Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            ------->GAMYB                                                       --------->MYB52(1)                                                 <---------MYB52(1)                                                 <-------GAMYB                                                 <------NtERF2                                                <---------DEAR3(2)                                                <---------MYB46(3)                                               <---------DEAR3(1)                                              <------NtERF2                 <---------At4g35610         <---------RAP2.3(1)                 --------->At4g35610        <---------RAP2.3(2)                 <---------ZAT2             <---------DEAR3(1)    ---------->DOF2     --------->LBD16     --------->DEAR3(1)  ------>ZmHOX2a(1)     ------>NtERF2      --------->At4g35610  <---------------AGL15--------->ANAC46    <---------At4g35610                                      - --------->TOE2(3)    <---------LBD16   --------->At4g35610                                         - ---->MYB83      --------->ZAT2         --------->ZAT2<---------WRKY38(1)                      <----- ---->MYB46(1) <---------ZAT18          <------NtERF2 <---------WRKY45                         ------ ------MYB59  <---------ANAC58          <---------ZAT2<---------WRKY12                    <---------GLK1(2) -ARR10       <---------ANAC58          <---------At4g35610  --------->GLK1(1)       <------ZmHOX2a(1)   cttcctcaaagcagtagcgagctctccgcgagtgaaattggcagcagcggcggtagtcaacgggattccatttctgaatttgtacaaggacacattcttc  8010500           <---------ZAT14           --------->ZAT14          <---------MYB52(1)         --------->LBD16        <---------ANAC55(2)                         <---------ICU4        <---------ANAC46            <---------ARR14(2)       <---------LBD16              --------->ARR14(2)    --------->SPL7         --------->WOX13(1)      --------->ICU4 -------------->AtSPL3    <---------ICU4         --------->YAB1 --------->AtMYB61 ------>TEIL             <---------ATHB12     ----------->GT1   <---------ALFIN1 ----At4g35610      --------->TOE2(3)   --------->LBD16      --------->AtMYB61 --->At4g35610    ------->TEIL      --------->GLK1(2)  <-----------GT1          --------->AGP1   tgaacgtactccgtaaactgaaccctaatcaatcccaaaatccgaagacagtcaaaattactacctccaccgctaaattacagagctacagagagagaga  8010600                  <---------At5g28300                  --------->MYB52(1)                 <-----------GT1                        <---------ANAC58            <------ZmHOX2a(1)    --------->ANAC58       <---------ANAC58           ----------->GT1       --------->ANAC58       <---------ANAC46    ------>ZmHOX2a(2)         <------ZmHOX2a(1)       --------->ANAC46   <---------ANAC58        =========================  <---------ARR14(2)    <---------WRKY38(1)         <---------ANAC58      <---------ARR11(3)  --------->MYB52(1)   ----------->HVH21      ----------->RAV1(1)         --------->ARR11(3)  --------->GLK1(2)   <-----------HVH21     --------->At4g35610  --------->ANAC58     ---------->ID1  --------->ARR14(2) --------->ANAC46      --------->ANAC46      --------->ANAC58     <---------MYB52(1)   agagtatcggaggaggaaattaccggtcaccaggctcgccactagcagcaacaagcttgtgtgagtcaagtaccatgatcttgtcttcgttgtttttgtg  8010700                                                                                                 <---                                                                                               ------                                                                                             ------>ZmHOX2a(2)                                                                                             <-------                                                                                            <------ZmHOX2a(2)                                                                                            ---------                                                                                            ---------                                                                                           <---------GLK1(2)               --------->DEAR3(1)           <---------ARR14(2)                    <---------ANAC58               ------->GAMYB                --------->GLK1(2)                     <---------ANAC58              --------->DEAR3(2)            --------->ARR14(2)                    <---------ANAC46<--              --------->MYB46(3)         <---------ANAC58               --------->ANAC58   <---------ARR14(2)             ------->TEIL      --------->At4g35610                      --------->ANAC46   --------->AGP1    --------->ARR14(2)        --------->RAP2.6(2)                       --------->ANAC58   --------->ARR11(1)    <---------ARR14(2)      <---------At4g35610                       <---------ALFIN1     --------->ARR11(3)   <------ZmHOX2a(1)        --------->At4g35610                       --------->ANAC46     --------->ARR14(2)  ----------->GT1 --------->DEAR3(1)     <---------ANAC58        <---------ARR14(2)  <---------ETT(2) =========HOX2a_HOX2a   ------->TEIL  <---------DEAR3(1)         --------->ARR14(2)  --------->ETT(2)   aagaaggatactatgaaccgccgatgtatcagcagcaacgatggcgaatccattcccaacaagaccgaatacacactccatcttccgtctacagatccgg  8010800                                                                                 ----------->GT1                           <---------ANAC46                                  <------------CBF ------ANAC46        --------->DAG2                                        <---------YAB1           < --->LBD16          ---------->DOF2                            --------->LBD16   <---------ANAC46   < --LBD16          <---------AHL20(2)             <---------MYB52(1)      ============================ >ARR14(1)       --------->AHL20(2)   --------->ANAC58        <---------ANAC46<---------WOX13(1)  --- >CCA1(2)       <---------YAB1        --------->ANAC58<-----------GT1    <------ZmHOX2a(1)      ----- -----GAMYB<---------At4g35610 --------->HSFB2a(2) *TSS      <---------LBD16--------->ATHB12    <----   cgttgtgagagagagcttattaaaaagcgtcttggagaacaagccttgttcgttttttactcttacggagaagaaggatgattgggtaaattccacatga  8010900  --------->LBD16 ---------LBD16                          <---------ANAC58 -----------RAV1(2)      --------->AHL20(2) ====HOX2a_HOX2a    --------->At4g35610  <---------ANAC46 --->ZmHOX2a(2)     ----------->GT1      <---------ANAC58                    <---------YAB1         < ---->ARR11(3)     --------->ANAC58      <---------AtLEC2              --------->AHL20(2)    <------- -----ARR11(3)     --------->ANAC58  <------------CBF<----------DOF2------------>ATHB5<---------AtMYB61   tctcaggggtattttagacataagctaaaaaatacgagctattgcatgaaatgggcttttgttataaggcccatttattgtcattgttttggttttaact  8011000                                                           ---------->DOF2                                                    ------>MYB46(1)                                                    -------->P                                                    --------->MYB52(1)                                                    ------>MYB83                                                  <---------MYB59           <---------WRKY18(1)                                                  --------->TOE1(2)      <---------ANAC58  <------MYB83                                    --------->TOE2(2)      <---------ANAC58  <---------DEAR3(2)                        --------->ANAC46           <------MYB46(1)  <------MYB46(1) <---------ARR11(3)       <---------HSFB2a(2)      <-------GAMYB  <---------MYB46(3)                     -------->P--------->MYB55(1)  <------MYB83                 < <---------DEAR3(1)        <---------ANAC46--------->HSFB2a(2) --------->ALFIN1                     < ---------ORA47(1)--------->ARR11(3)<---------MYB52(1)    <---------WRKY38(1)              --------->At4g35610 ----GT1        ----------->ARR10  <-------GAMYB  <---------MYB111(1)<--------P<----------DOF2     <-   tggtcggtttgatgagattagatattgtgatgtataccgttgctaccagaaacctaccagtcaaagttggggttggcttgactttgtgtcattagctaaa  8011100                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                                                                                        --------->CCA1(1)                                                                                        <---------CCA1(1)                                                                                        --------->RVE1(1)                                                                                  --------->AtLEC2 <---------LBD16                                                        --------->ARR14(2) --------->LBD16                                                  --------->AtMYB61     --------->GLK1(1) <---------HSFB2a(2)                                             --------->MYB46(3)     <---------RVE1(1) --------->HSFB2a(2)                                 <---------TOE1(3)  <---------ARR14(2)       ---- ---------LBD16                                      <---------TOE2(3) ------>MYB46(1) <---------ARR11(3) ---------ANAC46              <----------DOF2       ---------->DOF2    ------>MYB83    --------->ARR11(3) --------LBD16     ---------->DOF2---------->DOF2  <---------AHL20(2)<---------MYB111(1)<---------GLK1(1)   ctccggggaggcttatttggacaaagaaggctctttgaaagtagaagtcgaatttaaagttgtttctaccaccaaatactctccatgaagatatcttcaa  8011200                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(3)                                                                              --------->AHL20(2)                      <---------STY1(2)                                       <---------AHL20(2)                  --------->ZAT2                                             --------->AHL20(2)                  <---------At4g35610   ------>ZmHOX2a(1)                    <---------AHL20(1)                  --------->At4g35610---------->ID1----------->GT1           <---------AHL20(2)            --------->ICU4     <---------DAG2  --------->ARR11(3)        --------->AHL20(2)<---------GLK1(2)          --------->YAB1       <----------DOF2 <---------AHL20(1)        <---------AHL20(2)--------->ARR11(3)         <---------YAB1     <-----------GT1 --------->AHL20(2)     <---------ANAC58        <---------ARR11(3)  <---------MYB52(1)  --------->STY1(2) <----------DOF2         <----------DOF2            <---------ARR14(3) ----->ANAC46<---------ICU4 <---------AHL20(2) --------->AHL20(1)  <---------ANAC58      ----------->ARR10   caccattagttttcattatcagctagctatttacttttggtcctttttatatattgtttattaagactttcgtttttaatttttttatgtgaagattttg  8011300                                                                                                   <-                                                                                                   --                                                            <---------ARR11(3)                     --                                                            <-----------ARR10                  ------                                                            --------->ARR14(3)                 <-----                                                            --------->GLK1(2)                 -------                                                            <---------ARR14(3)                <------                                --------->TOE1(3)           --------->ARR11(3)                -------                  <---------TOE2(3)                ----------->GT1                            -------                  <---------TOE1(3)            <---------TOE2(3)                              <------            --------->ATHB12    --------->TOE2(3)<------ZmHOX2a(1)            ----------->RAV1(2)  --          <---------WOX13(1)   ----------->GT1 <---------TOE1(3)  <----------DOF2         ---------->DOF2  --------->AHL20(2)   --------->ATHB12 ---------->DOF2     --------->ARR14(2)<---------At4g35610<---   agaaaaaaatggattgatttgaggtttattgcatcgttaaataaaagttaaggaagtaacaaaatcttctttttttgttcacctgtttgtcgaaaagatc  8011400  Previous    Next  AGI:  At3g22630.1    Description:  PBD1 (PROTEASOME SUBUNIT PRGB); peptidase. Identical to Proteasome subunit beta type-2-A (PBD1) [Arabidopsis Thaliana] (GB:O23714); similar to PBD2 (20S PROTEASOME BETA SUBUNIT 2), peptidase [Arabidopsis thaliana] (TAIR:AT4G14800.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96308.1); contains InterPro domain Proteasome, beta-type subunit, conserved site (InterPro:IPR016050); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) Range:  from: 8009547    to: 8010851    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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