Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   <x                                                                                                 xxxx                                                                                                 xxxx                                                                                                <xxxx                                                                                                xxxxx                                                                                                <----                                                                                                xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             <-------                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                          xxxxxxxxxxx                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                                      <xxxxxxxxxxxxxx                                                                                      ------->TEIL <-                                                                                      --------->GLK1(2)                                                                                      <---------ARR11(1)                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                           ----------->GT1                                        xxxxxxxxxxxxxxxx>smallRNA(s)                           <---------YAB1                           ----------->GT1 xxxxxxxxxxxxxxxxx                         <---------ICU4                     --------->At4g35610   <xxxxxxxxxxxxxxxxxx                      --------->YAB1                        <---------At4g35610<---------HSFB2a(2) xx        <------ZmHOX2a(1)--------->YAB1                    xxxxxxxxxxxxxxxx>smallRNA(s) --------->TOE2(3)      <---------TOE2(3) --------->ICU4                   --------->DOF5.7(2)   ------>ZmHOX2a(1)xxxxx --->TOE1(3)         <-------TEIL                        <---------MYB52(1)    --------->HSFB2a(2)xxx --->TOE2(3)     <---------KAN4(2)                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxx   taacaaatgaggataagagcatattcatcatgaaaaattcaaaaattctaccgagcgtcgttagctcaattggtaaaattcctagacgaatcttagaggt  7560300             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxxxxxxsmallRNA(s)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ----------->HVH21         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         ----------->TGA1     <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(s)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          xxxxxxxxxxxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                xxxxxxxxxxxxxxxxxxxxx    xxxxxxxxxxxxxxxx>smallRNA(i)                                                <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                 --------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i)                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------DEAR3(2)                                                    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <-------TEIL xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(s)                                          --------->CCA1(2) xxxxxxxxxxxxxxxxsmallRNA(i)                                          --------->ARR14(1) --------------->AGL1                                                 --------->GLK1(2) --------ANAC46           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <---------GLK1(2) xxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----P  xxxxxxxxxxxxxxxx>smallRNA(s)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(le3)             <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(le3)              <---------MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------AtMYB61xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxx>smallRNA(le3)          <---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(le3)         <---------DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ARR11(1) xxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(si3)        <---------LBD16   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ------>NtERF2 --TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(le3)   --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)  --------- xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ARR14(2)------>ZmHOX2a(1) xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxsmallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i) --------LBD16<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)x xxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxx>smallRNA(si3)--------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxsmallRNA(se3)  --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)     xx xxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i)<---------ARR11(3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------AHL20(2)   xxxxxxxxxxxxxxxx>smallRNA(i)    --------->LBD16 xxxxxxxxxxxxxxxxx>smallRNA(se3)<---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->RAV1(2) xxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xx   tgccggttcgagtgacgcttgggacgaaactaatattatatgcggtggttttgggcctggagggattacaagattcggcccaaaacctcctgatattcaa  7560400                                            --------->ATHB51                                            --------->ATHB12                                            -------->ATHB1                                            <---------ICU4                                           --------->ICU4                            <----------DOF2--------->AHL20(2)                               <--------             --------->AHL20(2)            --------->AHL20(1)                          --------->AHL20(2) xxxx>smallRNA(si3)      --------->ARR11(3)<---------AHL20(2)                          <---------AHL20(2) x>smallRNA(le3)     ---------->DOF2    --------->AHL20(1)                     <---------YAB1 --------------->ANAC81  <---------ARR11(3)<---------YAB1                    --------->YAB1 --------- xxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------AHL20(2)           <-----------GT1  --------->YAB1 xxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->AHL20(2)     <---------AHL20(2)    <---------YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->AHL20(2)     --------->AHL20(2)  --------->ICU4   aaaaaaaaaaaaaaaaaaaattcaaaagttctttcaaacaaaaaaattattagatgtttttgaattttatataactaaattatagttattaaaataaaat  