Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                ------>ZmHOX2a(1)                                           <------ZmHOX2a(2)                                          --------->ARR14(2)                                          --------->ARR11(3)                                          --------->AGP1                                          <---------GLK1(2)                                          --------->ARR14(3)              <---------ICU4              <---------ARR14(3)             <---------YAB1               <---------ARR11(3)            <-----------GT1               <---------ARR14(2)              <XXXXXXXXXXXXXXXXXXXXMIR867           --------->YAB1               ----------->ARR10     --------->YAB1        <---------MYB52(1)          <---------YAB1         ----------->GT1  <----------DOF2         ------>ZmHOX2a(1)        <-       <---------YAB1      --------->TOE1(3)=====================================HOX2a_HOX2a      <--     --------->ZAT6        --------->TOE2(3)------>ZmHOX2a(2) <-----------GT1     <-----------RAV1(1)   aacctgatcactattatcatttcgcttagccttaagagtaacaagatcctctcttttcatgttatcaccatgtttcctaataaactgttgtttagtcatc  7892000                      --------->ARR14(2)                      --------->ARR11(3)                      <---------ARR14(2)                     --------->CCA1(1)            --------->LBD16                                    --------------->AtSPL3           --------->ANAC46      --------->TOE2(3)             --------------->AtSPL8          <---------LBD16        --------->TOE1(3)           --------->GLK1(2)                  <----        --------->GLK1(2)     <------ZmHOX2a(2)             --------->ARR14(2)                  -----        --------->ARR14(2)   --------->ARR14(2)             <---------ARR14(2)      ------>ZmHOX2a(1)        <---------ARR14(2)   <---------ARR14(2)          <---------HSFB2a(2)       <---------ALFIN1       <---------GLK1(2)   --------->ANAC46              --------->HSFB2a(2)   <---------At4g35610 --------TOE1(2)     --------->RVE1(1)                  <---------LBD16  <----------DOF2  --------->LBD16 -------MYB52(1) --------->AHL20(2)     --------->At4g35610 <---------GLK1(2)  --------->At4g35610   gtaagttcagaatccgcgataaaatatccacgatcccttaacatctgcatcaacgtcttctggattctgtacaatcttttgagctcctcttccgtcaaca  7892100                      <---------DAG2                      <----------DOF2                    <---------At4g35610                                                     <--------                    --------->At4g35610       <---------TOE1(3)                       --------->WOX13(1) -----ARR11(3)--------->At4g35610             <---------TOE2(3)                     <---------YAB1 ---->ARR11(3)<---------At4g35610     --------->YAB1      --------->DAG2           <-----------GT1 --   tcttcttcaccaagttatctgcagctttaccaaaaccatatcaaaattagggtttttcaaaaattgacagaaacaattaagagtttatcaatctctttga  7892200              --------->ANAC58              --------->ANAC58             <-------TEIL            --------->CCA1(2)            --------->ARR14(1)           --------->ARR14(2)        <---------ARR14(2)                                    >>>>>>>>>TBF1           <---------ARR14(2)        --------->ARR14(2)                                 >>>>>>>>>TBF1 <---------ARR11(3)   --------->MYB52(1)           <---------WOX13(1)        ----------->RAV1(1)   -- --------->ARR11(3)  --------->TOE2(2)           --------->ATHB12           --------->ANAC58     >>>> --DOF2    --------->ARR11(1)  <----------ID1   <---------YAB1              --------->ANAC58  >>>>>>> ------->GLK1(2)     --------->TOE1(2)          --------->ICU4 <----------DOF2       <XXXXXXXXXXXXXXX   gaatatatacacagatacgaaaacttacgaatagagacaaatccacagagatgattgaagaagcgatttacagagagaacgacagtggaagaagaagaag  7892300      <---------ANAC46      <---------ANAC58      <---------ANAC58                                  <------------CBF     <------NtERF2                                    <---------AHL20(2)                           <-   <---------DEAR3(1)                                 --------->AHL20(1)                           <-  --------->At4g35610                                 <---------AHL20(1)                         ---- -------->DOF2                                        *TSS        <---------YAB1                 ---- >>>>>TBF1             <----------DOF2    <-----------GT1       <----------DOF2               ------- >>TBF1             ---------->ID1    <----------DOF2--------->YAB1 <------------CBF        <-------- XXXXXMIR838    <----------DOF2--------->TOE1(1)     --------->AHL20(2)             ------------>CBF   aagaagcggcgtttcaagctttctccttttacctcgaacccttttctcaattctattatattgaagcttttattgcatttgaaactcccaatttataccg  7892400                                                                                      ----------->RAV1(1)                                                                                      ------>MYB46(1)                                                                                      ------>MYB83                                                                                    <---------MYB55(2)                                                                                    <---------MYB59                                                                                --------->ANAC46                                               ------>ZmHOX2a(1)               --------->SPL7 ---------DOF2     <----------DOF2            --------->TOE1(3)            <---------------AtSPL3 --------DAG2      <---------DAG2             --------->TOE2(3)           <---------ANAC58 -->MYB83<-----------GT1                    <---------ATHB12              <---------ANAC46 -->MYB46(1) --------->ANAC46     --------->AHL20(2)                      <---------ANAC58 -->DEAR3(2)------->GAMYB         <---------AHL20(2)              ------------>CBF  --------->MYB46(3) ---GT1 <-----------GT1  <-----------GT1------------>CBF    ---------->DOF2<----------DOF2   actttatgttttaaccctcaactttattttcgatatttaaactccaatccttaatagcctgataaaggcccaatgggcttgtacgacccaacatacttaa  7892500                           <-----------GT1             <-----------GT1    --------->MYB52(2)    <---------ZAT14                             <---------CCA1(2)  <---------MYB52(1)     <-----------GT1                      <----------DOF2     --------->TOE2(3) <----------DOF2      <---------ICU4        *TSS     <----------DOF2  <---------At4g35610   accctttagttgatttttctcaacttattacactgttcttgttggaactaaaaccctttgccttctttcttcatctctctaaatccctaattctccaaat  7892600                                                 <---------ICU4                                    <---------ARR14(2)                                       --------                                    --------->ARR14(2)                           <---------ANAC58                               ----------->RAV1(2)                               <---------ANAC46                 ------>ZmHOX2a(1)  --------->GLK1(2)                            <---------ANAC58                <---------------AGL15         --------->YAB1         =============================HOX2a_HOX2a                --------------->AGL15         <---------ICU4         ------>ZmHOX2a(2)      <--------                --------->TOE2(3)   ------->TEIL --------->ZAT6    --------->ARR11(3)       ---------               ----------------->AGL1        --------->ICU4        <---------ARR11(3)       <--------               ----------------->AG<---------GLK1(2) --------->ZAT14==============================HOX2a_HOX2a       <-----------GT1         --------->At4g35610   <---------ZAT14<------ZmHOX2a(2)      <------ZmHOX2a(1)   tttggggttttacattttccttatcaagagaacacctgaatctgaaaatgatcactacagtgctacgacgatctctccttgatgcgtcgaagaggaatct  7892700                                                     <------NtERF2                                                    <---------RAP2.6(3)                                                    ------>NtERF2                                                   <---------ATERF1(2)                                                   --------->RAP2.3(3)                                                   --------->RAP2.3(2)                                                   ------->GAMYB                                                   --------->ANAC46                                                   --------->DEAR3(1)                                                   --------->ATERF1(2)                                                   --------->ANAC58                                                   --------->ANAC58                                                   --------->RAP2.6(2)                                                   --------->RRTF1(2)                 ------>ZmHOX2a(2)                                                  --------->MYB46(3)                <---------ARR11(3)                                                  --------->RRTF1(1)       --------------->AGL15                                                  --------->ERF1           --------->TOE1(3)                                                  --------->RAP2.3(1)      --------->TOE2(3)                  --------->YAB1                 <---------ATERF1(1)       <---------------AGL15                  <---------ICU4                 --------->At4g35610      ----------------->AGL2        --------->WRKY38(1)                      <---------At4g35610      <-----------------AGL3        --------->WRKY12                         <---------ZAT2           <-----------------AGL2        --------->WRKY45                        --------->ANAC46          ----------------->AG     <---------ANAC46                          <-----------RAV1(2)      ------>MYB46(1)             < --------->At4g35610     <---------ZAT14       <---------ALFIN1         ------>MYB83--------->ARR11(3) <---------At4g35610     --------->ZAT14      <------NtERF2        ------>NtERF2    --------->ARR14(2) ->GLK1(2)       <---------ATHB12             --------->ATERF1(1) ----------->HVH21<---------CCA1(2)- -ARR14(2)     --------->WOX13(1)           --------->PCF2  <---------GLK1(2) --------->ATHB12<------ >ARR14(2)  --------->TOE2(3)          ----------->RAV1(2)--------->ZAT14 ----------------->AGL3 ---- -GLK1(2)<---------WRKY18(1)      <-----------GT1--------->ZAT2   --------->DEAR3(1)<---------ARR14(2)   ctccgcttcgttgacctcaatcaatactgttctgtttcacaacctggccccagccgccactagagtctccgacctagccttaattggatcttccgatgtc  7892800                    <---------REM1(1)               <---------ANAC58               <------MYB46(1)               <------MYB83               <---------ANAC46               <---------ANAC58              --------->MYB55(2)              --------->MYB46(2)              --------->MYB52(2)          <---------ANAC58          <---------ANAC58       <---------ARR14(2)      --------->GLK1(1)                                                                   <---------GLK1(1)      <---------GLK1(1)    ---------->DOF2            <---------MYB52(1)                 --------->ARR14(2) ---------ZAT2<---------AtMYB61              ----------->RAV1(2)                         <---------ARR14(2) -------->ZAT2<---------MYB46(3)           --------->WOX13(1)                       --------->ZAT2 -----HVH21  <---------MYB55(1)  <---------GLK1(1)   <-------GAMYB                  <---------ZAT2--- ------>DOF2<---------MYB52(1)   --------->GLK1(1)  <---------MYB46(3)    <---------MYB46(3)     <---   aaagctgggtttccgtttggtgttgaagcgaaaggaattcattttcaatctgggccgttggattttagagcttcgatggtttctcaagctggatttgcga  7892900  Previous    Next  AGI:  At3g22320.1    Description:  ATRPABC24.3 (ARABIDOPSIS THALIANA RNA POLYMERASE I, II AND III 24.3 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase. similar to eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana] (TAIR:AT5G57980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65489.1); contains InterPro domain DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); contains InterPro domain RNA polymerase, subunit H/Rpb5 C-terminal; (InterPro:IPR000783); contains InterPro domain RNA polymerase, Rpb5, N-terminal; (InterPro:IPR005571) Range:  from: 7890871    to: 7892354    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g22330.1    Description:  PMH2 (PUTATIVE MITOCHONDRIAL RNA HELICASE 2); ATP-dependent helicase. Identical to DEAD-box ATP-dependent RNA helicase 53 (RH53) [Arabidopsis Thaliana] (GB:Q9LUW5); similar to PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G22310.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60235.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, Range:  from: 7892544    to: 7895373    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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