Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------ANAC58                                                               <---------ANAC58                                                               <---------ANAC46                                                               <---------ANAC55(1)                                                          <---------ANAC55(2)                                                          --------->ANAC55(2)      --------->CCA1(2)                                                         <-------TEIL             --------->ARR11(3)                                     --------->YAB1    <---------SPL7             <---------ARR11(3)           ----------->GT1          <---------ATHB12 <---------------AtSPL8   ---------->DOF2 --------->RAV1(1)              <---------YAB1   <----------DOF2          ---------->DOF2         <--   acaacataacaacttgaaaataagtgtttgcattatcaatgataatgcgacctttgtggtacgtagcgtgtttagttaaagaaagatatatgtagttaat  7727200        --------->YAB1        <------ZmHOX2a(1)       ----------->GT1                           <---------YAB1                              <-------      <---------TOE2(3)     <---------TOE2(3) <---------AHL20(2)<---------At4g35610         ---------      <---------TOE1(3) <----------DOF2    <---------AHL20(1)   --------->At4g35610   --------->YAB1 -------ANAC46    --------->ANAC46         --------->AHL20(1)  ------->TEIL   --------->GLK1(2)   gtgtgtataaggataaatagaggcaactttgagatttgtttttaatatataatgctagtgaaatgaagctgcaagttgaaattctctatcaaaatttact  7727300                      <-----------GT1               --------->YAB1               --------->AHL20(2)                     --------->ARR11(3)               <---------AHL20(2)                     <---------ARR11(3)                        -----              --------->ICU4                <-----------GT1                                     <----         <---------ANAC46                 <---------AHL20(2)        ---------->DOF2      <---------At5g28300 ----GT1 ----------->GT1                  --------->AHL20(2)    --------->At4g35610 --------->DAG2 >AHL20(2) --------->ICU4              --------->WOX13(1)<----------DOF2           ---------->DOF2   aaatctacatgtcgtaattatatataactatagaatcaattcaattaaactagacagacctttgtcaactaaaagtactaaaaaaaaaagttactgcaac  7727400              --------->YAB1              -------->HAHB4              --------->ATHB12              <---------ICU4                             <---------ARR14(2)              --------->ATHB51               <---------ATHB12              <--------HAHB4                --------->ANAC46             --------->ICU4                 --------->ANAC58             <---------ATHB12               --------->ANAC58             <---------ATHB51             <---------ALFIN1                             <---------ALFIN1             --------->AHL20(2)     --------->AtMYB61   --------->HSFB2a(1)    <-----------GT1           --------->YAB1        --------->ZAT6         <---------GLK1(1)    <---------AHL20(2)     - ---->MYB46(3)<--------ATHB1     <-----------GT1        --------->GLK1(1)  ----------->TBP       ---- -----ATHB12 <---------YAB1    <-----------GT1      ----------->GT1      ------>ZmHOX2a(1)   ------>ZmHOX2a(1)   cattctaaatttctaataattagcaattttgtttaacaccatctccactcaatatcgaaaatccctcgagttctcctatataaacatcccaactcctaaa  7727500                                                                                        <------NtERF2                                                                                      <---------RAP2.6(2)                                                                                   --------->ALFIN1                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                         <-----------ARR10                                                                         --------->ARR14(2)          <---------ANAC46                                               <---------ARR11(1)       <----------DOF2                                 --------->ANAC58  <---------ARR14(2)      <---------DAG2                              --------->YAB1         <---------ARR11(3) -------->ARR14(2)   <---------AHL20(2)           *TSS --------->ANAC58  --------->ARR11(3)     <---- ----->AHL20(2)     --------->AHL20(2)    <-----------TGA1              <---------CCA1(2)   ---------   aaaatccccctttcggagaatataaaattccaaaactatgtattcgtcagtatcaaaacgccttgtctccgtccatatcttggtcgtggtggccttgcaa  7727600                                                                                         --------->GLK1(1)                                                                                        ------>NtERF2                                                                           <---------ANAC46                                                                 ------->GAMYB        --------->LBD16                                                                --------->MYB46(3)   --------->HSFB2a(2)                                                ----------->RAV1(1)  --------->MYB52(1) <---------ATERF1(1)                                              --------->ZAT18 <---------DOF5.7(2)    <---------LBD16                                          <---------ARR14(2) <---------WRKY38(1)     <---------HSFB2a(2)                                       <---------ANAC58      <---------WRKY12 <-------TEIL             <---------ATHB12          <---------ANAC58    <-----------HVH21<---------SPL7   <----------DOF2                   <---------ATHB12     <---------ANAC58--------------->AtSPL3 -----At4g35610           <-----------GT1 --------->ARR14(2)--------->DOF5.7(2)     <---------LBD16 >AtLEC2>>>>>>>>>>>>>>>>>LFY      --------->AtMYB61       <---------ANAC58<-----------------------TaNAC69(2)   ctgctctttatcccaatgttttgtctttgaaccagaccaatgcttatctgcaccataaatgcgtcaacgaccaagggacgtacaattcggggactccata  7727700                      --------->ANAC55(2)                      <---------ANAC55(2)                     --------------->AtSPL8                     <---------TOE1(2)                      --------->ZAT18                     --------------->AtSPL3                 --------->ZAT14       --------->ANAC58             ------->GAMYB          --------->TOE2(3)       <---------ZAT18       --------->ANAC58       --------->TOE1(3)            --------->TOE1(3) <---------MYB52(1) --------->YAB1       --------->TOE2(3)      --------->ZAT6<---------AHL20(2)          <---------ATHB12   cgagaaaaacctcaacagtctcatacgtactatctctaccttaaatttaaacttcggttttgtccactcgtccaatggtgacgctcccaactctgtcttc  7727800                                                <---------ANAC58                                                <---------ANAC58                                             ------>ZmHOX2a(1)                                         --------->ARR14(2)                                         <---------ARR14(2)             --------->DAG2             <-                                         <---------MYB52(1)            ---------->DOF2    --------->AHL20(2)                              <---------HSFB2a(2)                 --------->LBD16         <---------AHL20(2)                  ------>NtERF2        <---------ANAC58          <---------TOE1(1)   <---------AHL20(1)               <---------ATERF1(1)     <---------ANAC58      <---------ZAT2          --------->AHL20(1)             ------>NtERF2    --------->HSFB2a(2)      --------->MYB46(3)            <---------ARR11(3)   attaagcttcaatgccgaggcgactcttacttctccaagtgccgttcctgccttgccacagccaactccgaggtaaagtcatttcaatatttttaatttg  7727900                                                          <------MYB83                                           <---------GLK1(2)              ---------->DOF2              <---------ARR11(3)                                     ---         <---------AHL20(2)                --------->ARR14(2)         --------->AHL20(2)         ----   <---------ANAC55(2)                     <---------ARR14(2)  <---------MYB46(3)           <--------   --------->ANAC55(2)         <---------YAB1             <------MYB46(1)             --------->ZAT6 ----------HVH21        <----------DOF2------>ZmHOX2a(2)<---------WOX13(1)          <-----------GT1--   ttgtcacatatttatacaaaggtcatcttttttatcagtgatccagatactctactagattggtgttgttgaaaaaatactgcatttaacactagtataa  7728000         <---------AHL20(2)         <---------AHL20(1)         --------->AHL20(1)         --------->AHL20(2)     --------->AHL20(2) <---------ZAT18     <---------AHL20(1) <---------ZAT14     <---------AHL20(2) --------->ZAT14 ------>DAG2            --------->ZAT18 ------>DOF2 --------->AHL20(2)                             ----------->HVH21                      -- -------AGL15<---------AHL20(2)                         <---------AHL20(2)                    ------- --------->GT1    <-----------HVH21                     --------->AHL20(2)<------ZmHOX2a(1) ---------   aaagtaaaaaatttattaattgtcagtgcaatattgttcttgattttggtgtctatatttatatgacagattagaaggagatgtccaaaaaacaaggaga  7728100  Previous    Next  AGI:  At3g21937.1    Description:  pseudogene, similar to OJ1058_A12.21, contains Pfam profile: PF01657 Domain of unknown function; blastp match of 36% identity and 4.5e-26 P-value to GP|28411826|dbj|BAC57301.1||AP003863 OJ1058_A12.21 {Oryza sativa (japonica cultivar-group)} Range:  from: 7727550    to: 7728529    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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