7560500                                   <---------ANAC46                                 ----------->GT1                                 <---------ANAC46                                --------->ALFIN1                                <---------AtMYB61                              --------->ALFIN1                              <---------ANAC58                              <---------ANAC58                       <---------ARR14(2)                              <---------ANAC46                       --------->ARR14(2)                            <---------ANAC58                      <---------ANAC46                            <---------ANAC46                    ----------->GT1                    --                           <---------AtMYB61                   --------->ALFIN1                    <-                           --------->ALFIN1                    <---------AtMYB61                  ---                          <---------ZAT14        ----------->GT1<---------ANAC46                  <--                         --------->ALFIN1<-----------RAV1(1)  <---------ZAT14                <------- --------->MYB46(3)   --------->DAG2  <---------ARR14(2)  --------->DAG2               --------->MYB52(1) -AHL20(2)           ---------->DOF2  --------->ARR14(2) ---------->DOF2              ----------->HVH21 >AHL20(2)   ----------->GT1<---------ANAC58<---------ANAC46 --------->ALFIN1        <---------MYB52(2)   caaaccaatgtacaagagaaaaaaaaagtgtggtgtggtgtatatggtggagagaaaaaaaaagtgtggtgtatatgtccagcgagaactaacggggtca  7560600                                                                                              -------                                                                     --------->TOE1(3)     <---------                                 --------->YAB1                --------->LBD16            <---------ANAC46     <---------YAB1             <---------YAB1                <---------ANAC55(2)         <---------ANAC58 ------->ATHB12        <---------ANAC46                       --------->ANAC55(2)         <---------ANAC58 --------AHL20(2)      <---------ANAC58                    <---------ARR14(2)         <---------ANAC58 ------>AHL20(2)       <---------ANAC58                    --------->GLK1(2)        --------->ARR11(3) -------AHL20(2)   <---------LBD16                         --------->ARR14(2)      --------->GLK1(1) ----HVH21       --------->GLK1(2)                   ----------->GT1 --------->TOE2(3)<---------ANAC58   tttattgatgaataacaagtttctggggtgttttatgaaaatactattttttatggggcaaaatccgtaaaccctaaaaatacagagttcttgcgtcaaa  7560700                                                 --------->ARR11(3)                                   --------->WRKY38(1)                                   --------->WRKY12                                   <---------ZAT14         --------->ARR11(3)                                   --------->ZAT18   --------->AtLEC2                          --------->ATHB12       <---------ARR11(3)                          *TSS   --------->At4g35610 --------->ANAC58                         --------->MYB46(3)     --------->GLK1(1)           <---------TOE1(2)                      --------->ZAT14        --------->LBD16      --------->ZAT18   --------->ATHB12 --------->ANAC58       ------>ZmHOX2a(2)      <---------ZAT18         =========== --->DOF2           --------->ANAC58  <---------WOX13(1)   <---------ARR11(3) <---------GLK1(2)  ---- --HVH21       ----------->HVH21 <---------At4g35610 --------->ANAC58    <---------ANAC46 <----------DOF2   gagactgatttgttcttgtgacactgaaccattggagttgactgatcccgatatcatgcaatatctatcgcactctcgtagaatcgctcgggctttgaaa  7560800                                                                   <----------DOF2           --------            --------->HSFB2a(2)<---------CCA1(2)  <-----------RAV1(1)   <---------ALFIN1     <------- =============================bZIP_DOF      ===========================HOX2a_HOX2a    --------->LBD16 ----->MYB46(3)     --------->TGA1a         ------>ZmHOX2a(1)   ------>ZmHOX2a(2)     ---------------   ccactagctctcgtcgagaccgatgtgagatttgtatccaatgctccttctcatgttgttcatcgatctctttcccactctgtatttccaggtactatct  7560900                                    <----------DOF2                           <---------MYB46(3)                        <---------ANAC58                        <---------ANAC58                   --------->MYB52(2) ->ARR11(3)  --------------------->WRI1 --ARR11(3)  <----------DOF2<-------GAMYB           <----------DOF2      ----------->GT1           -- >AtSPL8<-----------GT1 <---------ANAC46            <---------DAG2<------ZmHOX2a(1)    ----------->GT1   tcttcatttttcacactttgtttgtttcgtcgttgaagctttgaaaaatgggaactttttggtttataggaaaaatggatacttgtaatcagttatatgc  7561000                <--------P                      --------->ANAC58               <-------GAMYB               ------>ZmHOX2a(1)           <---------ANAC46                ----------->RAV1(2)             <--------P           <---------bZIP60(2)  <---------MYB59 --------->ANAC58     ------>ZmHOX2a(1)        ----------->HVH21      <---------At4g35610               <---------ARR14(2) <---------ATHB12              --------->At4g35610               --------->ARR14(2)         <-------- ------->WOX13(1)<---------MYB46(3)        --------->At4g35610   --------->GLK1(2)     <-----------GT1   tcaatcacctatgacggggttgatgatgttgagagctaacttctcctctgaagcaaaacatgttgagaatcctacaggttgctaaattttgactctttag  7561100                                                                  <---------At4g35610                                                           --------->ALFIN1                                                       <---------ANAC46                                                       --------->ALFIN1                ----------->GT1                ----------->HVH21                  --------->At4g35610      --------->ANAC58             <----------DOF2                       <---------At4g35610  <-----------HVH21       <----            <---------ANAC58               ------>ZmHOX2a(2)<-------GAMYB   --------->ANAC58    ----- --DOF2     <---------ANAC58           ------>ZmHOX2a(1)   <-----------RAV1(1)    --------->AHL20(2)<   ttagaaatggaatggcttttgacacttagttagaatgtttcctgatcgaatttagctgtgtgtgttgcagaggctgtcaaggaattacatagtaaaatac  7561200  Previous    Next  AGI:  At3g21465.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15640.1); similar to adenyl cyclase [Nicotiana tabacum] (GB:AAB87670.1) Range:  from: 7560726    to: 7563472    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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