Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->ATHB12                                             <---------AHL20(2)                         ---------->DOF2     --------->AHL20(2)                <---------AtLEC2    <-----------HVH21    <---------ARR11(3)                    <-----               <<<<<<<<<<FUS3      --------->O2        <---------YAB1              <---------LBD16               >>>>>>>>>>ABI3      <---------O2 <---------WOX13(1)                <---------ANAC46 ------GT1     >>>>>>>>>>FUS3      --------->TGA1a     --------->ICU4             ----------->RAV1(2) >YAB1      <---------AtLEC2       <---------TGA1a   <---------ICU4               =================== -ICU4    <---------YAB1 ====================bZIP_DOF--------->YAB1          <---------ICU4 ------->TEIL   ctgttcatggttatgcatgcatggccaaaaagattagacgtcggacattaattgatcatgattttagaaaatagttgaagaattacctggaatgtatttg  7852500                                        <------ZmHOX2a(1)                                      <---------TOE2(3)                                    --------->ICU4                                 <------ZmHOX2a(1)                         <---------ANAC46         -                               <---------TOE2(3)                        <---------AtMYB61          -- <---------ANAC58          --------->ZAT2            <---------YAB1   <---------ANAC46 <---------TOE2(3) <---------ANAC46          <---------At4g35610     --------->YAB1   --------->ZAT14    >>>>>>>>>MYB98 <---------ANAC58          <---------ZAT2          <---------ICU4   <---------ZAT14 --------->AHL20(2) ------RAV1(1)             --------->At4g35610    --------->ICU4   --------->ALFIN1 <---------AHL20(2) ======RAV               <------ZmHOX2a(1)  ----------->GT1 <------ZmHOX2a(1)   <---------AHL20(2) --   ttgtcgtgttcattcattctggtttgaggagctgaggaatgaggaagggagaattatgaagaggagagagtgttgtggtgttttaatttaacatagacga  7852600        <---------HSFB2a(1)        --------->HSFB2a(1)        --------->HSFC1(2)        <---------At4g35610        <---------HSFC1(2)         --------->ICU4                             <---------AHL20(2)  ---     <------ZmHOX2a(1)        ----------->GT1                                 --------->AHL20(2)----- -------->CCA1(2)           ---------->DOF2                          <---------ZAT6           ------- ------->ARR11(3)  ---------->DOF2 <---------YAB1              <---------ALFIN1               ------- ------->AHL20(1) --------->AHL20(2)                         ----------->RAV1(1)        <---------ZAT6   atatataggaagcttctaaataaaagaatgaaaagtcaatattgaatagacatacctattttgcaacacttgtgttatatataaatgctagtgttcaaga  7852700                                                           --------->YAB1                                                           <---------ICU4                                                           <--------HAHB4                                                          --------->ICU4                                                          <---------ATHB12                                                          <---------YAB1                                                        --------->YAB1                                                   <---------AHL20(2)                                                   --------->AHL20(2)                                                ------->TEIL       <---------YAB1               -----                    <-----------GT1          --------->ANAC58 <---------ICU4                    -----                 <---------YAB1              --------->ANAC58 --------->YAB1               <-------TEIL                --------->AHL20(2)           <---------ANAC55(2) --------->YAB1         <---------HSFB2a(1)     --------->AHL20(2)                      --------->ANAC55(1)<---------YAB1          --------->HSFB2a(1) -------->GT1  <---------ICU4                ----------->GT1 --------->ICU4            --------->DAG2 ----->DOF2   --------->ICU4                 <<<<<<<<<<AtMYC2<---------YAB1    <---------ICU4   ----- -->ANAC58 --------->AHL20(2)                --------->ANAC55(2)--------->ICU4 -------->HAHB4   <---- -->ANAC58 <---------AHL20(2)         ---------->DOF2  <---------AHL20(2)     --------->ICU4    -----   aagtcaatttcatataatttttatacagtgttttttttttgaaagacacgtatataaataatcattatgattatttgttaattatgcgaaaggttcttac  7852800                                                                 --------->ATHB12                                                                --------->AHL20(1)                                                                --------->AHL20(2)                                                            <---------AHL20(2)                                                        <----------DOF2           ----------->GT1                              <---------DAG2     --------->AHL20(2)          <---------AHL20(2)    <---------ANAC58   ----------->GT1           ------>ZmHOX2a(1)--------->ARR11(3)<---------AHL20(2)        <---------ANAC58 ---->ANAC46          ==============HOX2a_HOX2a     ---------->ID1<------------CBF        <---------ANAC46 ---->ANAC55(2)       ------>ZmHOX2a(2)   --------->REM1(2) --------->AHL20(2)            <---------ANAC58 ---->ANAC58        --------->ARR11(3)  ------>NtERF2  <---------ANAC46              --------->YAB1 -----ANAC55(2)     <---------ARR11(3) <---------ANAC46<---------ANAC58    --------->GLK1(1) ---->ANAC58 <<<<<<<<<MYB98 <---------MYB59   <---------ARR11(3)<---------AHL20(1)  <-------TEIL   gaaacaagttaatatgttaaatgatctattcctaatttatgccgagtagaccttgttgctttttaatttattgcaagaattctaaattcatgacttgtag  7852900                                                                                                   <-                                                                                                   <-                                                                                         <---------ARR14(2)             --------->AtMYB61                                                           --------->ARR14(2)           ----------->RAV1(1)                                                          --------->YAB1           ------>NtERF2          --------->ICU4                                      <---------TOE2(3)          --------->ANAC46   --------->ANAC58            ---------->DOF2       --------->AHL20(2)  <-          --------->RAP2.6(2)--------->ANAC58        <---------ZAT6            <---------AHL20(2)<---          *TSS   --------->MYB52(1)       <---------GLK1(1)                   --------->YAB1     ----         --------->MYB46(3)---------->DOF2--------->GLK1(1)  ----------->GT1 <---------YAB1   <------   ggatagacttagccaccacaaacagagactaaagcaatttttggatttcaaattggtgttaaagagtataaattgacttattaaaatcaaggatactaat  7853000                       <-----------------AGL3                       ------>ZmHOX2a(2)                    <---------ZAT6                     --------->ARR11(3)                 <---------MYB52(1) --------ANAC58      --------->ARR14(2)           --------->ETT(2)           <-------GAMYB --------ANAC58      <---------ARR14(2)           --------->WRKY38(1)       ----------->GT1 --------ANAC46      <---------AGP1               --------->ZAT18           ------>ZmHOX2a(2)    <--- ------AHL20(2)      <---------ARR11(3)         --------->REM1(2)       <---------YAB1<------ZmHOX2a(1) ----->ARR11(3)     <---------CCA1(2)          <---------ANAC46 -------->P  =================HOX2a_HOX2a ---ICU4         <---------LBD16  <-------TEIL --------->ALFIN1<-----------GT1      <---------TOE2(3)   ttcttggaagcattccaactctggatcttctattggtacatggaaaactgtgtggaccgatagtcttaccagttttgatcgttacaaaggatgatgctac  7853100                                         --------->ANAC58                                         --------->ANAC58                                     <---------ANAC58                                     <---------ANAC55(1)                                     --------->ANAC55(2)                                     <---------ANAC58                                     <---------ANAC46                                     <---------ANAC55(2)                                <---------ICU4                                -------->HAHB4         <-------GAMYB          --------->ATHB12        <-----------RAV1(1)     -------->ATHB1        <---------MYB46(3)      --------->ATHB51        --------->MYB52(2)     --------->ICU4                <---------DAG2        --------->MYB55(2)     <---------YAB1                <----------DOF2           <---------AHL20(1)    <---------ANAC58           <---------ATHB51          <-----------GT1              --------->YAB1    <---------ANAC46        --------->AHL20(2)   -------->P <---------DAG2   ----------->GT1    <---------ANAC58      --------->TOE2(3)   <---------MYB52(2)        --------->KAN4(1) ------ALFIN1      ---------->DOF2  <-----------------------TaNAC69(2) <---------KAN4(2)    <--------   cacatcgcgtttgttgcaagagaaagaaacttaattattgcgtatgcaacttacccattatacctttttgaagaatgttcagttactaacatatttacct  7853200                                                 <---------ARR14(2)                                                 --------->ARR14(2)                       --------->ANAC58         <------ZmHOX2a(1)                   <-------TEIL------->TEIL--------->HSFB2a(2)                <---------ANAC58  <---------------AtSPL8                <---------ANAC58  <---------------AtSPL3                 --------->ANAC46               <---------------AtSPL8 ------->TEIL       --------->ARR14(2)     <---------AtLEC2---------->DOF2<---------SPL7       <---------ARR14(2)      <----------DOF2 ---GT1   ------->TEIL --------->ANAC58    <---------HSFB2a(2)      <---------YAB1   ccattgtgcatgtattttgggtacaaagccatggatgttgtacgtctagaggaattgcaaatccatcgttcttatactaaacacttttgaaacatcacct  7853300                                                          --------->HSFB2a(2)                                                          --------->LBD16                                                          <---------HSFB2a(2)                                                         xxxxxxxxxxxxxxxxxxx>smallRNA(i2)            ---------->DOF2                          <---------GLK1(1)           <---------ATHB51          --------->AHL20(2)                      <------MYB83                   --------->ICU4          <---------AHL20(2)                      <------MYB46(1)          --------->ANAC58    ------>ZmHOX2a(2)                            <---------TOE1(2)         --------->ANAC58   <------ZmHOX2a(2)                             <---------TOE2(2)        --------->DAG2  <---------ARR14(2)                        <---------MYB52(1)           ---------->DOF2   ------->TEIL  ------->TEIL                       ------->TEIL--------->MYB59      --------->YAB1<---------YAB1  --------->ARR14(2)        xxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------TOE2(3) ------->TEIL   catggatccaaattaaaagagatagattgaacaagtatggacgtcccttagtaggttatccgagaaaaactatggtaaagcaaattatgaatgtatatat  7853400  Previous    Next  AGI:  At3g22234.1    Description:  pseudogene, putative ribulose 1,5-bisphosphate carboxylase, similar to ribulose 1,5-bisphosphate carboxylase GB:AAA82567 from (Ludwigia peruviana); blastp match of 70% identity and 9.6e-53 P-value to GP|17224644|gb|AAL37058.1||AF307471 ribulose-1,5-bisphosphate carboxylase large subunit {Dioscorea pyrenaica} Range:  from: 7852910    to: 7853483    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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