Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------YAB1                                                        --------->ARR14(3)                                --------->ARR14(2)      <---------ARR14(3)                                <---------ARR14(2)      --------->ARR11(3)                             <---------MYB59            --------->GLK1(2)      ------>MYB83>>>>>>>>>TBF1                         <---------ETT(2)               --------->ARR14(2)     ------>MYB46(1)    <-- ->RAV1(2)      ----------->RAV1(2)    ---------->DOF2  <---------ARR11(3)   <---------MYB59      <--   acttgttgacgactaaacttctggctctcgacccaattcgccaaagaagggataacaaaatcttcatcatctttggaaaccgaactcgatgaagaagaag  8019300                                                  <------NtERF2                                                 --------->LBD16                                        --------->WRKY38(1)                                        ----------->HVH21                                       <---------MYB52(1)                                      --------->LBD16   --------->MYB52(1)                                      <---------At4g35610      --------->ATERF1(1)                                      --------->At4g35610    <---------DEAR3(1)                                    <---------LBD16   --------->MYB46(3)                                 <---------At4g35610  <---------MYB52(2)                                 --------->ZAT2<---------At4g35610     <---------ZAT14              <                                 --------->At4g35610----------->RAV1(1)--------->ZAT14             --                                 <---------ZAT2--------->At4g35610  ------>ZmHOX2a(1)              <-                              --------->At5g28300--------->RAP2.6(2)--------->At4g35610        ------          ---------->DOF2     <---------MYB52(1) ------>NtERF2<---------ATERF1(1)       --------->HSFB2a(2) -------ANAC58             --------->RAP2.6(3) <---------LBD16------>NtERF2<---------ZAT6--------->ANAC46 -------ANAC58  <----------DOF2<--------P    ---------->CDC5 --------->DEAR3(1)         <---------HSFB2a(2)   gcttgtttgatagaaagtctttaatccaagacggtagctccggtgactctgcggcaacaatcggcgactcctctgcagtgttattcgttaccagaaacct  8019400                    --------->DAG2        --------->GLK1(2)       --------->ARR14(2)       <---------ARR11(3)       <---------GLK1(2)       --------->ARR11(3)       <---------ARR14(2)      <---------HSFC1(2)      --------->HSFC1(2)--------->ARR14(2)      <---------HSFB2a(1)  --------->ANAC46      --------->HSFB2a(1)  --------->ANAC58                                         --------->ANAC46     ----------->ARR10  <---------ARR14(2)                                   ------->TEIL ---------MYB52(1) ---------->DOF2                       <---------ZAT18<---------MYB52(1) ------------------->WRI1  --------->ANAC58    ------>ZmHOX2a(1)      <---------ANAC58 ------GAMYB  --------->LBD16                 --------->TOE2(3)       <---------ANAC58             -- --->TOE2(2) <---------TOE1(1)               --------->YAB1           <---------ANAC46             ==   ccgttggaagattctccgaggtaaagtatacgaaacaagcttactaatcctaagcttagtgagcattttgttccgtttgaatctaaacgcagacttctct  8019500                                                                    ----------->GT1                                                                    <---------MYB46(3)                                                                  <---------MYB52(1)                                                                <---------DEAR3(2)                                                                <------MYB83                                                                <------MYB46(1)                                                                <---------MYB46(3)                                                               <---------DEAR3(1)                                                           <---------DEAR3(2)                                                           <---------MYB46(3)                                                          --------->ETT(1)                                                        --------->ARR14(2) <---------------AtSPL8                        <----------DOF2                 <-----------HVH21<------------CBF                     <---------ARR14(2)                 <---------ARR14(2) --------------->AtSPL8                     <---------ARR11(1)              <---------ANAC58   --------->ATHB12                     ------->TEIL                    <---------ANAC58 <---------MYB52(1)                     --------->ARR14(2)              <---------ANAC46--------->TOE2(3)              <                     --------->GLK1(2)        <----------DOF2 <--------P--------->MYB52(2)      <----            ---------->DOF2              <---------At4g35610 <-----------HVH21                  -----          <------ZmHOX2a(2)       ---------->DOF2   ----------------->AGL1<---------WOX13(1)   ------    <-----------GT1 <---------ARR14(1)<---------ANAC58------>NtERF2 --------->MYB52(2)--------->LBD16 ---->ZmHOX2a(1)    <---------CCA1(2) <---------ANAC58--------->LBD16<-------GAMYB   <---------LBD16- ================HOX2a_HOX2a    <---------MYB59     <---------LBD16<-------TEIL     ------->GAMYB   <   cctgtttttccgatcaaagttcgaatcttttagacctaaagcttgctgctttgtgccgggtcgggtcggttcgttaattggtacaaccccggttcgattt  8019600                                                                      --------->ANAC58                                                                      --------->ANAC46                                                                 --------->REM1(2)                                                               ------->MYC3                                                               <-------MYC2                                            ----------->HVH21  ------->MYC2                                          <---------O2         <-------MYC4         <---------ANAC58                 --------->O2         ------->MYC4         <---------ANAC46                 --------->TGA1a      <-------MYC3         <---------ANAC58                 --------->ANAC55(2) --------->TGA1a      <-----------GT1                ----------->HVH21        <---------TGA1a --------->AHL20(2)              --------->TGA1a              <--------ABF1 <---------AHL20(2)            <---------ALFIN1               <---------O2 ---------AHL20(1)            --------->ANAC46                <---------ANAC55(2) -----AHL20(2)  <---------ARR11(3) <---------At4g35610        --------->ANAC55(2) ---->AHL20(2)  --------->ARR11(3) --------->At4g35610   ----------->HVH21 --->AHL20(2)   <---------GLK1(2)<---------ALFIN1     <-----------GT1 --------->ANAC58 -------->AHL20(2)          --------->ANAC46----------->TGA1  <---------ANAC46               ------>ZmHOX2a(1) ---------AHL20(2)        <-----------GT1 <---------ANAC55(2) --------->O2          ---------->ID1   aatttaatttagcgtttagatttttggtttaccccacatctgacaagtgacgatttttactgacacgtgtacaagtcattctcttcgtcttcttcctcta  8019700                                                                       >>>>>>>>>MYB1                                                                  <-----------ARR10                                                                  --------->GLK1(2)                                                             <------NtERF2               *TSS                                         ------>NtERF2               <---------ARR14(2)                          --------->RAP2.3(3)               --------->ARR14(2)          <----------DOF2 --------->RAP2.3(2)              ---------              <------ZmHOX2a(1)         <---------TOE1(2)  --------->RAP2.6(2)     ----------->HVH21            <---------TOE2(3)           ------->TEIL     ------>NtERF2 >>>>>>>>>MYB2     --------->ANAC58            <---------TOE1(3)       --------------->AtSPL8 --------->DEAR3(1)----------->HVH21         <---------AHL20(2) <---------WRKY38(1)   <----------DOF2 <---------ARR11(3)     --------->AtLEC2  --------->TOE1(3)         <---------WRKY12    <---------At4g35610   --------->MYB52(1) --------->ANAC58  --------->TOE2(3)     <---------AtMYB61 <---------DAG2--------->ANAC46     --------->ETT(2)   aaaaccctaattttaaggaacctcgtgtggtcatcgtcttcgtacctttctgctttctacgccgtcaaaatctaactgctcgacagtgaccatgcaaagc  8019800                                            <---------ANAC46                                            --------->O2                                            <---------O2                                            <---------TGA1a                                            --------->bZIP60(1)                                          <---------TGA2(2)                                         ----------->HVH21                                       <---------At4g35610                                         <-                                       --------->At4g35610                                        ---                                 --------->LBD16                     <----------DOF2              ---                               <---------LBD16         ----------->ARR10                          <--                             <---------ARR14(2)    --------->At4g35610    <---------At5g28300     <--                        <---------At4g35610 <---------bZIP60(1)      ================================                        --------->ANAC55(2) <---------bZIP60(2)     <---------ANAC58              ---                        <---------ANAC55(2) --------->TGA1a         <---------ANAC58--------->HSFC1(2)                        --------->At4g35610 ====================================bZIP_DOF          <--                      <-----------RAV1(2)----------->TGA1--------->ARR11(3)         <---------HSFC1(2)  --------->YAB1    <-----------HVH21  ----------->RAV1(2)<------ZmHOX2a(2) --------->DEAR3(1)    --- ->DOF2            --------->AtMYB61<-------TEIL   <---------At4g35610   <-----------GT1          <--   tcaatgacaatggaactacgaccatcaggtgattccggttcatctgacgtcgatgctgagatcagcgatggcttttcaccgctcgatacttctcacagag  8019900          --------------->AtSPL8       <---------REM1(1)     --------->At4g35610  <---------At4g35610 <---------DEAR3(1) ----------HVH21 ------>bZIP60(2) ------>TGA1a <-------TEIL -------bZIP60(1)                                 <-----------GT1 -------O2<---------------AtSPL8        <----------DOF2 =======bZIP_DOF                       <---------ANAC58 ------>bZIP60(1)                      <---------ANAC58 -------TGA1a--------->CCA1(2)       <-----------GT1                           <-----------GT1    --- ------>O2<---------TOE2(3)      <---------MYB52(1)       <---------YAB1    <---------ICU4        --- -------bZIP60(2)            --------->PCF5  <----------DOF2            <---------YAB1            <--   acgtcgctgatgaaggtacacgatttcaatggtcccttgtttctttcctttctcaccattttgattcaaaagttttgatttttacaaaaatgctctgaaa  8020000              <-------GAMYB                                    ------>MYB83             <---------MYB46(3)                                ------>MYB46(1)             --------->MYB52(2)                               --------->WOX13(1)           <---------ANAC46            <-------TEIL                                --------->ANAC58        <---------ANAC58        --------->MYB59                                <---------------AtSPL8   <---------ANAC58       <-----------RAV1(2) --------->At4g35610      --------->ANAC58            <---------ANAC46    < ------>AHL20(1)  <---------ANAC46                  --------->ANAC58     ------->TEIL      <---------ANAC58 ------>AHL20(2) <---------At4g35610      --------->ZAT6--------->ANAC58 <---------ARR14(2)<---------ANAC58 -------AHL20(2) --------->At4g35610 ------->TEIL ---------->DOF2   ------>NtERF2  <-------GAMYB    -   ttttttgagtcaggttcgttgctgagaagagcagagatgtatcaagactacatgaagcaagtaccaatcccgacgaatcgtggctcgttgattccgttca  8020100                                                                 --------->KAN4(2)                                                                <---------KAN4(1)                                                                --------->KAN4(1)                                                                <---------HSFB2a(1)                                                                --------->HSFB2a(1)                                                                --------->HSFC1(2)               ----                                                                <---------HSFC1(2)               ----        <------MYB83                                           <---------KAN4(2)              <------        <------MYB46(1)                                     --------->ANAC58                  -------      <--------P                                            --------->ANAC58                <--------     <---------ANAC46                                     --------->MYB52(1)              --------->YAB1     <-------GAMYB               <---------DAG2      <-----------GT1                     <---------ATHB12 ---------ZAT2          <---------ATHB12   <---------At4g35610 ------->TEIL            --------->WOX13(1) -------->ZAT2  <---------ICU4   <----------DOF2  --------->REM1(1)                  <------ZmHOX2a(2)   caagctgggttggattaagcatttcaatgaaacagctttatggtcagcctctacattacctcacgaatgttctcttacaacgatgggatcaatcacgatt  8020200  Previous    Next  AGI:  At3g22670.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G04130.2); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G04130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71207.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8017778    to: 8019466    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g22680.1    Description:  Identical to Uncharacterized protein At3g22680 [Arabidopsis Thaliana] (GB:Q9LUJ3;GB:Q84MD0); similar to unnamed protein product [Vitis vinifera] (GB:CAO71208.1); similar to Os06g0630300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058122.1); contains InterPro domain Protein of unknown function DUF1950 (InterPro:IPR015270) Range:  from: 8019715    to: 8020515    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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