Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   xx                                                                                                  <xx                                                                                       <xxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                    <---------YAB1    <xxxxxxxxxxxxxx                                                                <---------ARR11(3)    <xxxxxxxxxxxxxx                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)-------                                                      <---------------AtSPL3          <xxxxxxxxxxxxxx                                                      <---------------AtSPL8         xxxxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <------                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxx                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx                                               <---------WOX13(1)<------ZmHOX2a(2)   <xxxxxxxxxxxxxxx                                             --------->ATHB12   --------->ARR11(3)   xxxxxxxxxxxxxxxx                                            --------->ICU4     --------->GLK1(1)     --------->AtMYB61                                            <---------YAB1--------->SPL7   <---------YAB1 <xxxxxxxxxx                               <---------YAB1<---------ICU4    <---------GLK1(1)xxxxxxxxxxxxxxxxxxxxx                          ----------->GT1 --------->YAB1<---------SPL7     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        ---------->DOF2 <---------WOX13(1)<---------LBD16----------->GT1 <xxxxxxxxxxx ----->ARR11(3)     --------->ZAT6   <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxx ------ARR11(3) <---------WOX13(1)--------->ICU4xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<xxxxxxxxxxxxxxxx   ttcttctaaatcaacttgattaacaccaaagttaaaattatgaatgataattggtagtagtacggagatcatgaattgtgatatagaccacatccaaaac  7644000          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->ALFIN1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      xxxxxxxxxxxxxxxx>smallRNA(i)     <<<<<<<<<<<<<<<<<LFY     ----------->RAV1(1)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                   <---------DAG2 xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <----------DOF2 xxxsmallRNA(s)   --------->ZAT6                                                  --------->ZAT14 xxxxx>smallRNA(fl3)                                                              <---------ZAT18 xxxxxxxxxsmallRNA(le3)                                                           --------->ZAT18 xxxxxxxxxsmallRNA(l2)                                                            <---------ZAT14 xxxxxxxxxsmallRNA(i2)                                                         <xxxxxxxxxxxxxxxxxxxxx -->ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxsmallRNA(s2)                                                       <---------SPL7 xxxxxxx>smallRNA(si3)                                                       <---------ZAT14<xxxxxxxx ---ARR14(2) ----------->GT1                                               --------------->AtSPL3 xxxxxxxsmallRNA(s)         <---------ARR11(3)                             <---------------AtSPL3   < xxxxxxx>smallRNA(le3)      --------->ARR11(3)                    <---------YAB1<xxxxxxxxxxxxxxxxxxxx xsmallRNA(i)<---------REM1(1)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxx xxxxxxx>smallRNA(fl3)      --------->GLK1(2)   ------->TEIL     xxxxxxxxxxxxxxxx>smallRNA(s)      <x xxxxxxxxxxxxxsmallRNA(l2) <---------GLK1(2)   <---------CCA1(2) xxxxxxxxxxxxxxxxx>smallRNA(se3)   -- xx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->TEIL       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------GT1--------->SPL7    <--- xxsmallRNA(i)  <-----------GT1         <-------TEIL --------->ANAC55(2) <-----------GT1<xxxxxxxxxxxx xxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxx   cgcatcgcaacagtggtgtaacactaccaaaatctctacatatacatatgtatctacgtatttttgttactatttgaaccgtactgcactttatttctta  7644100            <xxxxxxxxxxxxxxxxsmallRNA(s)            <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxsmallRNA(s)           xxxxxxxxxxxxxxxx>smallRNA(i)          xxxxxxxxxxxxxxxx>smallRNA(i)       --------->ANAC58       --------->ANAC46       <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->ANAC58       xxxxxxxxxxxxxxxx>smallRNA(s)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ---------->DOF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->LBD16 xxxxxxxxxxxsmallRNA(s2) xxsmallRNA(le3)                                                                            <-------- >smallRNA(se3)                                                                             --------- xxxxxxxxxxxxxxsmallRNA(le3)                                                         --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  --------->ANAC55(1) xxxsmallRNA(si3)                                          --------->HSFB2a(2)       --------->ANAC58 xxxxxxsmallRNA(fl3)   <---------ARR14(2)                  <---------HSFB2a(2)       ----------->GT1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     --------->ARR11(3)           --------->ANAC58 ------->ANAC46        --------->ARR14(2)               <---------ARR11(3)           --------->ANAC46 ------ALFIN1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->GLK1(2)            <---------ANAC55(2) xxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->ANAC58 xxxxxxxxxxxxxxsmallRNA(si3)                           --------->RVE1(1)         --------->ANAC58   <   caccgcaaaacgcagtcaccattcggaccctgaatttgtcaacaatatcagactaaaaaatctagaaactttgcatacaatgcaagcacgtaatacatga  7644200                  <---------ANAC58                  <---------ANAC58    <---------WRKY38(1)                  <---------ANAC46    <---------WRKY12                 --------------->AtSPL8         --------->ANAC55(2)         <<<<<<<<<<WRKY11                                      <-------GAMYB         <---------ANAC55(2)         <<<<<<<<<<WRKY6                                      <---------MYB46(3)        <-------TEIL      --------->AHL20(2)                                              --------->MYB52(2) -ANAC55(2)      --------------->AtSPL3             ---------->DOF2                      <-------TEIL >ANAC55(2)  <----------DOF2  <-------TEIL        <------NtERF2                      --------->DAG2 ---------YAB1   <---------------AtSPL8   <----------DOF2   ------->TEIL            ---------->DOF2   ctataatcgatacgtctttttcgtacaaaaaattcataggtcaactttaggccccaaagatgtatgtggtcatcacatctcaccagaaaagttcgttgca  7644300                                                       <---------CCA1(2)                                                     <---------ANAC46                                                     <---------ANAC58        *TSS                                                     <---------ANAC58     ------------------------>ANAC81                                         <---------AHL20(2)              <------ZmHOX2a(1)                                         --------->AHL20(2)    --------->LBD16                        <---------AHL20(2)   --------->YAB1   <---------HSFB2a(2)                  <-                     ----------->GT1    --------->AHL20(2)    --------->HSFB2a(2)           ---------  <-----------GT1 --------->YAB1    <-------TEIL  --------->ALFIN1 ---------->DOF2    ---------->DOF2   aatttttcaaatcccatcaaaaatagtaaatttcaaaattcatttaataagagtgtcgtctcttccgaaaaaagaggaagaaacacagaaaagctaaagc  7644400                                                                  <---------GLK1(2)                                                                 --------->HSFC1(2)                                                                 <---------HSFC1(2)                                                                 --------->At4g35610                                                                 <---------At4g35610                                                         <------ZmHOX2a(2)                                                        <---------ARR14(2)                                                        ------->TEIL                                               ----------------->AGL1   <----------DOF2     ---------        --------->ANAC55(2)                --------->LBD16   --------->ANAC58               <--------     --------->ICU4                       <---------ANAC46   --------->ANAC46               <--------    <----------DOF2                       <---------ANAC58   --------->ANAC58          <---------HSFB2a(2) --------ANAC46      <---------CCA1(2)    <---------ANAC58------>ZmHOX2a(2)            --------->HSFB2a(2) ->DOF2 <---------ANAC55(2)      <----------DOF2        --------->ARR14(2)      <---------CCA1(2)<---   ttcgggcattatgtattgaaatcaaatctctctctctttttcttccgtggccaaaatggatccaagcagcttctctttggccatctcttcttgaagctgc  7644500                         --------->ARR14(2)                         <---------GLK1(2)     ------>ZmHOX2a(1)   <---------ARR14(2)    --------->TOE2(3) <---------HSFB2a(2) >At4g35610           --------->HSFB2a(2) -At4g35610        <-----------GT1      <<<<<<<<<TBF1    <-----------GT1                           <- -ZAT2   <---------GLK1(2)--------->GLK1(2)          ------>ZmHOX2a(1)                        ------- -------DOF2 <----------DOF2       <----------DOF2  --------->TOE2(3)                        <-------   tttcttcctcaaattcttttttttccagattcttctcctttcttcttccttcttccttatttcgatttcgaattttgaattttctcaatggctcaatcgt  7644600                                                            ------>NtERF2                                                     <---------GLK1(2)                                               --------->ARR14(2)                                       <---------ARR14(2)  --------->DEAR3(1)                                  ----------->GT1  <---------YAB1          <---------MYB46(3)   <----   <---------YAB1           <------ZmHOX2a(1)  <---------GLK1(2)--------->ARR14(2)              <---- --------ANAC46           --------->ANAC46     <---------ARR14(2)        <-------GAMYB          <---- -->YAB1                  <---------TOE2(3) <---------TOE1(2)   <---------ARR14(2) <---------ANAC46 --ATHB12          --------->MYB46(3)  --------->ARR14(2)  ----------->HVH21<-------GAMYB    <-------   gtcttaaaattgttcgaatcaacaatctaaggaacagagtgaatcgtcggattttgattctccgacgattcacacggttgttatggagtagaatcgttgc  7644700                                                                                           ------>NtERF2                                                                                          --------->DEAR3(1)                                                                                          --------->RAP2.3(3)                                                                                          --------->RAP2.3(2)                                                                                         --------->RRTF1(1)                                                                                         <------NtERF2                                                                                         --------->RAP2.3(1)                      --------->RVE1(1)                                                 <---------ATERF1(1)                      <---------GLK1(1)                                                 ------>NtERF2                      <---------RVE1(1)                                                 --------->LBD16                      --------->GLK1(1)                                                <---------ALFIN1                     --------->ARR11(3)                                                --------->DEAR3(1)               <---------LBD16                                                         --------->ANAC46      --------->LBD16<---------ARR11(3)                                            <------ZmHOX2a(2)      ------>ZmHOX2a(1)<---------ARR11(3)                                         <---------ARR14(2)    ----------->RAV1(2)--------->ARR11(3) <----------DOF2                  ------>ZmHOX2a(1)<------NtERF2 -----ANAC46<---------ARR14(2)    ----------------------->TaNAC69(2)       ===============HOX2a_HOX2a -----ANAC58--------->ARR14(2)  <----------DOF2       ------>NtERF2  ------>ZmHOX2a(1)<---------LBD16 -----ANAC58--------->GLK1(2)  <---------ANAC58<---------ANAC58      =====================HOX2a_HOX2a --MYB52(1)<---------CCA1(2)   <---------ANAC58<---------ANAC58   ---------->ID1  --------->ARR14(2)   ttgtactcctggcaaatctcggagatatctcttgctttctcgcgctcttccgtctccgactgtttctcgtccttctccttctccgatccccgccgtcgat  7644800                       --------->ALFIN1                       <---------AtMYB61                     <---------MYB46(3)                  <---------MYB46(3)                 <---------AtMYB61                 <---------DEAR3(1)               <---------MYB46(3)              <---------DEAR3(1)              <---------AtMYB61            <---------MYB46(3)           <---------AtMYB61           <---------DEAR3(1)                                  <---------ICU4           --------->ALFIN1                                 --------->YAB1         <---------MYB46(3)                              --------->TOE2(3)            --------->GLK1(2)         --------->MYB55(2)                      <---------MYB52(1)                  --------->ARR14(2)        --------->ALFIN1                        <---------MYB52(1)                   <---------ARR14(2)        <---------AtMYB61                       <-------GAMYB  --------->YAB1        <---------GLK1(2)        <---------DEAR3(1)                     --------->MYB55(2)                <------ZmHOX2a(2)       <-------GAMYB--------->ALFIN1           <---------MYB46(3)               --------->ARR14(2)      <---------MYB46(3)                       <---------DEAR3(2)         --------->At4g35610      <---------DEAR3(2)                      <---------DEAR3(1)        <---------WRKY38(1)     <---------At1g77200                      <---------TOE2(2)-------->HAHB4   <---------ARR14(2)     <---------DREB2C(2)<---------MYB46(3) <---------MYB46(3) --------->ICU4   --------->GLK1(1)     <---------DEAR3(1)<---------ANAC46    --------->MYB52(2) <---------YAB1   <---------GLK1(1)    <------NtERF2--------->ALFIN1         --------->SPL7 --------->YAB1 <---------WRKY12       <-----   <-----------HVH21<---------AtMYB61    <---------MYB52(1) <---------ICU4<---------At4g35610  <-----  <---------DEAR3(1)<---------DEAR3(1)  <---------SPL7  <---------YAB1<-----------HVH21  <---------YAB1 <------NtERF2--------->ALFIN1  <---------MYB46(3)<---------MYB46(3) ------->GAMYB------>ZmHOX2a(2)   gtcgtcgtcggtggtggtggtggtggtggtgagtttgttcgtcgttcgtcggttgtttacgataatgataacagtcatcggagatcggattctgatttgg  7644900  Previous    Next  AGI:  At3g21700.1    Description:  GTP binding. similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G54840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24139.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTPase, Tem1 (InterPro:IPR017231); contains InterPro domain Miro-like; (InterPro:IPR013684) Range:  from: 7644377    to: 7646362    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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