Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------ICU4                              --------->YAB1              <---------MYB52(1)             --------->LBD16 --------->MYB46(3)            --------->ANAC58 <---------ATHB12                                  --------->AtMYB61            --------->ANAC46------>MYB83                                    ------->GAMYB            --------->ANAC58------>MYB46(1)                                 --------->AtMYB61            <---------ANAC55(2)                                ------>MYB46(1) <---------ALFIN1 ------------->AGL1         -------->P                         ------>MYB83<---------MYB55(2)       < -ARR14(2)  --------->ANAC55(1)                              <---------MYB59--------->ANAC46--------- >ARR14(2)  --------->ANAC55(2)                  --------->ARR11(3)        --------->MYB46(3)       =   cccaaatgaaaaacccgtaagcttgattccaaccattactaaaccttcttagaacttgcaaaaccaaactctctgtaaccaccacatcgcatttactcaa  8019100                     <---------ANAC58                     <---------ANAC55(2)                     <---------bZIP60(2)                     =============================bZIP_DOF                     <---------ANAC46                     --------->ANAC55(2)                        >>>>>>>>>>>>>>>>>LFY                     <---------ANAC55(1)                        <<<<<<<<<<<<<<<<<LFY                     <---------ANAC58                       <---------ARR14(2)                     --------->O2                           --------->ARR14(2)                     <---------TGA1a                        --------->ARR14(3)                     =============================bZIP_DOF  <---------ARR11(3)                     --------->TGA1a                        <---------ARR14(3)             ------>ZmHOX2a(1) <---------YAB1      <----------DOF2 ----------DOF2      <---------O2       --------->DAG2      --------->ARR11(3) >ANAC46 <---------ARR11(3) ------>ZmHOX2a(1)      <---------DAG2 ==============================bZIP_DOF---------->DOF2 <---------YAB1                      ----------   ctctttaacaacatcctcatgagacgtgtccttcttattcaaaaagtcgcaaactttatcaatatcttccactggtttcttcactacatttccctctgag  8019200                                                                  <---------YAB1                                                        --------->ARR11(3)                                --------->ARR14(2)      --------->GLK1(2)                                <---------ARR14(2)      --------->ARR14(3)                             <---------MYB59            <---------ARR14(3)     ------>MYB83>>>>>>>>>TBF1                         <---------ETT(2)               --------->ARR14(2)     ------>MYB46(1)    <-- ->RAV1(2)      ----------->RAV1(2)    ---------->DOF2  <---------ARR11(3)   <---------MYB59      <--   acttgttgacgactaaacttctggctctcgacccaattcgccaaagaagggataacaaaatcttcatcatctttggaaaccgaactcgatgaagaagaag  8019300                                                  <------NtERF2                                                 ------>NtERF2                                        --------->WRKY38(1)                                        ----------->HVH21                                       <---------MYB52(1)      --------->ATERF1(1)                                      <---------At4g35610     <---------ATERF1(1)                                      --------->LBD16   --------->MYB52(1)                                      --------->At4g35610    <---------DEAR3(1)                                    <---------LBD16   <---------MYB52(2)                                 <---------At4g35610  --------->MYB46(3)                                 --------->At4g35610----------->RAV1(1)                             <                                 --------->ZAT2--------->At4g35610     --------->ZAT14             <-                                 <---------ZAT2<---------At4g35610     <---------ZAT14             --                              --------->At5g28300--------->RAP2.6(2)------>ZmHOX2a(1)          ------          ---------->DOF2     <---------MYB52(1) --------->LBD16    --------->At4g35610 --------->HSFB2a(2) -------ANAC58             --------->RAP2.6(3) <---------LBD16------>NtERF2<---------ZAT6--------->ANAC46 -------ANAC58  <----------DOF2<--------P    ---------->CDC5 --------->DEAR3(1)         <---------HSFB2a(2)   gcttgtttgatagaaagtctttaatccaagacggtagctccggtgactctgcggcaacaatcggcgactcctctgcagtgttattcgttaccagaaacct  8019400                    --------->DAG2        --------->GLK1(2)       --------->ARR14(2)       <---------ARR14(2)       <---------GLK1(2)       <---------ARR11(3)       --------->ARR11(3)      <---------HSFC1(2)      <---------HSFB2a(1)  --------->ANAC46      --------->HSFB2a(1)  --------->ANAC58      --------->HSFC1(2)<---------ARR14(2)                                          --------->ANAC46     ----------->ARR10  --------->ARR14(2)                                   ------->TEIL ---------MYB52(1) ---------->DOF2                       <---------ZAT18<---------MYB52(1) ------GAMYB  --------->LBD16                  ------>ZmHOX2a(1)      <---------ANAC46 ------------------->WRI1  --------->ANAC58   --------->TOE2(3)       <---------ANAC58             -- --->TOE2(2) <---------TOE1(1)               --------->YAB1           <---------ANAC58             ==   ccgttggaagattctccgaggtaaagtatacgaaacaagcttactaatcctaagcttagtgagcattttgttccgtttgaatctaaacgcagacttctct  8019500                                                                    <---------MYB46(3)                                                                    ----------->GT1                                                                  <---------MYB52(1)                                                                <---------DEAR3(2)                                                                <------MYB46(1)                                                                <------MYB83                                                                <---------MYB46(3)                                                               <---------DEAR3(1)                                                           <---------MYB46(3)                                                           <---------DEAR3(2)                                                          --------->ETT(1)                                                        --------->ARR14(2) <---------------AtSPL8                        <----------DOF2                 <---------ARR14(2) --------------->AtSPL8                     <---------ARR11(1)                 <-----------HVH21<------------CBF                     <---------ARR14(2)              <---------ANAC46   --------->ATHB12                     ------->TEIL                    <---------ANAC58 <---------MYB52(1)                     --------->GLK1(2)               <---------ANAC58<-------GAMYB                  <                     --------->ARR14(2)       <----------DOF2 <--------P--------->MYB52(2)      -----            ---------->DOF2              <---------At4g35610 <-----------HVH21       <---------LBD16-          <------ZmHOX2a(2)       ---------->DOF2   ----------------->AGL1<---------WOX13(1)    <----    <-----------GT1 <---------CCA1(2) <---------ANAC58--------->LBD16--------->TOE2(3)         ------ ---->ZmHOX2a(1)    <---------ARR14(1)<---------ANAC58------>NtERF2 --------->MYB52(2)--------->LBD16 ================HOX2a_HOX2a    <---------MYB59     <---------LBD16<-------TEIL     ------->GAMYB   <   cctgtttttccgatcaaagttcgaatcttttagacctaaagcttgctgctttgtgccgggtcgggtcggttcgttaattggtacaaccccggttcgattt  8019600                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                 --------->REM1(2)                                                               <-------MYC3                                                               ------->MYC4                                            ----------->TGA1   ------->MYC3                                          --------->TGA1a      <-------MYC2         <---------ANAC46                 --------->O2         ------->MYC2         <---------ANAC58                 <---------ANAC55(2)  <-------MYC4         <---------ANAC58                 <---------O2        --------->ANAC55(2)      <-----------GT1                ----------->HVH21        --------->O2 <---------AHL20(2)              <---------ALFIN1             --------->TGA1a --------->AHL20(2)            <---------ALFIN1               <--------ABF1 ---------AHL20(1)            --------->ANAC46                <---------O2 ---->AHL20(2)  --------->ARR11(3) <---------At4g35610        <---------TGA1a -------->AHL20(2)          --------->ANAC46----------->HVH21 <---------ANAC55(2) -----AHL20(2)  <---------GLK1(2)--------->TGA1a         ----------->HVH21 --->AHL20(2)   <---------ARR11(3) --------->At4g35610<-----------GT1 --------->ANAC46       ------>ZmHOX2a(1) ---------AHL20(2)        <-----------GT1 --------->ANAC55(2) <---------ANAC46      ---------->ID1   aatttaatttagcgtttagatttttggtttaccccacatctgacaagtgacgatttttactgacacgtgtacaagtcattctcttcgtcttcttcctcta  8019700                                                                       >>>>>>>>>MYB1                                                                  <-----------ARR10                                                                  --------->GLK1(2)                                                             <------NtERF2               <---------ARR14(2)                           ------>NtERF2               --------->ARR14(2)                          --------->RAP2.3(2)               *TSS                        <----------DOF2 --------->RAP2.3(3)              ---------              <------ZmHOX2a(1)         <---------TOE1(2)  --------->DEAR3(1)----------->HVH21            <---------TOE2(3)           ------->TEIL     ------>NtERF2 >>>>>>>>>MYB2     --------->ANAC58            <---------TOE1(3)       --------------->AtSPL8 --------->RAP2.6(2)     ----------->HVH21         <---------AHL20(2) <---------WRKY12      <----------DOF2 <---------ARR11(3)     --------->AtLEC2  --------->TOE1(3)         <---------WRKY38(1) <---------At4g35610   --------->MYB52(1) --------->ANAC58  --------->TOE2(3)     <---------AtMYB61 <---------DAG2--------->ANAC46     --------->ETT(2)   aaaaccctaattttaaggaacctcgtgtggtcatcgtcttcgtacctttctgctttctacgccgtcaaaatctaactgctcgacagtgaccatgcaaagc  8019800                                            <---------bZIP60(2)                                            ====================================bZIP_DOF                                            <---------bZIP60(1)                                            <---------ANAC46                                            --------->bZIP60(1)                                          <---------TGA2(2)                                         ----------->TGA1                                       ----------->RAV1(2)                                         <-                                       --------->At4g35610                                        <--                                 --------->LBD16                                                  ---                               <---------LBD16         ----------->ARR10                          ---                             <---------ARR14(2)    <---------At4g35610    <---------At5g28300     <--                        <---------ANAC55(2) --------->O2             <----------DOF2              ---                        --------->ANAC55(2) <---------O2 --------->ARR11(3)                       ---                        --------->At4g35610 <---------TGA1a          ================================                        <---------At4g35610 --------->TGA1a         <---------ANAC58--------->HSFC1(2)                      <-----------RAV1(2)----------->HVH21          <---------ANAC58<---------HSFC1(2)  --------->YAB1    <-----------HVH21  <---------At4g35610<------ZmHOX2a(2) --------->DEAR3(1)    <-- ->DOF2            --------->AtMYB61<-------TEIL   --------->At4g35610   <-----------GT1          <--   tcaatgacaatggaactacgaccatcaggtgattccggttcatctgacgtcgatgctgagatcagcgatggcttttcaccgctcgatacttctcacagag  8019900          <---------------AtSPL8       <---------REM1(1)     --------->At4g35610  <---------At4g35610 <---------DEAR3(1) ----------HVH21 -------O2<---------TOE2(3) ------>TGA1a <-------TEIL ------>O2--------------->AtSPL8                  <-----------GT1 -------TGA1a--------->CCA1(2)          <----------DOF2 ------>bZIP60(1)                      <---------ANAC58 ------>bZIP60(2)                      <---------ANAC58 =======bZIP_DOF                     <-----------GT1                           <-----------GT1    <-- -------bZIP60(2)                <---------MYB52(1)       <---------YAB1    <---------ICU4        --- -------bZIP60(1)            --------->PCF5  <----------DOF2            <---------YAB1            ---   acgtcgctgatgaaggtacacgatttcaatggtcccttgtttctttcctttctcaccattttgattcaaaagttttgatttttacaaaaatgctctgaaa  8020000  Previous    Next  AGI:  At3g22670.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G04130.2); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G04130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71207.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8017778    to: 8019466    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g22680.1    Description:  Identical to Uncharacterized protein At3g22680 [Arabidopsis Thaliana] (GB:Q9LUJ3;GB:Q84MD0); similar to unnamed protein product [Vitis vinifera] (GB:CAO71208.1); similar to Os06g0630300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058122.1); contains InterPro domain Protein of unknown function DUF1950 (InterPro:IPR015270) Range:  from: 8019715    to: 8020515    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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