Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ------->GAMYB       --------->MYB46(3)                                             --------->CCA1(2)      --------->ANAC58                                               --------->ARR11(3)      --------->ANAC58                            --------------->AGL15    --------->MYB46(3) --------->YAB1     <----------DOF2      --------->YAB1                  ------  ------------------------>ANAC81   ----------->GT1      ----------->GT1 <---------TOE2(3)     ------ ---->MYB52(1)        <---------ATHB12    <---------DAG2 --------->YAB1 --------->DAG2       <------- --ANAC55(2)   <----------ID1       --------->YAB1<---------------AGL15---------->DOF2 <---------YAB1   agagaaacaaccaaaaaacaacaaatcaaaactaaaaatcgtaactttataactaaaaatcgtaattagaagataaaggtgaagtttttatgaaacctac  7495900                   <---------ANAC46                  <------NtERF2                  ------>NtERF2                 <---------RAP2.3(1)             <------NtERF2                <---------RAP2.6(2)             --------->HSFB2a(2)                <---------DEAR3(1)              --------->LBD16                <---------RAP2.3(2)             ------>NtERF2                <---------ANAC46                <---------HSFB2a(2)                <---------RRTF1(2)         --------->SPL7      --------->ZAT2                       <-------TEIL      <---------At4g35610         --------->ANAC58     --------->ZAT2      <---------ZAT2        --------->ANAC58   --------->LBD16       --------->MYB52(1)      --------->At4g35610 <---------bZIP60(2)  <---------LBD16    --------->YAB1 <---------At4g35610     <-----------------------TaNAC69(2)       --------->ANAC46 >MYB46(1)     <---------LBD16    --------->ANAC58    --------->ARR11(3)  <---------bZIP60(2) >MYB83     <----------DOF2 --------->ANAC58  <---------LBD16     --------->ANAC55(1)               < --MYB59 ------>NtERF2 ----------->HVH21<---------HSFB2a(1) <-----------HVH21                <-------   ttcagcatagctgcctttgcggcgagtgacacggccaagaaaacgttcgccgggaagagctcggtcacacataacgacgtagccagttccatcaacttta  7496000                                                                                 <---------YAB1                                                                          <---------ANAC46                                                                         <------NtERF2                                                                         --------->RAP2.3(1)                                                                         --------->DEAR4(2)                                                                         --------->ATERF1(1)                                                                        <---------RAP2.3(1)                                                                        <---------ATERF1(1)                                                                        ------>NtERF2  <---------ANAC58                                                                        --------->ABI4(2)                                                                       --------->DEAR3(1)                                                                       <---------DEAR3(1)      <-----                                    --------->ANAC58                  --------->ATERF1(1)      <-----                                --------->ANAC58                     <---------ATERF1(1)     <-------     <----------DOF2            --------->ANAC58                     <---------RAP2.3(1)   <---------ANAC58 --------->GLK1(2)  ------>ZmHOX2a(1)    <---------ALFIN1           --------->ANAC46   <---------ANAC58 ---------GLK1(2)  --------->TOE2(3)--------->ANAC58       <---------ANAC46 <---------MYB52(1)<------ ---DOF2   <----------DOF2      --------->ANAC46     ------>ZmHOX2a(1)--------->RAP2.3(1)  <---------ANAC58   cagattcctttgcctttgaatcctaaactctcgcacacaagctccactgtttctcctcgtttcggataatacggcgccgttttctcattgcttacgttgg  7496100                                         --------->LBD16                                     ------>NtERF2                                    --------->DEAR3(1)                                 <-----------GT1                                            --------- -MYB46(1)<-------GAMYB--------->HSFB2a(2)                                                  --------- -MYB83  <---------MYB46(3) <----------DOF2 <XXXXXXXXXXXXXXXXXXXXXMIR4221      --------->At4g35610--- --MYB52(1)          ----------->RAV1(2)--------->LBD16        <------ZmHOX2a(1)  --------->At4g35610 ---AtMYB61    <---------At4g35610<---------At5g28300        <-----------------------TaNAC69(2)   ---   tgttgttctcgtcgttgagcttcttctgggctttattaccgcccgagaattcagaaggggagagaggagcgagagaagacgagcagcatcgaaacctatg  7496200                          --------->MYB52(1)                       --------->ANAC55(2)          ------>NtERF2                       --------->TOE1(1)            <------NtERF2                       <---------ANAC55(2)        --------->ATERF1(1)                     <---------ALFIN1             <---------RAP2.6(2)                  --------->DEAR3(1)              <------NtERF2                  <---------ALFIN1               <---------ATERF1(1)                  --------->AtMYB61             --------->DEAR3(1)                 <------NtERF2                 <------NtERF2                 --------->MYB46(3)            --------->ATERF1(1)                <---------ATERF1(1)           <-----------HVH21               --------->PCF2                <---------DEAR3(1)              --------->ZAT18                <---------ANAC58           --------->ALFIN1                  <---------ANAC58                  <---------ANAC58       <---------ANAC58--------->ANAC46     --------->ATERF1(1)                <-------GAMYB       <---------ANAC46--------->ANAC58    <---------ATERF1(1)                 <---------ANAC58*TSS       <---------ANAC58--------->ANAC58  ==========================RAV        <---------MYB46(3) >TOE1(2) --------->REM1(2)----------->RAV1(2)<---------ATERF1(1)            <---------ANAC46 ------- >TOE2(2)--------->ALFIN1 ------->TEIL   <-----------RAV1(2)          --------->ATERF1(1)     ------- ------>ANAC58<---------ZAT18           --------->ZAT2 ----------->RAV1(1) <-----------HVH21  <------ ------>ANAC58<---------PCF2            --------->At4g35610          ------>NtERF2            -------   aagccatgagcgtgtgggcaccaccacgtacctgagtccatgagcaggcgtcgcggccaacattgaaacggagcccgagtcgggtgctaatttctgaatc  7496300                                                         --------->ARR14(2)                                                         ------>MYB83                                                         <---------ARR14(2)                                                         ------>MYB46(1)                                                       <---------MYB59                                                   <---------ETT(2)                                                   --------->DEAR3(1)                                                   --------->WRKY38(1)                                                <---------ANAC46                                                <---------ANAC58 -->ARR14(2)                                    <---------ANAC58 -->GLK1(2)     ----------->GT1   --------->ANAC58 --------->ETT(2)                              ---- ---ARR14(2)--------->ZAT14       --------->ANAC58 --------->WRKY12                        --------->YAB1 >TEIL      <---------ZAT14       --------->ANAC46--------->ATERF1(1)                     <---------ATHB12   tgttgataagagagaacagtgtgaatagatttcaaaacgacatcgtgtttgcgtcgacctatcttcttcgtcttgtatagcttaaacccctaatcatata  7496400                                                                          <---------LBD16                                                                         --------->SPL7                                                                        <---------MYB52(1)                                                                       <---------SPL7                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)                                                                  --------->GLK1(1)          ------->GAMYB                                      <---------LBD16          --------->ARR14(2)         --------->MYB46(3)                   <-----------HVH21   <---------GLK1(1)   <---------ARR14(2)    --------->ANAC46                     --------->ATHB12  <---------ARR14(2)     <---------LBD16 ----->ANAC46                           <---------YAB1     --------->ARR14(2)  <----------DOF2    ---   ctaaacccacaacgacagcgttttgagagttgctactgaatgctgattagtcagggctcggtatacgggtatccgttcggggttttcggatttaggctct  7496500                           <---------ANAC46                           <---------ANAC58                           <---------ANAC58                          <---------MYB46(3)                      --------->ATHB12           <---------TOE2(2)                     <---------YAB1              <---------TOE1(2)                     --------->ICU4             ------>ZmHOX2a(1)                    <---------TOE2(3)           ======================HOX2a_HOX2a                 <--                   --------->YAB1         <------MYB83          ------>ZmHOX2a(2)                 <--            <---------RVE1(1)             <------MYB46(1)      <------ZmHOX2a(2)                  <--            <---------CCA1(1)            --------->MYB59      <---------ARR14(2)                 ----            --------->GLK1(1)          <---------MYB52(1)     --------->ARR14(2)    <---------TOE2(3)           --------->ARR14(2)      <---------ZAT14    ----------->ARR10  <---------DAG2          <---           <---------ARR14(2)--------->ALFIN1   =======================HOX2a_HOX2a  <---------TOE1(3) ------->DOF2   --------->YAB1   <---------GLK1(1)   <-------TEIL     <-----------GT1    ------------   tagagcccattcggatatttataatgtttgggtggagttcagtttggttcctaggttcgattcggatcgggtttacctttcgaattcaggtttttgggtt  7496600         --------->LBD16        --------->ANAC46       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     --------->ARR14(2)                                     <---------AHL20(2)     <---------ARR14(2)                              --------->ANAC46 ----MYB46(1)                               ----------->RAV1(2) <-----------GT1 -------MYB46(3)                        <---------At4g35610<---------AHL20(2)                  ------ ----MYB83                              --------->At4g35610--------->AHL20(2)         <---------ANAC46 ----->MYB59                   ----------->RAV1(1)   --------->ANAC58              <----------DOF2 ------AtMYB61 --------->MYB52(1)--------->MYB46(3)  --------->ANAC58       <----------DOF2    <----- ----------->TaNAC69(2)        =========================RAV<---------AHL20(1)  <---------CCA1(2)    -   tggttcggatccgaaactactggagaaaacttccaacaaatgagcagcctgagacactcaattttttttctacttgctcttttatcttttgtggattaag  7496700                                                                                   --------->ARR14(3)                                                                                   <---------ARR14(3) --------->ATHB12   --------->YAB1                                <----------DOF2  <---------GLK1(2) --->ANAC55(2)     --------------->AtSPL3                    ---------->DOF2       <---------ARR11(3) ----ANAC55(2)     --------------->AtSPL8           <-----------GT1                --------->ARR11(3) -------->ICU4   <---------GLK1(2)       <---------ICU4  <----------DOF2  --------->ZAT6   taatctttggaatagaatagaatcgtacttgactatagaacaattcttgcaatttttcactttgaaagctttgttcccactacaagattttgaaccaaaa  7496800  Previous    Next  AGI:  At3g21300.1    Description:  RNA methyltransferase family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G28450.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65004.1); similar to hypothetical protein OsJ_000702 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10877.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45745.1); contains InterPro domain (Uracil-5)-methyltransferase (InterPro:IPR010280); contains InterPro domain 23S rRNA methyltransferase/RumA; (InterPro:IPR001566); contains InterPro domain Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); contains InterPro domain Methyltransfer Range:  from: 7493445    to: 7496295    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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