Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           ---------->DOF2                                    <<<<<<<<<TBF1 --------->ZAT2                                 <-------TEIL     <---------ZAT2                           ---------->DOF2   ----------->RAV1(2)                        --------->TOE2(3)   --------->GLK1(2)                      --------->ARR11(3)   <---------ARR14(2)     ----------->RAV1(2)                      <---------ARR11(3)   <---------GLK1(2)    <---------ALFIN1              ----------->GT1 --------->HSFB2a(1) --------->At4g35610                         ------>ZmHOX2a(1)  --------->DAG2     --------->RVE1(1)     --------->ARR14(2)  --------->MYB46(3)       --------->HSFB2a(1) ---------->DOF2>>>>>>>>>GATA-1 --------->ARR14(2)<---------At4g35610                   <---------HSFB2a(1)   acaaaaagtagatagatagataaaaatctcaaaggttcttcttcagaacctgagcttagtaaagaaccacctgttcttcccagtcttgaaacgttcctca  7844200                                                                                         <---------ANAC46                                                                                         <---------ANAC58                                                                                  --------->REM1(1)                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                              --------->CCA1(2)     <                                                                             --------->ARR11(3)    --                                                                             <---------ARR14(2)   ---                  ---------->DOF2                                            <---------ARR11(3) <----               <----------DOF2                                               --------->ARR14(2) <----              --------->TOE2(3)            <---------------AGL15             <-----------ARR10  <----         --------->At4g35610           ------>ZmHOX2a(1)                     <---------AGP1     <----         <---------At4g35610          --------->TOE2(3)                      --------->AGP1     <----     --------->TOE2(3)              <---------YAB1                          <---------CCA1(2)--------     --------->TOE1(3)  <-----------HVH21  --------------->AGL15        <-----------HVH21<---------ANAC58   agcttagccttagcttcctttaaagcagtcaccttcttatccttactcttaagagcatcaagagtcgctacttccttcagatctacatcgagcgtgtaac  7844300         --------->At4g35610         <---------At4g35610       <-----------RAV1(2)      <---------At4g35610                                                                       <----     <-----------HVH21                                                                         <----- --------P --------->GLK1(2)                                                         <---------At4g35610 ------->REM1(2)                                                                    --------->LBD16 ------>ALFIN1                                                                     <---------ANAC58 -----ANAC46                                                                       <---------ANAC58 -----ANAC55(1)                                                        <---------At4g35610 <--------- -----ANAC58          <-----------GT1                         ------>NtERF2        <---------ANAC46 -----ANAC55(2)----------->GT1                    --------->ATHB12     --------->At4g35610 ========== -----ANAC58 <---------ANAC46                  --------------------->WRI1         <---------LBD16   < --->HVH21<---------GLK1(2)                <-----------GT1   --------->DEAR3(1)<----------DOF2 <-----   gtgtaggcatcagatgctggtaattcacgagcttgatgaaacatttcactcttgatttcttcgccgtcttcttcgctgagtctttgcggatgactttgct  7844400                                                                                                  ---                                                                                               ------                    --------->O2                                                               <-----                    <---------O2                                                              -------                    <---------TGA1a                              --------->ARR14(2)        --------->RAP2.3(1)                    <---------bZIP60(2)                          <---------ARR14(2)        <------NtERF2                   <------NtERF2                                <------ZmHOX2a(1)         ------>NtERF2                 ----------->HVH21                    <-----------HVH21                   --------->LBD16                 <---------DEAR3(1)                   <-----------TGA1                   <---------DEAR3(1)                 --------->DEAR3(1)                  --------->ANAC55(2)                 <---------ATERF1(2)                --------->ATERF1(1)                  <---------ANAC58             <----------DOF2<---               --------->LBD16                    <---------ARR14(2)              <---------DAG2 ---- -----LBD16    <---------ATERF1(1)        <-----------HVH21   <---------TOE1(2)  <---------DAG2------ ----ANAC58   <---------DEAR3(1)     --------->MYB46(3)<---------MYB52(1) <---------YAB1 <---------RAP2.3(3) -DOF2       <---------LBD16       --------->MYB52(1)<---------ANAC55(2)<---------ICU4   --------->ATERF1(2) =============================bZIP_DOF    --------->At5g28300 <---------TOE2(2)  <----------DOF2----- ---------MYB52(1)------>NtERF2 --------->ANAC55(2)  <---------ANAC58   --------->YAB1   <---------RAP2.6(2) ----ANAC58  --------->SPL7     --------->ANAC46  --------->ARR14(2)   <---------YAB1   <---------LBD16   cgggtacttcttcagtccggcgacgaggcagtgtccgtaacgacggtcactggttccgtcatcgaaggatttgatgatcactgcctttttgccggcgtaa  7844500            <-----------ARR10            --------->ARR11(3)        <------ZmHOX2a(1) ---->GAMYB <---------ARR11(3) --->ARR14(2)                                                  ---------->DOF2                    --- ----ARR14(2)                                                --------->LBD16             --------->ATHB12 ---->HVH21<------ZmHOX2a(1)<---------At4g35610             --------->DEAR3(1)          <---------YAB1 ---------MYB.PH3(1)        --------->At4g35610          --------->DEAR3(1)             --------->ICU4 ----->MYB46(3)     <----------DOF2                      --------->AtMYB61            --------->CCA1(2) --->MYB52(1)<------ZmHOX2a(2)             <---------YAB1<---------ALFIN1 --------->TOE2(3)     <---- ---->RAP2.6(3)<---------At5g28300 <---------GLK1(2)    --------->MYB46(3)--------->TOE1(3)<---------WOX13(1)   cggccttgaaggaggatcaccgctttgttctgcttcagaaacttcaccattgtttctcaccaccgcaaagaagaaaccctaattgaagagatgattgtct  7844600                    --------->TOE2(3)        <---------ZAT2        <---------At4g35610       --------->ALFIN1                                                    ---------->DOF2      <---------ZAT14                                                    ------>ZmHOX2a(1)      --------->ZAT18                                     <---------AHL20(2)      <---------ZAT18                         <---------ARR14(2)        --------->TOE2(3)      --------->ZAT14               ------------>CBF      --------->AHL20(2)    *TSS--------->At4g35610        <-----------GT1 ---------->ID1      ------>ZmHOX2a(2) ------>AHL20(2)    --------->TOE1(3)         --------->ARR14(2)     --------->ARR11(3)          <--- ------DOF2 ----------->GT1    <---------AHL20(2)  ------>NtERF2     <---------ARR11(3)      <-------   ttatatagtgtgctgagtaaaaccctaatttgttttatttcaatatcgaattcggcccattaaaatgagatgatcctaaaaggcccatgtaagtttctta  7844700                                  --------->ARR11(3)                                  --------->AHL20(1)                                  <---------AHL20(1)                                  <---------ARR11(3)                                --------->ARR11(3)                                <---------ARR11(3)                                --------->AHL20(1)                                <---------AHL20(1)                        --------->ARR14(2)                        <---------ARR14(2)                       ------>MYB46(1)              <---------AHL20(2) ------CCA1(2)         ------>MYB83                --------->AHL20(2) --ANAC46        --------->MYB46(3)  <---------AHL20(2)                                     <--------   tatcgttttaggccctgaaaccaccaaattcgaaaatatttttttgaacaccattttatatgttttgtttggacatcgttttatatgttttgttttacaa  7844800                           --------->At4g35610                           --------->GLK1(1)                           --------->ZAT2                           <---------GLK1(1)                     <---------LBD16                    --------->ALFIN1                  <---------ZAT2                                     <-------GAMYB                  --------->At4g35610                              <---------TOE1(3)                  <---------At4g35610                      <---------ANAC46            <-------TEIL   <---------ZAT2    --------->ANAC58      <---------TOE2(3)           --------->GLK1(2)                 --------->ANAC55(2)  <---------At5g28300               -          <---------GLK1(2)<---------At4g35610          ----------->TGA1 <---------TOE2(3)          <          <---------ARR14(2)      --------->LBD16       ----------->HVH21<---------YAB1           ---          --------->ARR14(2)  ---------->CDC5<---------ANAC55(2) <-----------GT1            ------->TEIL ---------->DOF2  --------->ZAT2<---------LBD16   <---------WOX13(1) --------->At5g28300   <---------ALFIN1 ---GT1 ----------->ARR10 ----------->ARR10  --------->ANAC58  <----------DOF2            <---------ZAT18   aactaaagtcgagattcgtaagctgggggagctctgcgggatggagaacgtaattgctgtgacggttttacggttaacattggacgttgttctgcacctc  7844900                --------->ZAT18                <---------ZAT14        <---------ANAC46                                        --------->ZAT2       <---------LBD16                             <---------ATHB12       --------->ATHB12     <-----      --------->MYB52(1)                     --------->ANAC58   --------->At4g35610          <------MYB83   <---------ICU4                   <---------ANAC46            <---------At4g35610          <------- -------->HSFB2a(2)                 <---------ANAC58        --------->ALFIN1                 <------MYB46(1) ---------HSFB2a(2)                 <---------ANAC58--------->YAB1      <---------WOX13(1)   <------- ----->P<---------ANAC55(2)<----------DOF2   --------->ANAC58   <---------ZAT2              ---------   taccagaattacggagagtctactatgggctttatatcgcttgggagaagcaaatcataagagtggagctggagattgattcgatatttgtagttgggtt  7845000                                                                           <---------REM1(1)------->MYC2                                                                   --------->PCF2           <-------PIF5                                                                   --------->PCF5           ------->PIF5                                                                   <---------TCP20          ------->MYC3                 <---------GLK1(2)                                 <---------ARR14(2)       ------->MYC4                <--------ATHB1                                     --------->ARR14(2)       <-------MYC2                <---------ICU4                                    <---------TCP16(2)        <-------MYC3                -------->HAHB4                                    --------->ATERF1(1)       <-------PIF4               <---------ATHB12      <---------ANAC58             ------>NtERF2--------->ZAT2               <---------YAB1        <---------ANAC46             <------NtERF2<---------At4g35610       --------->ANAC58  --------->MYB46(3)                      <---------SPL7<---------ZAT2 -------  --------->ANAC58      --------->ANAC58                         ----------->HVH21          ------->PIF4  --------->ANAC58      --------->ANAC46                         <---------ATERF1(1)     <----------- ----GLK1(1)   --------->ICU4        <---------ANAC58           --------->ATERF1(1)  --------->ALFIN1 --ANAC58     <---------TOE2(3)  <----------DOF2                <---------ANAC58   <---------ANAC46 --ANAC58    --------->YAB1---------->DOF2                      <---------ANAC58  <---------MYB46(3) >MYB59--------->ANAC58 --------->ANAC58                  <-----------RAV1(2)  --------->At4g35610<--   tctcaagacaaggattaatgattctcacccaaagtctttccttgtacaattgtgctatggccaggggcggacccatgttgaagctgggtgggcatgtgcc  7845100  Previous    Next  AGI:  At3g22230.1    Description:  60S ribosomal protein L27 (RPL27B). Identical to 60S ribosomal protein L27-2 (RPL27B) [Arabidopsis Thaliana] (GB:Q8LCL3;GB:Q9LIE0); similar to 60S ribosomal protein L27 (RPL27C) [Arabidopsis thaliana] (TAIR:AT4G15000.1); similar to unknown [Populus trichocarpa] (GB:ABK92640.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) Range:  from: 7843974    to: 7844604    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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