Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                =======                                                                                              <------ZmHOX2a(2) ----->YAB1                                                                                  -------- >GAMYB                            --------->WRKY18(1)                                       <------- ->MYB46(3)                 --------->ZAT6                                         <<<<<<<<<MYB98 --MYB52(2)  --------->AHL20(2)   <--------ZAP1     ---------->DOF2  <----------DOF2   <----------DOF2   cacaattgattcagattaaaaactagactaaaactaggtcaagtttcttcaatagaaaggaaatgaactagctttataaatctatgttactttgagatca  7793800                                                         <---------ATHB12                                                       --------->YAB1       ---------->DOF2         ----------->GT1         --------->WOX13(1)     --------->TOE2(3) <------ZmHOX2a(1)              --------->MYB46(3) =============================HOX2a_HOX2a    <---------ARR11(3)                              <------- ->ARR11(3)         <-----------RAV1(2)      --------->ARR11(3)                              -------- --ARR11(3)       --------->YAB1            --------->YAB1                                   --------   acacaaacctaaagtcacaatcacaggagcgaagagaaaaatcgaaagataattcaacaatcactgatgcccatataaaaacacctaaaaactaaacatc  7793900                   ----------->GT1              --------->STY1(2)              <---------STY1(2)                                                  <------ZmHOX2a(2)         --------->ARR14(2)                                                      ====================         --------->GLK1(2)                                                      --------->ARR14(2)         <---------ARR14(2)                                                     <---------ARR14(2)         <-----------ARR10                                                      --------->ARR11(3)    --------->GLK1(2)                                                           --------->AGP1   <---------GLK1(2)                --------->YAB1                             --------->At4g35610  - --ICU4  <---------ARR11(1)   --------->GLK1(2)                           --------->ANAC58         <- ->YAB1 <---------ARR14(1) <---------AHL20(2)    --------->ARR11(3)       --------->ANAC58  <-------- ->ANAC46------->TEIL     --------->AHL20(2)     <---------ARR11(3)--------->ZAT14          ---------   acccagaatcgaatctagctagggtttataaaattctatcaaaagtttgaagatttcataagaaaacacttcgctcaagacagatccagcaaaattaaac  7794000         --------->CCA1(2)        --------->ARR11(3)        <---------ARR14(2)        <---------ARR11(3)      <------ZmHOX2a(1)        --------->ARR14(2)   --------->HSFB2a(2)      ----------->ARR10      <---------HSFB2a(2) =====HOX2a_HOX2a--------->GLK1(2) --------->DOF2 --------->ARR14(2) -----ZmHOX2a(1)<---------ARR14(2)                   --------->ARR11(3)   --------->TOE2(2) -AHL20(2)      <---------GLK1(2)         <------ZmHOX2a(1)               --------->TOE1(2) >AHL20(2)<-------TEIL    --------->GLK1(2)      ---------->DOF2         ----------->RAV1(2)        <   aggaaaggaagatacacagattctgaaaattctaggaacaagtaggagaatgaaagacattggatttaagagaatacctgagaagaattcgtttctctct  7794100            <----------DOF2      --------->ARR14(2)                                                      --------->ANAC58      <---------ARR14(2)                                                      --------->ANAC58    <------MYB83              <----------DOF2                             <---------HSFB2a(2)    <------MYB46(1)        <---------ARR11(3)                    --------->ZAT18           ----------   --------->MYB52(2)      --------->ARR11(3)        --------->At4g35610*TSS  --------->ANAC46 <---------MYB52(1)  --------->At4g35610       <---------AHL20(2)--------->ZAT14         ---------->DOF2 ---------SPL7       <---------At4g35610 --------->ANAC46        <---------ZAT14    ---------->DOF2 -   ctcgttcggttcttctttgattttgctgagaactttgctctccacaaaatttatgagctctgagatgtgaactgttcgacaagccagaaagaaaagaaaa  7794200                                                                                                 <---                                                                                                <----                                                                                               ------                                          ----------->GT1                                      <-----                                       --------->DAG2                             --------->ANAC58                               --------->MYB59                --------->DAG2      --------->ANAC58  --------->DAG2            <---------GLK1(2)      <---------TOE2(3)    --------->AHL20(2)     <----- ->GT1                  <-----------------AGL1  <---------AHL20(2)      <---------AHL20(2)     ------ --------->DOF2      <----------DOF2  ---------->DOF2       ---------->DOF2 <---------AHL20(2) ------   