->ARR14(2)     <---------ATHB12                      <---------ARR14(2)  <---------YAB1      <---------ARR14(2) --->WRI1    <---------------AGL15  <---------At4g35610      --------->YAB1        <---------GLK1(2) ---->GT1    ---------->ID1         --------->At4g35610  <---------YAB1           <------ZmHOX2a(1)   aaaatcaatgattttgtctttttggtaaaaacatttttagctgtggatttgccttgagtctaattgtaattggtctacaatgtaggattctccagtgttc  8049300  Previous    Next  AGI:  At3g22770.1    Description:  F-box family protein-related. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G19470.2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G19470.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABD33336.2); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 8047691    to: 8048674    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g22780.1    Description:  TSO1 (CHINESE FOR 'UGLY'); transcription factor. similar to tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71212.1); contains InterPro domain Tesmin/TSO1-like, CXC (InterPro:IPR005172) Range:  from: 8048809    to: 8052267    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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