Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                            ------->GAMYB                                                                     <---------ATHB12      --------->MYB46(3)  --------->YAB1                                              --------->ZAT6             ----------->RAV1(1) --------ICU4                                               ------>MYB83             --------->HSFB2a(2) ------>ICU4                                                ------>MYB46(1)          <---------HSFB2a(2) -------YAB1         --------->AtLEC2                     <---------MYB59       <---------ANAC58   -- ---->YAB1       <-----------HVH21                 --------->HSFB2a(2)          <---------ANAC58  --- ----YAB1       --------->ANAC46                   <---------HSFB2a(2)--------->YAB1 >>>>>>>ZML2  <--   ataatggtcatagtatacatgtcatgctcaatcccattcaactccattcccttgcagaaacctaacactaaatcatactgtttcgttctagcaacagcac  7967700                                 ====================================HOX2a_HOX2a                                 <------ZmHOX2a(1)                             ---------->DOF2                             --------->TOE2(3)                          <------MYB83                                  --------->ATHB12                          <------MYB46(1)                               <---------ICU4   --------->GLK1(2)     --------->MYB111(1)                 <---------ARR11(3) ->ZAT18                 --------->MYB59           --------->ARR14(2)   <--------HAHB4 ------->ANAC46          --------->MYB46(2)        <---------ARR14(2)  <---------YAB1     --------->MYB46(3) ------>ZAT14           <--------P            --------->YAB1 --------->ARR11(3)--------->TOE1(3) -------ZAT14   --------->ATHB12<----------ID1--------->ATHB12<------ZmHOX2a(2)--------->TOE2(3)   tacacaatctattgaaatcgattggagtaggtaaaggacgagattgaatcatggattcgaagagatcaatagcatcattaaccttaatatcaacaatccc  7967800                                                                            --------->ARR14(2)                                                           <---------------AtSPL3                                                           --------------->AtSPL3                                                           --------------->AtSPL8                                                       ---------->DOF2      <---------ARR14(2)                       <---------HSFC1(2)        <---------ZAT6   <----------DOF2               <----            <----------DOF2     <---------DEAR3(1)    --------->ICU4        --------->GLK1(2)   <----  ------>ZmHOX2a(1)    <---------HSFB2a(1)       ----------->GT1 <---------DAG2               ------- --------->TOE1(3)     --------->HSFC1(2)      ----------->GT1 ------->TEIL<---------GLK1(2)  <------ --------->TOE2(3)  ---------->DOF2         --------->YAB1 <---------------AtSPL8   ---------->DOF2   attccttaatctctctttataagaaagcttcgcttcggtgatactagaatagtgtaataaagaagtacctttctcaagaatctgagtaaagttcgaagct  7967900                                                             --------->ZAT14                                                             <---------At4g35610                                                        ------>ZmHOX2a(1)                                                   <------MYB46(1)<-----------HVH21                                                   <------MYB83  <---------ANAC46                  --                                                  <---------TOE1(2)                               --- --------------->AGL15                           <---------MYB52(1)                           ------- -----DAG2<------ZmHOX2a(1)                    --------->ATHB12  --------->ALFIN1            -------- ------DOF2                           <---------ATHB12  <----------DOF2       ----------------------- -->HSFC1(2)              --------->YAB1     ------->TEIL    <---------ZAT14<xxxxxxxxxxxxxxxxsmallRNA(s) ---HSFC1(2)   --------->WOX13(1)   --------------------->WRI1 <---------ANAC46    >>>>>>>>>TBF1 *TSS   tttcgatttagaggaatcaatctctgtatcatcttcttcaatgaatgaatcgttggtcctttgtgctgtgtgagagagaagagaagaagaaggaaatgaa  7968000                                                                                               ------                                                                                --------->CCA1(2)                                                                               --------->TOE1(2) ----                                                                             <---------------AtSPL8                                   ------------>CBF                          <---------------AtSPL3   --------->LBD16            <---------LBD16                                --------------->AtSPL3 <---------LBD16     <---------AHL20(2)                              <------------CBF          ------ ------->GLK1(2)    <---------AHL20(1)                              --------->ATHB12           ------ ------>KAN4(2)    <---------CCA1(2)                     ---------->DOF2   ---------->DOF2    ------>MYB46(1) -->YAB1         --------->YAB1 --------->LBD16  <---------AHL20(2)<---------AHL20(2)*TSS<-----------GT1 --->GT1<---------YAB1     <-----------GT1       --------->AHL20(2)<---------YAB1<-------TEIL ------>MYB83 ->ANAC81   <-------TEIL <---------AHL20(2) <---------YAB1    ----------->GT1--------->DAG2--------->ANAC46   aattccggttttgattcattcatatatttaaacccggttcaatgttttgatttaaaaatcaaagcggttttaattgggaaaggtacgagttaaacccaac  7968100                                    <---------ANAC58                             --------->LBD16                             <------NtERF2                             ------>NtERF2                            --------->DEAR3(1)                           --------->ATERF1(1)                           <------NtERF2                                                  ------>ZmHOX2a(2)                           --------->ORA47(2)                                             ===========                           --------->DEAR4(2)                                     <<<<<<<<<TBF1                          <---------RAP2.3(1)                            <---------HSFB2a(1)                          <---------RRTF1(1)                             <---------HSFC1(2)                          ------>NtERF2                                  --------->HSFC1(2)                          <---------ATERF1(1)                      --------->ANAC58     --------->ARR11(3) >MYB46(1)               <---------DEAR3(1)                        --------->ANAC58     <---------ARR11(3) ----->TOE2(3)           --------->ANAC46                     ------>ZmHOX2a(1)<<<<<<<<<TBF1 -->P          ------>ZmHOX2a(1)    <---------ANAC58          ===================================HOX2a_HOX2a >MYB83  <---------At4g35610<---------ANAC46              <-----------GT1--------->HSFB2a(1)      ---   cttgtttcttcatcttcctcactctctgcgccgcgtttgcttccatcgttctctcgattgtttcctctcaagcgaagcttcttcttcttcgatcttcttc  7968200          <-------TEIL        --------->ARR14(2)        <---------ARR14(2)   <---------ANAC46          <---------YAB1     <---------AHL20(2)   --------->ALFIN1       --------->ICU4<---------MYB46(3)                         --------->ETT(2) <---------ANAC46  ---------->DOF2 <---------MYB52(1)                       --------->CCA1(2) <------ ====HOX2a_HOX2a --------->HSFB2a(2)  <-------GAMYB   <-----------RAV1(1)<---------TOE2(3)    <------ --->ZmHOX2a(1)  <---------HSFB2a(2) --------->MYB52(2)  <---------MYB46(3)--------->ARR11(3)------>ZmHOX2a(2)   ctcgtgtgtggattcgtttctgaaagtaagtatttttgttagttgttgatttttttttgtggttcaaatggtcttaagatttgtgtcgatatcgatctcg  7968300                                                                    <---------MYB52(1)                                                                    --------->DOF5.7(2)                 --------->HSFB2a(2)                               --------->TOE2(3)        --------->GLK1(2)                                        <-------TEIL        <-----------ARR10                                 <---------ATHB12       <---------GLK1(2)                                --------->WOX13(1)                  <------ZmHOX2a(2)    --------->YAB1     ----------->GT1               ------>ZmHOX2a(2)               --------->At4g35610 <---------ZAT14 <---------HSFB2a(2)                <------ZmHOX2a(2)  <---------TOE2(3)   --------->ARR11(3) ---LBD16       <---------LBD16                    <---------ARR11(3)  <---------TOE1(3)   <---------ARR11(3) ---HSFB2a(2) <---------AGP1                       --------->ARR11(3) <---------DOF5.7(2)----------->ARR10   gagtaaacagaatctagctctggaatcgtagaaattttcactgagacttcttagatcccaatcaagcttcgttaatgttagaaaattagcttagatcatg  7968400                                                                                        <-------GAMYB                                                                                       --------->MYB111(2)                                                                                       <---------MYB46(3)                                                                                       --------->MYB55(2)                                                                               <---------AHL20(2)                                                                     ---------->DOF2 <---------ANAC58                                                               <---------MYB46(3)    <---------ANAC58                                                            --------->ATHB12----------->GT1                                                           <---------YAB1  ----------->GT1                                              ----------->GT1 <---------WOX13(1)    <---------MYB46(3)                                      --------->TOE2(3)    --------->ICU4<------ZmHOX2a(1)   gaatatatgtgttgagagttgatataagtagacgttgaaaccctagtttggagaaatagccctgattgttgaaaaggatgttaaattggttgttgttatc  7968500                                                                                                 ----                                                                               <-------TEIL     -----                                                                             <---------ARR14(2) <----                                                                             --------->ARR14(2) -----                                                                     <---------ZAT18            <----                                                                     --------->ZAT14            <----                 <-------GAMYB                                       --------->ZAT18            -----                <-----------RAV1(1)                             <---------MYB52(1)             <-----    <---------YAB1             <---------TOE2(3)  <------ZmHOX2a(1)  <---------ZAT14   <----------DOF2   gtttctatgtttgagtctctgttgccatagtttgagattggagtattatgtaggagatgatacactgttagtgaactcatatacgtctactttgtggaat  7968600  Previous    Next  AGI:  At3g22470.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12620.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12775.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7965961    to: 7967997    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g22480.1    Description:  prefoldin-related KE2 family protein. Identical to Probable prefoldin subunit 2 [Arabidopsis Thaliana] (GB:Q9LJ98); similar to unnamed protein product [Vitis vinifera] (GB:CAO71175.1); contains InterPro domain Prefoldin (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) Range:  from: 7968085    to: 7969712    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version