Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ---------->DOF2            <---------AHL20(2)          --------->ANAC46           --------->AHL20(2)         <-----------GT1    <----------DOF2        --------->YAB1   <---------ANAC58       <---------ATHB12                                         --------->ICU4   <---------ANAC58     --------->WOX13(1)                               ---------->DOF2        ----- ------At5g28300--------->ATHB12  <----------DOF2<---------ATHB12     --------->At4g35610       <----   acagtgctttccatttattcattagccaatcaaagtctttatacatcaccaaggattgagacacatttagactgctaaaggtgtcattttgagaagttat  7886900           <---------ETT(1)           ----------->HVH21                    <---------At4g35610          --------->DEAR3(2)                   <---------ARR11(3)          --------->MYB46(3)              ------>ZmHOX2a(2)       <---------WRKY18(1)               <------ZmHOX2a(2)      ----------->HVH21                 <---------ARR14(2)      --------->WRKY38(1)               --------->ARR14(2)      --------->WRKY12                 <------ZmHOX2a(1)   --------->TOE2(3)                 <---------TOE2(3)                  --------->YAB1 ---->HSFB2a(2)                  <----------DOF2--------->At4g35610     --------->ATHB12          --- -----HSFB2a(2)       --------->ICU4 <---------TOE1(3)      <---------ANAC46               <---------   agaaacctttgacccgaccatggaatgatgtcgaactttaaggatccaagagctcacattttaggtgtattcattcattaggcaattctaagacttttac  7887000                                                               ----------->RAV1(2)                                                    ------>ZmHOX2a(2)                         -------                                                   --------->CCA1(2)                      --------->ZAT14                --------->ATHB12                  --------->AGP1                          <---------ZAT14                <---------ICU4                    --------->ARR11(3)                    --------->ANAC46               <---------ATHB12                   <---------ARR11(3)                  --------->ZAT6               --------->ICU4                     <---------ARR14(2)                  --------->ANAC46               <---------YAB1                     <---------AGP1                      <---------ALFIN1              <---------TOE2(3)                   --------->ARR14(2)                ----------->RAV1(1)             --------->YAB1                    <---------WOX13(1)                <-----------GT1 ------------>AtSPL8                        <---------YAB1    ------->TEIL    --------->ARR14(2) -DOF2<---------ICU4                ----------->GT1<------ZmHOX2a(2)          <---------ARR14(2)-----   attgtacataatcactaatgatttgagacatatggtataggttaatttgatagatctgattccgaacctgagctattgccaatttgccacactacacaaa  7887100                                                                      <---------ICU4                                                                      --------->YAB1                                                                     --------->ICU4                                                                   --------->YAB1                  <-                                                                 --------->AHL20(1)            <-----                                                         --------->ANAC46                      <-----                                                         --------->ANAC58                     -------      --------->MYB52(1)    <---------ANAC58             --------->ANAC58                    -------- --->DOF2                   <---------ANAC58   <----------DOF2   --------->AHL20(2)          -------- ------>GT1             <----------DOF2       <---------DAG2    --------->YAB1        ------>ZmHOX2a(1)   gttacaaaaaacagaactcattaactctttgcttcacattcaagaacacctttgggctcaagcaaaaaataataatcaactctgtttccttacacaagct  7887200    --------->REM1(2)   --------->ALFIN1  <-------MYC2  ------->PIF4                          <---------YAB1  <-------MYC3                       --------->ICU4  ------->MYC3                       <---------YAB1  ------->PIF5                   <---------------------WRI1      <----------DOF2  <-------PIF5                  <---------At4g35610           ------>NtERF2  <-------PIF4                  --------->At4g35610           --------->LBD16  ------->MYC4               --------->LBD16                 --------->ANAC58  <-------MYC4              --------->ANAC46                 --------->ANAC58  ------->MYC2              --------->ANAC58                 --------->ANAC46 -----------OsbHLH66        --------->ANAC58                <---------LBD16 ----ANAC58                <---------LBD16  ---------->DOF2 --------->MYB46(3) ----ANAC58           --------->ANAC46--------->YAB1     <-----------GT1 -->ZAT2<------ZmHOX2a(1)  --------->MYB46(3)          XXXXXXXXXXXXXXXXXXXX>MIR2112-3P         <----- ->ANAC58  <---------HSFB2a(1)  <---------ZAT2       <----------DOF2              <---------CCA1(2) ->ANAC58  --------->HSFB2a(1)<-----------RAV1(2)    <---------DAG2       <<<<<<<<<TBF1      *TSS   tgcacgtgtaggaacataccatacactcacccgcaggtgattataacaaagttccctttatacccgcctttgattcttcttcttaaatctctaaaccctt  7887300               --------->TOE1(3)   --------->ATERF1(1)                                                                 --------->ATHB12  <---------RAP2.6(3)                                        --------->WOX13(1)        -------->HAHB4  <---------ATERF1(1)                                     --------->GLK1(2)            <---------ICU4  ------>NtERF2--------->TOE2(3)                          --------->ARR14(2)          --------->ICU4 <---------ANAC58              --------->LBD16            <---------ARR14(2)          <---------YAB1 <---------ANAC58      <---------YAB1 <-----------GT1    <---------GLK1(2)  <---------GLK1(1) -----DOF2---------->DOF2    <---------LBD16    <---------ICU4              --------->GLK1(1)   ttgccgtctccctaaaaccctaattctcatttctggggtttcacatttcatcttcaccagaatccatcacactctctgaaatctgaaaatgattagcaca  7887400                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              <------NtERF2                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             ------>NtERF2                                                                                             --------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ------->GAMYB                                                                                           --------->DEAR3(2)                       <-----------HVH21                                                   --------->ATERF1(1)                      <---------ANAC55(2)                                                  --------->ERF1                      --------->ANAC58                                                     --------->RAP2.3(1)                      --------->ANAC58                            --------->At4g35610      <---------MYB55(2)                     <-------TEIL                                 <---------At4g35610      --------->MYB46(3)                     --------->SPL7       ------>NtERF2       --------->ANAC46            <---------ZAT2                 <---------TOE1(2)       --------->DEAR3(1)  <---------TOE2(3)            --------->At4g35610               --------->TOE2(3)      --------->ANAC46      ---------->DOF2               --------->ZAT2         <------ZmHOX2a(2)       --------->SPL7             <---------DOF5.7(2)           <---------At4g35610        <---------ARR14(2)     <---------ZAT18   --------->WRKY38(1)       --------->YAB1 <---------ATERF1(1)        --------->ARR14(2)     <---------SPL7    ----------->HVH21<---------ZAT2        <---------ALFIN1        <-----------ARR10     <---------ANAC58  <-----------HVH21 --------->ZAT2        =============      --------->DEAR3(1)      <---------ANAC58<---------DEAR3(1) ------->TEIL           <-----------RAV1(2)   gtacttcgccgatctatccttggtacgtcaaggcgtactctcgccgcttcggtgacctccattaacgcagctctatttcataaccttgctccagccgccg  7887500 -------ALFIN1 -------->RAV1(1) ---NtERF2 -----ATERF1(1) ->NtERF2--------->AGP1 ---->ABI4(1) --->RAP2.3(3) --->RAP2.6(2) --->ATERF1(2) --->ANAC58 --->ANAC46 ----ATERF1(2) --->RAP2.3(2) --->RRTF1(2) --->DEAR3(1) --->RRTF1(3) --->ANAC58 --->DREB2C(2) -->RAP2.3(1) -->ORA47(2) -->ERF1 <---------ARR14(2) -->RAP2.6(1) -->ATERF1(1) -->DEAR4(2) -->RRTF1(1) --DREB2C(1) --DEAR4(2) --RAP2.3(1) ->At4g35610 ->DREB2C(1) --ATERF1(1) -ATERF1(2) >RAP2.3(2) >RAP2.3(3) >ATERF1(2)                                                        <---------ZAT6 >RAP2.6(2)                                                     <---------AtMYB61 >DEAR3(1)<------ZmHOX2a(2)     <-----------HVH21            <----------DOF2       <----------DOF2 >ANAC46 --------->ARR14(2)  <---------ICU4        <---------ARR14(2)   --------->DAG2              - =========RAV          <---------At4g35610         --------->ARR14(2)  ---------->DOF2  ----------->GT1   ccacagtctccgatctagcaaatggagctactaatgtcaagtctctcccttcgaattcgagcccttttggtgttaaagtgagagactttcatgttaaatc  7887600                                              <------NtERF2                                              --------->At4g35610                                            <---------RAP2.6(2)                               <------                                           <---------LBD16                                   --------                                       <---------GLK1(2)                                     --------                 ------>ZmHOX2a(2)     --------->ARR14(2)                                    --------               <---------ARR11(3)      <---------ARR14(2)                                   ---------       <------NtERF2                --------->LBD16                                         <--------   <-----------HVH21              <---------LBD16                     --------->YAB1        <-------- --------->DEAR3(2)            <---------At4g35610                   <---------YAB1         --------- ------>TEIL   --------->ARR11(3)<-----------RAV1(1)           ------>ZmHOX2a(1)           <---------GLK1(1)   tgtaccgtcggagtttagatcgtcgattgtttcttctgcgggattcgcggctcaagagtatgctccttcttatgagaacgatggagggattggagattcg  7887700                    <---------AtMYB61                    --------->ALFIN1                    <---------ANAC46                 <---------AtMYB61      <------MYB46(1)<---------MYB46(3)      <---------MYB46(3)                                 <---------LBD16     <---------AtMYB61                               <---------ARR14(2)    <--------P   <---------DEAR3(1)                  <---------ARR11(3)  --------->ALFIN1--------->MYB55(2)                 --------->ARR11(3) -TEIL<------MYB83<---------MYB46(3)         ------>ZmHOX2a(2) ->ARR14(1)      --------->ALFIN1          --------->ARR11(3) ->CCA1(2)    <---------DEAR3(1)           <---------ARR14(2)                        <------MYB83 ->GLK1(2)   <---------At4g35610           <---------ARR11(3)                      <--------P >ARR11(1)   --------->At4g35610       --------->At4g35610       ----------->GT1   --------->ALFIN1 -GLK1(2) --------->At4g35610          <---------At4g35610 --------->LBD16  ----------->HVH21 -ARR14(2)<---------ZAT2      <---------ANAC58       --------->ARR14(2)   <----------DOF2 >ARR14(2)<---------At4g35610 <---------ANAC58      <---------CCA1(2)---------->DOF2 <------MYB46(1)   gagagtgttggtagcagcggtggtggtgatgggcttgcgatagctgatcttggtatatctccggagattgttaaagctttgaagggtaggggtattgaga  7887800  Previous    Next  AGI:  At3g22300.1    Description:  RPS10 (RIBOSOMAL PROTEIN S10); structural constituent of ribosome. Identical to 40S ribosomal protein S10, mitochondrial precursor (RPS10) [Arabidopsis Thaliana] (GB:P42797;GB:Q9LUW7); similar to PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G22310.1); similar to ribosomal protein S10 [Oxalis regnellii] (GB:AAG32317.1); contains InterPro domain Ribosomal protein S10, bacterial; (InterPro:IPR005731); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848) Range:  from: 7885675    to: 7886827    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g22310.1    Description:  PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase. Identical to DEAD-box ATP-dependent RNA helicase 9 (RH9) [Arabidopsis Thaliana] (GB:Q9LUW6;GB:Q9ZS11); similar to PMH2 (PUTATIVE MITOCHONDRIAL RNA HELICASE 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G22330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60235.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA he Range:  from: 7887293    to: 7890026    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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