aaaaaaggtgttttttttttgtgctttacagattaggcccaaaagtgtaatttatggataagaaaaggcccaaattatataatcaagcccaatgcaagat  7794300                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------GLK1(2)                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ARR14(2)                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------LBD16                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----TEIL                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --ZmHOX2a(2)         --------->YAB1               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->ARR14(2)         --------->TOE2(3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----ARR14(2)       <---------ARR11(3)            <------------------------ANAC81 ----ARR11(3)       --------->ARR11(3)      <---------YAB1 --->AGP1--------->GLK1(2)       ---------->ID1  <---------AHL20(2) --->ARR11(3)      <---------CCA1(2)   <---------At4g35610            <-----------GT1----------->GT1   ccataactcggaatctctgatatatcttaatttttgttgtcatatgctgattttttttttttttttttttttttactgatatgtgtatagaaatataaac  7794400                                                                                 <---------HSFB2a(2)                                                                                 --------->HSFB2a(2)                                                                              <----------DOF2                                                                         --------->ARR14(2)                                                                         <---------ARR11(3)                                                                         --------->KAN4(2)                                                                         --------->ARR11(3)                                                                         <---------ARR14(2)                                                                        --------->KAN4(1)                                                                        --------->GLK1(1)                                                  <---------AHL20(2)    <---------KAN4(1)                                                  --------->AHL20(2)    <---------GLK1(1)                                      <---------ANAC55(1)               <----------TaMYB80                                      <---------ANAC46                  --------->HSFB2a(1)                              <-------TEIL     ------->TEIL             <---------HSFB2a(1)                     --------->DAG2   <---------ANAC58                 ---------->TaMYB80     -------  <-------TEIL      ---------->DOF2   <---------ANAC58                 <---------KAN4(2)      <------   tagattcatttctgacaaaaaaaaaagctagattcattttacgtggatgtatttatatacacatatcagtaagaatatcccttttagaaaaaacatttaa  7794500                                                         ---------->DOF2                                               <-----------GT1   ------->TEIL         --------->YAB1    --------->ARR11(3) --------->ZAT18     --------->YAB1       --------->AHL20(1)    ----------->GT1 <---------ZAT18    <---------YAB1        <---------ARR11(3)   --------->DAG2 -->AHL20(2)      --------->YAB1         <---------AHL20(2)   ---------->DOF2 ---AHL20(2)     <---------ATHB12 ----------->GT1   ----------->GT1              <-----------GT1 ----   atgtgcacctatttcataaatcataataagaatgtaatgttatatatattcacgatgttaaaagaaaagtaaaaatgtagtatttacaaactaaatgttt  7794600                       --------->ANAC58                       <---------ARR11(3)                       --------->ANAC46                       --------->ARR11(3)                ----------->GT1                              <---------CCA1(2)             --------->ANAC55(2)                           --------->CCA1(2)             <---------ANAC55(2)                          --------->ARR11(3)        --------->LBD16--------->ANAC58                   <---------ARR11(3)            --------->YAB1        <---------TOE1(2)                           <-------TEIL              --------->YAB1 <------- ------->GT1<-------TEIL       ------->TEIL    --------->AHL20(2)            <---------YAB1--------->ZAT6   tgttaaatccctggtacgtagtaacacacaatgtatgttatttgtataagaaaatacatagatatatctcttgtaatgtatgataaacaattgtcactaa  7794700  Previous    Next  AGI:  At3g22110.1    Description:  PAC1 (20S proteasome alpha subunit C1); peptidase. Identical to Proteasome subunit alpha type-4 (PAC1) [Arabidopsis Thaliana] (GB:O81148;GB:O23711); similar to PAE2 (20S proteasome alpha subunit E2), peptidase [Arabidopsis thaliana] (TAIR:AT3G14290.1); similar to Proteasome subunit alpha type-4 (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3) (Proteasome 27 kDa subunit) (GB:P52427); contains InterPro domain Proteasome alpha-subunit, conserved site; (InterPro:IPR000426); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) Range:  from: 7792645    to: 7794172    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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