Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------YAB1            --------->MYB46(2)                                                               --------->YAB1              --------->MYB59                                                               <---------ICU4          <---------ANAC46                                                              --------->ICU4           <---------ANAC58                    --------->AHL20(2)                      --------->YAB1             <---------ANAC58                  ------->TEIL                              --------->ATHB51    <----------DOF2               <---------YAB1                               <---------ICU4     --------->TOE2(3)<----            <---------AHL20(2)                              <--------HAHB4    <---------HSFB2a(1)          --------->CCA1(2) --------->ATHB12               --------->ICU4     --------->HSFB2a(1)   X      <---------TOE2(3)    <-------TEIL                  --------->TOE2(3)   ------->TEIL<---------MYB52(1)   actccatcaaggatataatgaatcaaatattcattggtatttttgttatgcaatgtaatccataattatgttttcttcgaacctttgtgtcgttaggcag  7901500        --------->TOE2(3)       ----------->GT1                                                                     <---------AHL20(2)       --------->ANAC55(2)                                                                --------->AHL20(2)       --------->ANAC55(1)                                                                <---------AHL20(2)       --------->ANAC58                                                                --------->ATHB51       --------->ANAC58                                  --------->AHL20(2)            --------->AHL20(2)       <---------ANAC55(2)                            <---------YAB1                  <---------YAB1      <-------TEIL                              --------->AHL20(2)                  --------->YAB1     --------->CCA1(2)                          <---------AHL20(2)                  <--------HAHB4     --------->ARR14(1)                        <---------AHL20(1)                   <---------ICU4    --------->ARR11(1)                         <---------AHL20(2)                  --------->ICU4    --------->ARR14(2)                         --------->AHL20(1)                  <---------YAB1    <---------ARR14(2)                    <---------AHL20(2)                       <---------ATHB12  ----------->ARR10 --------->MYB52(1)    --------->AHL20(2)                     --------->YAB1   <--  <---------------AtSPL8                 --------->AHL20(2)     ----------->GT1 <---------YAB1 <----- --NtERF2   ---------->DOF2 ---------->DOF2    --------->AHL20(2)     <-----------GT1 --------->ICU4 XXXXXXXXXXXXXXXXXXX>MIR835-3P           --------->YAB1  <---------YAB1       --------->YAB1 <-------   agagaagatacgtaaaaaggaataacgaataaaaggagtagaattaaaatttaattcttataaatagggttttaactcaactataatcattatttattat  7901600                                                          --------->ANAC58                                                          --------->ANAC58                                                      <------MYB83                                                      <------MYB46(1)                                                     --------->MYB59                                               <---------------AGL15                                               --------------->AGL15                                              <-----------------AG                                              ----------------->AGL2                            -----                                              ----------------->AG--------->LBD16               <----     --------->DAG2                           <-----------------AGL3                         --------   ---------->DOF2                            ----------------->AGL3                      <---------ANAC46 <---------YAB1                               <-----------------AGL1                      <---------ANAC58 -------AHL20(2)                              --------->TOE1(3)  <---------HSFB2a(2)      <---------ANAC58 ----AHL20(2)             ---------->DOF2     --------->TOE2(3)  --------->HSFB2a(2)      <---------ANAC55(1) --YAB1          <----------DOF2              ----------------->AGL1    --------->At4g35610 ---------   tttataaaaggggaatagacttttattccaaagaaaaacaaaacaaaaccctaatttggtaagccttccagagtagctaaaaccctactggtccgtgtag  7901700                                                            --------->CCA1(2)                                                 <---------AHL20(2)                                                <---------AHL20(1)                                                --------->ARR11(3)                                                --------->AHL20(2)                                                <---------AHL20(2)      --------->TOE2(3)                                                --------->AHL20(1)      --------->YAB1                                                <---------ARR11(3)     <---------YAB1                                               --------->AHL20(2)  <----------DOF2                                           --------->AHL20(2)      <---------DAG2 ---->At4g35610          <-----------GT1   <---------AHL20(2)   <-----------GT1 -----At4g35610<------------CBF       <<<<<<<<<MYB98       <---------ARR11(3)     <----------DOF2 ->REM1(2)    ------>ZmHOX2a(1)     <---------YAB1         --------->ARR11(3)     <---------DAG2 >ALFIN1     <---------YAB1        <---------TOE2(3)    <------ZmHOX2a(1)      <-----------GT1   ctaaaattcttcattcctattgggatatatccatatttatgttaaataaatatatttaggagatatatactttatgttaataaactttatctccaagttt  7901800                                                                           ------>NtERF2                                                                           <---------ATERF1(1)                                                                          --------->ANAC46                                                                          --------->RAP2.6(2)                                                                          --------->DEAR3(1)                                                                          --------->RAP2.3(2)                                                                         --------->RAP2.3(1)                                                                        <---------ATERF1(1)                                                                       ------>MYB46(1)                                                                ------>ZmHOX2a(1)                                                               --------->TOE2(3)                    <---------AHL20(2)                         --------->TOE1(3)                  ----------->TBP                           <---------ARR14(2)                ----------->TBP                             --------->ARR14(2)                --------->AHL20(2)                         <---------GLK1(1)                       --              ----------->TBP   --------->YAB1             --------->GLK1(1)            ------------>CBF  <---------At5g28300---------->DOF2              ----------->GT1      ------>MYB83    <-----------GT1 <-----------GT1<---------AHL20(2)     --------->At4g35610 <---------CCA1(2)<------NtERF2         <--   agtttaccgctcttgtatatatataaagatgtaatcatatgagatgaataagagggaaaacatatcctaaacctagccgcctctagtttctacaattccg  7901900                                                                                             --------                               <------MYB83                                                  --------                               <------MYB46(1)                 --------->O2              --------->AtLEC2                              --------->MYB59                  --------->REM1(1)    xxxxxxxxxxxxxxxxx                              --------->MYB111(1)              --------->bZIP60(2)  xxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->ARR14(2)                  <---------ALFIN1    <------ZmHOX2a(2)                 ------>ZmHOX2a(2)                           ----------->RAV1(1)  --------->ARR11(3)      <---------YAB1       <---------ARR14(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->YAB1    <----------DOF2                        <---------ALFIN1     <---------ARR11(3) ------->YAB1  <---------ARR11(3)                          ------>NtERF2         xxxxxxxxxxxxxxxxxxxx ----ZmHOX2a(2)--------->ARR11(3)                        <---------RAP2.6(2)     xxxxxxxxxxxxxxxxxxxx   atcatatgatgatgtctgatcttcctttggatttggtagaagaaatactctcaagggtttcggccacatctctgaaacgattacgatctacttgcaaaca  7902000      <----------DOF2      <---------DAG2   <---------ALFIN1 ->ANAC58                                                                                      ------ ->ANAC58                                                                             <---------ZAT14 xxxxxx>smallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->ZAT14 xx>smallRNA(le3)      --------->HSFC1(2)             ---------->DOF2             <---------------AtSPL8 xx>smallRNA(si3)--------->MYB52(1)     <----------DOF2                           <------ZmHOX2a(1)   atggaacactttattcaaaaaacgaagtttcagccagaaacactttcatatagctccaaaggagtctatggttctcatgttgaaggagtacagagtttgc  7902100                                                                             <---------------AGL15            --------->YAB1                                                   <---------YAB1            --------->TOE2(3)                                                --------------->AGL15         --------->WOX13(1)                     --------->ZAT18             <-----------------AGL2    ------->TEIL                                <---------ZAT18    --------->KAN4(2) <------ZmHOX2a(1) <---------ATHB12                               <-------TEIL---------->DOF2 <-----------------AGL1 --->At4g35610            ------>ZmHOX2a(1) <---------TOE2(3)    <---------YAB1     <----------ID1   tcaatgaatatcaatctcaatgtttctcctccatctgtagagtttcaaggtacacttggcataaaagatgattcccattctaatttaggacaagtcgaga  7902200                                       <---------ZAT2                                       --------->ZAT2                                     <---------ALFIN1                                   <---------RAP2.3(1)                                   <---------ATERF1(1)                                  --------->ANAC58                          <---------LBD16                                  --------->ANAC46                    --------->LBD16         =======                                  --------->ANAC58                   <---------ANAC55(2)      ------>ZmHOX2a(2)                          ---------->ID1                             --------->ANAC55(2)     ========                         <-------GAMYB----------->RAV1(1)            <---------ANAC58        <------ZmHOX2a(2)                        <---------MYB46(3)                           <---------ANAC58       <--------                     <<<<<<<<<<MYB80 --------->RAP2.3(3)             <---------ANAC46     <---------MYB46(3)                     ----------------------->TaNAC69(2)           --------->ARR14(2)   --------->ZAT2                    <---------MYB46(3)------>NtERF2               <---------ARR14(2) <-----------RAV1(2)                   <---------AtMYB61 --------->DEAR3(1)     <---------ANAC46<---------ANAC46---------          <---------YAB1--------->MYB52(2)             <---------O2  <---------ANAC55(1) --------->ALFIN1   tagtcgaagtttatcactgtgatggtttgttgttatgcgccaccagggacaatagactcgtggtttggaatccgtgtttgggggaaaccaggtggatcca  7902300                  --------->ARR11(3)                  <---------ARR14(2)                  --------->ARR14(2)                                                           ------                  <---------ARR11(3)                                                        <-------GAMYB         ------->TEIL                     --------->ANAC58                                <---------TOE2(3)      <---------YAB1        <---------MYB52(1)  <----------ID1                    <---------TOE2(3) ---------->DOF2----------->ARR10         --------->ANAC58                  <---------ARR11(3) <----- =====================HOX2a_HOX2a       --------->CCA1(2)                   --------->ARR11(3) <----- =====================HOX2a_HOX2a      --------->ARR14(2)                   <---------ARR14(3) <----- -ARR14(2)     <------ZmHOX2a(1)       <---------ARR14(2)      <------NtERF2--------->ARR14(3)<------ >ARR14(2)  <-----------RAV1(2)       <------ZmHOX2a(1)     ---------->ID1  --------->GLK1(2)<-------   actcaaagatgaatgcaggagatactctacgtttgctctaggatacgaaaacaacaaattttgtcgtcgtaactacaaaatcttgaggtattggggttgg  7902400  Previous    Next  AGI:  At3g22350.1    Description:  F-box family protein. Identical to F-box protein At3g22350 [Arabidopsis Thaliana] (GB:Q1PEN2;GB:Q9LUW2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22730.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37944.1); similar to PpSFBB9-gamma [Pyrus pyrifolia] (GB:BAF79632.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 7901912    to: 7903048    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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