Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->GLK1(1)                                                   --------->At4g35610                                                 <-----------RAV1(2)                                               <-----------HVH21              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------At4g35610             <---------------AGL15         <---------TOE1(3)             --------------->AGL15         <---------TOE2(3)                                      <--            <-----------------AGL3        <---------DOF5.7(2)                          --------->AHL20(2)            ----------------->AGL2     --------->TOE1(3)                         ----------->GT1 ----            ----------------->AGL3     --------->TOE2(3)           --------->ANAC46    <---------AHL20(2)   tgtctcgattgtgaaccatatatagatgtccagtcccataaccttaacgtttcagatgtccatttctaaacgcgagggaagaagtgtattaaaatgtgtt  7834800                                                                                               <-----                                                                                               <-----                                                                                         <---------AHL20(2)                                                                                        <---------AHL20(1)                                                                                        --------->AHL20(2)                                                                                    <---------YAB1<--                                                                          <---------At4g35610 -------                                                                   --------->AHL20(2)   <---------AHL20(2)               <---------AHL20(2)                                  <---------AHL20(2)--------->YAB1              <---------AHL20(2)                                  <---------AHL20(2)<---------AHL20(2)              --------->AHL20(2)                              <---------AHL20(2)   <---------AHL20(1)          --------->ICU4                               <-----------GT1    --------->At4g35610 <------ -------ALFIN1<---------AHL20(1)        <---------AHL20(2)    --------->AHL20(2)   --------->AHL20(1) ------------->AGL1    --------------->AGL15 <-----------GT1  <---------AHL20(1)   --------->AHL20(2)   ccacatcgagacataatttttttttcttcaaattggagtgattttttttactatatttctccattttatttatttcagcagaaaatataataaaatttta  7834900                                                                                             <-------       <---------YAB1                                                                      <---------ICU4      <---------AHL20(2)                                                                  --------->ICU4 ----YAB1 <---------TOE2(3)                                             ----------->RAV1(1)--------->YAB1 ----AHL20(2)                                                         <---------ZAT14     <---------YAB1 -------WOX13(1)                                                      <---------ZAT18   --------->YAB1 -->AHL20(2)                   <---------MYB52(2)    <----------DOF2  --------->ZAT14   <--------HAHB4 ---AHL20(2)        --------->At4g35610           <-----------GT1     --------->ZAT18  <---------YAB1   attgatatttttatggtatggctgctatatacaactagcctcttatttgttttttctttcccttgctactactgcaccagttacaacctattattattat  7835000                                                                                  <-----------TGA1                                                                                  <-----------HVH21                                                                                 --------->bZIP60(1)                                                                                 ====================                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                        --------->AHL20(1)       <---------bZIP60(1)                                                       --------->AHL20(2)        --------->bZIP60(2)                                                       --------->YAB1            <---------TGA1a                                                     --------->AHL20(1)          --------->ANAC46                                             --------->WOX13(1)                  <---------O2                                            <---------AHL20(2)                   --------->TGA1a                   --------->ATHB12         --------->AHL20(2)                   --------->O2            --------->At4g35610        --------->AHL20(2)                        --------->ANAC55(1)           ----------->RAV1(1)         <---------AHL20(2)                        <---------ANAC55(2)           ----------->GT1<-----------GT1  --------->AHL20(2) <---------TOE2(3)  --------->ANAC55(2)         --------->At4g35610           --------->AHL20(1) --------->YAB1        <-----------STF1 <-----------HVH21--------->ICU4  --------->AHL20(2) --------->AHL20(2)     ----------->HVH21 --YAB1  <---------At4g35610   <----------DOF2      --------->YAB1      ------------>CBF----------->GT1   ctctgtgagagagcagcaaaatgatttgtttccctttaaaataaaataaatcaaaaataatattaagaaaatgactcaatgacacgtcactggaaaaaat  7835100                                                 <---------ICU4                         --------->AHL20(2)      --------->YAB1                      --------->AHL20(2)        <---------YAB1                        <---------At4g35610                     <---------AHL20(2)       <---------ICU4                          --------->ZAT2                     --------->AHL20(2)       --------->YAB1                          --------->At4g35610                  <---------AHL20(2)         <---------YAB1                     ------>MYB83                 --------->AHL20(2)  --------->ANAC46                           ------>MYB46(1)              ----------->GT1    --------->CCA1(2)     *TSS      ------>ZmHOX2a(1)    <---------ZAT2             --------->ICU4     --------->ARR11(3) ------------>CBF          --------->MYB46(3)           ---------->DOF2  ---------->DOF2--------->YAB1--------->YAB1    <-----------GT1 =====================bZIP_DOF  <---------ARR11(3)--------->TOE2(3)  <---------MYB52(1)   caaatggaactcgaaaagattaaataaataaaaagatataaggcatcatcatcatcaattcatcatcctctgttttgtaaccaatctcagctctccctct  7835200                   <---------GLK1(2)                                               <------ZmHOX2a(1)                  <---------At4g35610                                         <---------REM1(1)          <---------GLK1(2)                                               ------>ZmHOX2a(2)          <---------ARR14(2)         ------>ZmHOX2a(1)                    ================HOX2a_HOX2a          --------->ARR14(2)       ------>ZmHOX2a(2)                     <------ZmHOX2a(2)         <------ZmHOX2a(1)   <----------DOF2<-----------GT1              =================HOX2a_HOX2a         =================================HOX2a_HOX2a                   --------->ARR14(2)       --------->LBD16  ==================HOX2a_HOX2a                   <---------ARR14(2)    <------      <---------LBD16   ------>ZmHOX2a(1)<----------DOF2             <---------------------WRI1<-----   caaacaatccaggattcttcagattcctctcctttgatcctctctttaacaatctctctctctctgttttcttcgatccgttgtaggagaaaatggtcgt  7835300                                   --------->ARR14(2)                       <---------SPL7                      <---------ANAC58                      <------NtERF2<---------ARR14(2)                      <---------ANAC58                     --------------->AtSPL8                     ------>NtERF2 <---------ARR11(3)                    <---------ANAC46                                   <---------ICU4                    <---------ANAC58                                  --------->ICU4       ------>ZmHOX2a(1)           ------>NtERF2 --------->SPL7  <---------ALFIN1             <---------YAB1     ------>ZmHOX2a(2)          --------->DEAR3(1)      <---------GLK1(2)               ------>ZmHOX2a(2)    <---------ARR11(3)          ----------->HVH21     <---------TOE1(2)                 ================================HOX2a_HOX2a    ------->GAMYB   <---------ANAC58<-------TEIL                <---------ARR11(3)     --------->ARR14(2) ---MYB46(3)     ---------->CDC5<---------TOE2(2)               --------->ARR11(3)     --------->ARR11(3) --GAMYB  --------->ANAC46     <-----------RAV1(2)        <----------DOF2         <-------TEIL   tatcaacagtctccgacgcttggcgcgtaccactcaggttcttccacttcttcttactcgcttgatgatctcattattctcacatacatgatcctcgatt  7835400                --------->LBD16               --------->HSFB2a(2)                                                <---------ARR11(3)              <---------LBD16                                                     --------->GLK1(2)       <---------ICU4                   <------ZmHOX2a(1)                         <-----------ARR10      <---------YAB1                 <-----------RAV1(2)                          --------->ARR11(3)      --------->ICU4                <------ZmHOX2a(2)                         --------->YAB1    <---------ICU4                 --------->ARR11(3)                        --------->AHL20(2)    --------->YAB1         <---------ANAC58                            ----------->GT1   <---------YAB1          <---------ANAC58                            --------->YAB1 --------->YAB1--------->LBD16     <---------AGP1                  --------->MYB46(3)         <------   gcatcatcataattttccccgaatgttttgcttaatagatcaggagtcagaataacattgaatatgccaacaattgtaaataaaaatctaatcttttttc  7835500                      <------ZmHOX2a(1)              --------->ALFIN1            <---------ANAC58            <---------ANAC58            ===========================bZIP_DOF            <---------ANAC46    --------->ARR11(3)            <---------TGA1a   --------->DAG2            <---------bZIP60(2) <-----------HVH21                  --------->GLK1(2)       <---------DAG2            <---------O2     --------->DAG2           <-----------GT1                      <--------- --------->ANAC58  <-----------RAV1(2)             --------->ARR14(2)            --------->ANAC46 --------->ANAC46 <------ZmHOX2a(2)                ---------->TaMYB80            --------->ANAC58 --------->ANAC58--------->ARR14(2)                <---------ARR14(2)            --------->ANAC58 <----------ID1  <---------ARR14(2)     <----------DOF2  <----------DOF2      <---------ATHB12    --- -----GT1   --------->O2    ---------->DOF2  --------->HSFB2a(2)  <---------GLK1(2)   --------->MYB46(3)   aaaacgccaaattgacgtggatcaggatgaaaaaggtcatgtcttttcgagagtatatacttttctgagattctccagtaatcaaggaacaaactttttc  7835600                                                                                   --------->AHL20(2)                                                                                  <---------YAB1                                                                                <---------ICU4                                                                               <------ZmHOX2a(2)                                                                               <---------YAB1                                                                               ==================HOX2a_HOX2a                                                                               --------->ICU4                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)     --------->ALFIN1                                                  <---------ANAC46  --------->DAG2                 --------->GLK1(2)                  --------->GLK1(2)       >>>>>>>>>MYB98 ---------->DOF2             --------->YAB1       ----------->GT1 <---------HSFB2a(1)     ------>ZmHOX2a(1) -DOF2                     <---------WOX13(1) ---------->DOF2     --------->HSFB2a(1)<---------CCA1(2) ------>YAB1            <---------YAB1 <---------YAB1 --------->AHL20(2)     <---------GLK1(1)   tcataaagtggaacaaatctcttgttgtgaatgataatcttcttataacaaagagataaatttgaagaaaattctgtggagatcattatatcctaaccca  7835700  Previous    Next  AGI:  At3g22200.1    Description:  POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase. similar to acetylornithine aminotransferase, mitochondrial, putative / acetylornithine transaminase, putative / AOTA, putative / ACOAT, putative [Arabidopsis thaliana] (TAIR:AT1G80600.1); similar to hypothetical protein OsI_027210 [Oryza sativa (indica cultivar-group)] (GB:EAZ05978.1); similar to gamma-aminobutyrate transaminase subunit precursor isozyme 3 [Lycopersicon esculentum] (GB:AAO92257.1); similar to gamma-aminobutyrate transaminase subunit precursor isozyme 1 [Lycopersicon esculentum] (GB:AAO92255.1); contains InterPro domain Pyridoxal phosphate-dependent transfer Range:  from: 7835155    to: 7839068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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