Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <-----------GT1                                                                           --------->ICU4                                                                      --------->ANAC55(2)                                                                      <---------ANAC55(2)                                 <---------GLK1(1)                    --------->ANAC46                               <------ZmHOX2a(1)                   <-------TEIL                           ---------->DOF2                        --------->GLK1(2)                         <------NtERF2                            --------->ARR14(1)                        --------->LBD16                           --------->CCA1(2)                       --------->LBD16                           --------->ARR14(2)              <---                      <---------LBD16          --------->MYB46(3)<---------ARR14(2)           <------                      <------NtERF2     <---------ANAC46         --------->ARR11(1)           <------                    <---------DEAR3(1)  ----------->RAV1(2)      <---------GLK1(2)            <------ --------HVH21   --------->MYB52(2)  ------>ZmHOX2a(1)         ----------->ARR10           <---------   gtcgcagagagaggtatgttagtcgccggaaaaggattcctcgcctgtaacgactccatcgtcgtgagattcgcgtaattactaatcgcgactctttcgt  7618200         <-----------HVH21 --------->ARR14(2) <-----------ARR10 <---------ARR11(3)                                                       <-------TEIL --------->ARR11(3)                                                      --------->CCA1(2) <---------ARR14(2)   <---------At4g35610                             --------------->AtSPL3 ------TOE1(2)        --------->At4g35610 --------->GLK1(1)           <---------------AtSPL8      <-- ---ANAC58         --------->ZAT14        <---------GLK1(1) --------->ANAC58 --------->ANAC58     --- ---ANAC58     --------->ZAT6           <------ZmHOX2a(1)   --------->ANAC58 --------->ANAC58-------- ---ANAC46 <---------ETT(2)      --------->ZAT18    <--------P        --------->DAG2 ---------->DOF2 -DOF2  ------>ZmHOX2a(1)        <---------ZAT18<-----------RAV1(2) ---------->DOF2 <---------STY1(1)   aagtatcttcctgtcgaacactgtagctgaaattgtgccctaggaaatcaccaggttgacattcgcaagggaaaggtacaagaaccctagagcccatctg  7618300                                     --------->ARR14(2)                                           <--                                     <---------ARR14(2)                                        ------                                    ===============HOX2a_HOX2a                                 ------                              ----------->RAV1(2)                                           <--------                       ===================RAV                                              <--------P                       <-----------RAV1(1)                          <------NtERF2          <---------WOX13(1)                    <-----------GT1 <------ZmHOX2a(1)          --------->DAG2             <-------GAMYB          ---------->ID1  <---------REM1(1)                   --------->SPL7             <---------MYB46(3)      <----------DOF2<---------At5g28300           --------->ATHB12------>NtERF2        <---------AtMYB61 -------GLK1(2) <---------TOE1(3)   --------->ATHB12       ------>ZmHOX2a(2)         <---------ARR14(2) ------>ARR14(2)<---------TOE2(3)   ==============================HOX2a_HOX2a     <---------TOE1(3) --->RAV1(2)<----------DOF2  ------->TEIL   ------>ZmHOX2a(2) ---------->DOF2     <---------TOE2(3)   gattctatctttgtctttaatgttactgttgtacctgaggattggatcgaaattgatttgatcgtaaggcgcgattgaagaattgaggttttggttgatg  7618400                                                           <---------ZAT18                                                           --------->ZAT14                  <---------HSFB2a(2)             <---------At4g35610     --------->ALFIN1   <---------------AtSPL8    <---------ZAT2         --------->ANAC46 -------ANAC46    --------->HSFB2a(2)     ---------->DOF2  <---------ZAT14 ----->TGA1    <---------MYB52(1)         --------->MYB52(1)             <---------DEAR3(1) ----->HVH21 <---------ANAC58         <---------ZAT6      ------>ZmHOX2a(1)      >>>>>>>>>TBF1    >>> -MYB46(3)   <---------ANAC58   ------->TEIL  <------ZmHOX2a(1)         <---------LBD16--------->YAB1   acggagagtgttgttccgttctcgagatagtacgaagctagagctaaaggacagctagtcctgcacttagattccacggcgaagaagaatgagaagagaa  7618500                                                         --------->LBD16                                                        <-----------RAV1(2)                                                       --------->LBD16                                                       <---------LBD16                   <-------GAMYB                                                   <---------GLK1(1)      --------------------->WRI1                                                  <---------GLK1(2)      <---------MYB52(1)       ---                              <-------TEIL    ------>ZmHOX2a(1)    <---------GLK1(1)    <---------DEAR3(1)                       <----------DOF2       --------->TOE2(3)  --------->HSFC1(2)      <---------MYB46(3)                    <---------ARR11(3)  --------->HSFB2a(1)     --------->HSFB2a(1)     *TSS    <----  --------->GLK1(2) --------->ARR11(3)  <---------At4g35610     <---------HSFB2a(1)  <---------ANAC46 <---------ARR14(2)<---------GLK1(1)    <---------HSFC1(2)      <---------HSFC1(2)   <---------ANAC58 >>>>>>TBF1        --------->GLK1(1)    --------->HSFC1(2)   <------ZmHOX2a(1)       <---------ANAC58   gaagaatcggagcgattagagaaatctttagcttcattttgaagcttccttagattccccagaggaagggtctctgttttttttgtttcgtcgttgctct  7618600                                                                                <---------YAB1                                                                              --------->ATHB12                                                                              <---------ICU4                            --------->DAG2        >>>>>>>>>WRKY6             --------->ICU4                            <---------TOE2(3)   --------->WRKY38(1)          <---------YAB1                          ---------->DOF2       --------->WRKY12           --------->YAB1      <-----      <---------------------WRI1                --------->WRKY45<---------MYB52(2)   --------->ATHB12 ------>ALFIN1        <----------ID1           --------->DOF5.7(2)---------->DOF2   --------->ICU4 -------RAV1(1)  ---------->DOF2 <---------WRKY18(1)    <---------AHL20(2)--------->ICU4   <---------ZAT6   gtggggaagaagatggattcaaagacgaaaaaggttgacttaatcaaacgttgactatttttttcaactaaagagaatgatgattactgattagtgtttg  7618700                          --------->YAB1                         <---------AHL20(2)                         --------->AHL20(2)                     --------->AHL20(1)                     <---------AHL20(1)                     <---------AHL20(2)                                           ---------->DOF2                     --------->AHL20(2)                   --------->At4g35610    <---------WRKY38(1)                --------------->AGL15  <------ZmHOX2a(2)  <---------ZAT2         <---------WRKY12           <---------HSFC1(2)-------->HAHB4 <---------AHL20(2)                   <---------WRKY45           --------->HSFB2a(1)        --------->ARR11(3)  --------->ZAT2        <<<<<<<<<<WRKY62           --------->HSFC1(2)--------->YAB1--------->AHL20(2)                   <<<<<<<<<<WRKY40           <---------HSFB2a(1) --------->ZAT6       <---------MYB52(2)          <<<<<<<<<<WRKY18 ----MYB46(3)  --------->TOE2(3)      <---------ARR11(3)  <---------At4g35610   --------->WRKY18(1)   ttaattgttgagaagtttcttaattaattaataatactaagatcatttaatgcaactagcagctggaatttgaaagtctttggtcaaagacaaaaactat  7618800                                                                              <------ZmHOX2a(2)                                                                  --------->AHL20(2)               <-                                 <---------ANAC58                 <---------AHL20(2)           <-----             <-------GAMYB       <---------ANAC58                <---------AHL20(1)            <-----            <-----------RAV1(1) <---------TOE2(3)                --------->AHL20(1)         <--------   --------->RAP2.6(2)         <-----------GT1                   <---------AHL20(2)      ----------->GT1   --------->ANAC58        <---------ARR11(3)                    --------->AHL20(2)    ---------->DOF2   --------->ANAC58        --------->ARR11(3)          ----------->GT1<---------AHL20(2)--------->DAG2   gaagaccgccatttctgttgaaggaagtagattttacgttcgaattttgtatgttttttgttaaaaatttatttttttggatcaaaatataaagttactt  7618900                                                                                           <------MYB46(1)                                                                                           <------MYB83                                                                                  <----------DOF2                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                               --------->ARR11(3)                                                    <---------GLK1(2)          <---------ARR11(3)                                          <---------AHL20(1)                   --------->ARR14(2)                                          <---------ARR11(3)                   <---------ARR14(2)                                          --------->AHL20(1)                   <---------AGP1                                        <---------AHL20(1)            --------->ALFIN1    <---------AtMYB61 --------YAB1                           <---------AHL20(2)          --------->CCA1(2)    <---------MYB52(1) ----DAG2                               --------->AHL20(1)      --------->YAB1<---------CCA1(2) -----DOF2                           --------->AHL20(2)  --------->ZAT6      ----------->ARR10 <----- ---GT1                <---------AHL20(2) --------->ARR11(3) --------->YAB1 <--------P <---------O2   tataatcgaaaacaatagagactatttttttttcttatataaaatatttttcaaaattctcactaataagaaatgggggtagatctttcacgttggtctt  7619000                                                              --------->ANAC55(2)                                                              <---------ANAC55(2)                                                             <---------LBD16                                                             <-------TEIL                                                            --------->CCA1(2)                                                            --------->ARR14(1)                                                           --------->ARR14(2)                                                           --------->ARR11(3)                                                           --------->ARR11(1)                                                           <---------ARR14(2)                                                         ----------->ARR10                                                  <---------ANAC46                                                  <---------ANAC58                 --------->ATHB12                                                  <---------bZIP60(2)         <---------MYB52(2)                                                  <---------bZIP60(1)    ----------->GT1                                                  <---------ANAC58     --------->DAG2 <---------ZAT6                      <----------DOF2<------NtERF2     --------->DAG2 -----DOF2  <-----------GT1--------->TOE2(3) <-----------RAV1(1)     ---------->DOF2          -------   ttagagttgaattgttacccttcttcatacattaatctgctttaactctgtggcgtcgaaagatacgggagaaaagggaaacaaaccattgccataacac  7619100  Previous    Next  AGI:  At3g21630.1    Description:  CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1); kinase/ receptor signaling protein/ transmembrane receptor protein kinase. similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24041.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domai Range:  from: 7615392    to: 7618588    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g21640.1    Description:  TWD1 (TWISTED DWARF 1); FK506 binding / peptidyl-prolyl cis-trans isomerase. Identical to 42 kDa peptidyl-prolyl isomerase (FKBP42) [Arabidopsis Thaliana] (GB:Q9LDC0;GB:Q8RWM0); similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to ROF1 (ROTAMASE FKBP 1) [Arabidopsis thaliana] (TAIR:AT3G25230.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40813.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, FKBP-type; (InterPro:IPR001179); Range:  from: 7618937    to: 7621484    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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